Ohno's dilemma: Evolution of new genes under continuous selection
暂无分享,去创建一个
[1] J. Piatigorsky,et al. The recruitment of crystallins: new functions precede gene duplication , 1991, Science.
[2] M. Syvanen,et al. Molecular cloning of a glutathione S-transferase overproduced in an insecticide-resistant strain of the housefly (Musca domestica) , 1991, Molecular and General Genetics MGG.
[3] J. Roth,et al. Multiple pathways of selected gene amplification during adaptive mutation , 2006, Proceedings of the National Academy of Sciences.
[4] Vincent J. Lynch,et al. Inventing an arsenal: adaptive evolution and neofunctionalization of snake venom phospholipase A2 genes , 2007, BMC Evolutionary Biology.
[5] T. Lenormand,et al. APPEARANCE AND SWEEP OF A GENE DUPLICATION: ADAPTIVE RESPONSE AND POTENTIAL FOR NEW FUNCTIONS IN THE MOSQUITO CULEX PIPIENS , 1998, Evolution; international journal of organic evolution.
[6] J. Pringle,et al. Multicopy suppression of the cdc24 budding defect in yeast by CDC42 and three newly identified genes including the ras-related gene RSR1. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[7] P. Mieczkowski,et al. The Pattern of Gene Amplification Is Determined by the Chromosomal Location of Hairpin-Capped Breaks , 2006, Cell.
[8] M. Long,et al. Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila. , 1993, Science.
[9] N. Watanabe,et al. Resistance to Protoporphyrinogen Oxidase-inhibiting Compound S23142 from Overproduction of Mitochondrial Protoporphyrinogen Oxidase by Gene Amplification in Photomixotrophic Tobacco Cells , 2002, Bioscience, biotechnology, and biochemistry.
[10] S. Hooper,et al. Duplication is more common among laterally transferred genes than among indigenous genes , 2003, Genome Biology.
[11] J. Roth,et al. Spontaneous tandem genetic duplications in Salmonella typhimurium arise by unequal recombination between rRNA (rrn) cistrons. , 1981, Proceedings of the National Academy of Sciences of the United States of America.
[12] B. Haas,et al. The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease , 2005, Science.
[13] Sean D Hooper,et al. On the nature of gene innovation: duplication patterns in microbial genomes. , 2003, Molecular biology and evolution.
[14] Masatomo Kobayashi,et al. An Overview of Gibberellin Metabolism Enzyme Genes and Their Related Mutants in Rice1[w] , 2004, Plant Physiology.
[15] J. Sprague,et al. THIOUREA AS A KEY REAGENT FOR THE PREPARATION OF ALIPHATIC SULPHONYL CHLORIDES AND BROMIDES. , 1936, Science.
[16] Julian Adams,et al. Adaptation and major chromosomal changes in populations of Saccharomyces cerevisiae , 1992, Current Genetics.
[17] C. Ueguchi,et al. Multicopy suppression: an approach to understanding intracellular functioning of the protein export system , 1992, Journal of bacteriology.
[18] S. K. Shapira,et al. The use of genetic complementation in the study of eukaryotic macromolecular evolution: Rate of spontaneous gene duplication at two loci ofDrosophila melanogaster , 2005, Journal of Molecular Evolution.
[19] J. Haldane,et al. The Part Played by Recurrent Mutation in Evolution , 1933, The American Naturalist.
[20] D. Straus,et al. Selection for a large genetic duplication in Salmonella typhimurium. , 1975, Genetics.
[21] S. Hooper,et al. Gene Import or Deletion: A Study of the Different Genes in Escherichia coli Strains K12 and O157:H7 , 2002, Journal of Molecular Evolution.
[22] Junhyong Kim,et al. The Cobweb of Life Revealed by Genome-Scale Estimates of Horizontal Gene Transfer , 2005, PLoS biology.
[23] J. Wise,et al. Metallothionein gene duplications and metal tolerance in natural populations of Drosophila melanogaster. , 1987, Genetics.
[24] E. Neidle,et al. Genome plasticity in Acinetobacter: new degradative capabilities acquired by the spontaneous amplification of large chromosomal segments , 2003, Molecular microbiology.
[25] T. Todo,et al. Genetic-molecular basis for a simple Drosophila melanogaster somatic system that detects environmental mutagens. , 1986, Proceedings of the National Academy of Sciences of the United States of America.
[26] E. Stahl,et al. Evolutionary Dynamics of Plant R-Genes , 2001, Science.
[27] H. Bunn,et al. Hemoglobin: Molecular, Genetic and Clinical Aspects , 1984 .
[28] J. Drake,et al. Rates of spontaneous mutation. , 1998, Genetics.
[29] S. Collin,et al. Opsins: Evolution in Waiting , 2005, Current Biology.
[30] M. Lynch,et al. The Origins of Genome Complexity , 2003, Science.
[31] J. Roth,et al. Amplification–mutagenesis: Evidence that “directed” adaptive mutation and general hypermutability result from growth with a selected gene amplification , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[32] J. Oakeshott,et al. Multiple Mutations and Gene Duplications Conferring Organophosphorus Insecticide Resistance Have Been Selected at the Rop-1 Locus of the Sheep Blowfly, Lucilia cuprina , 2005, Journal of Molecular Evolution.
[33] J. B. Spofford. Heterosis and the Evolution of Duplications , 1969, The American Naturalist.
[34] Dr. Susumu Ohno. Evolution by Gene Duplication , 1970, Springer Berlin Heidelberg.
[35] F. Nosten,et al. Recurrent gene amplification and soft selective sweeps during evolution of multidrug resistance in malaria parasites. , 2006, Molecular biology and evolution.
[36] D. Herschlag,et al. Catalytic promiscuity and the evolution of new enzymatic activities. , 1999, Chemistry & biology.
[37] A F Bennett,et al. Genetic architecture of thermal adaptation in Escherichia coli. , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[38] J. Cairns,et al. Adaptive reversion of a frameshift mutation in Escherichia coli. , 1991, Genetics.
[39] Michael Lynch,et al. The Origin of Interspecific Genomic Incompatibility via Gene Duplication , 2000, The American Naturalist.
[40] A. Khodursky,et al. Evolutionary genomics of ecological specialization. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[41] M. Lynch,et al. The evolutionary fate and consequences of duplicate genes. , 2000, Science.
[42] A. Force,et al. The probability of duplicate gene preservation by subfunctionalization. , 2000, Genetics.
[43] B C Meyers,et al. Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. , 1998, Genome research.
[44] A. Novick,et al. The genetic basis of hyper-synthesis of beta-galactosidase. , 1963, Genetics.
[45] T. Ohta,et al. On some principles governing molecular evolution. , 1974, Proceedings of the National Academy of Sciences of the United States of America.
[46] R. Veitia,et al. Exploring the etiology of haploinsufficiency. , 2002, BioEssays : news and reviews in molecular, cellular and developmental biology.
[47] M. P. Francino,et al. An adaptive radiation model for the origin of new gene functions , 2005, Nature Genetics.
[48] G. Wagner,et al. Hox cluster duplications and the opportunity for evolutionary novelties , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[49] J. Welch,et al. Tandem gene amplification mediates copper resistance in yeast. , 1982, Proceedings of the National Academy of Sciences of the United States of America.
[50] A. Clark,et al. Invasion and maintenance of a gene duplication. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[51] Carolyn J. Brown,et al. A comprehensive analysis of common copy-number variations in the human genome. , 2007, American journal of human genetics.
[52] J R Roth,et al. Role of gene duplications in the adaptation of Salmonella typhimurium to growth on limiting carbon sources. , 1989, Genetics.
[53] J. Overbaugh,et al. The origin of mutants , 1988, Nature.
[54] R. Jensen. Enzyme recruitment in evolution of new function. , 1976, Annual review of microbiology.
[55] W. E. Ritter. AS TO THE CAUSES OF EVOLUTION. , 1923, Science.
[56] H. Ochman,et al. Lateral gene transfer and the nature of bacterial innovation , 2000, Nature.
[57] R. Veitia,et al. Gene Dosage Balance in Cellular Pathways , 2004, Genetics.
[58] U. Bornscheuer,et al. Catalytic promiscuity in biocatalysis: using old enzymes to form new bonds and follow new pathways. , 2004, Angewandte Chemie.
[59] D. Gordenin,et al. Factors affecting inverted repeat stimulation of recombination and deletion in Saccharomyces cerevisiae. , 1998, Genetics.
[60] H. Ochman,et al. Chromosomal Changes during Experimental Evolution in Laboratory Populations of Escherichia coli , 1999, Journal of bacteriology.
[61] F. Neidhardt,et al. Escherichia Coli and Salmonella: Typhimurium Cellular and Molecular Biology , 1987 .
[62] S. Normark,et al. Recombination between short DNA homologies causes tandem duplication , 1981, Nature.
[63] S. Copley. Enzymes with extra talents: moonlighting functions and catalytic promiscuity. , 2003, Current opinion in chemical biology.
[64] Martin A. Nowak,et al. Evolution of genetic redundancy , 1997, Nature.
[65] Laureana Rebordinos,et al. Genome-wide amplifications caused by chromosomal rearrangements play a major role in the adaptive evolution of natural yeast. , 2003, Genetics.
[66] R Palacios,et al. Gene amplification and genomic plasticity in prokaryotes. , 1997, Annual review of genetics.
[67] A. Albertini,et al. Gene amplification in the lac region of E. coli , 1984, Cell.
[68] A. Force,et al. Preservation of duplicate genes by complementary, degenerative mutations. , 1999, Genetics.
[69] J. Roth,et al. Origin of mutations under selection: the adaptive mutation controversy. , 2006, Annual review of microbiology.
[70] David Botstein,et al. Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[71] Detlef Weigel,et al. Opsin gene duplication and diversification in the guppy, a model for sexual selection , 2007, Proceedings of the Royal Society B: Biological Sciences.
[72] Hongyue Dai,et al. Widespread aneuploidy revealed by DNA microarray expression profiling , 2000, Nature Genetics.
[73] C M Berg,et al. Acquisition of new metabolic capabilities: multicopy suppression by cloned transaminase genes in Escherichia coli K-12. , 1988, Gene.
[74] T. James,et al. Aneuploidy and copy number breakpoints in the genome of lager yeasts mapped by microarray hybridisation , 2004, Current Genetics.
[75] P. Hansche,et al. Gene duplication as a mechanism of genetic adaptation in Saccharomyces cerevisiae. , 1975, Genetics.
[76] R. Mortlock. Microorganisms as Model Systems for Studying Evolution , 1984, Monographs in Evolutionary Biology.
[77] C. Pál,et al. Dosage sensitivity and the evolution of gene families in yeast , 2003, Nature.
[78] A. Sturtevant. The Effects of Unequal Crossing over at the Bar Locus in Drosophila. , 1925, Genetics.
[79] R. Raines,et al. Identifying latent enzyme activities: substrate ambiguity within modern bacterial sugar kinases. , 2004, Biochemistry.
[80] B. Rovin,et al. The Influence of CCL 3 L 1 Gene – Containing Segmental Duplications on HIV-1 / AIDS Susceptibility , 2009 .
[81] C. DeLisi,et al. Predictions of gene family distributions in microbial genomes: evolution by gene duplication and modification. , 2000, Physical review letters.
[82] Dan S. Tawfik,et al. The 'evolvability' of promiscuous protein functions , 2005, Nature Genetics.
[83] E. Tischer,et al. Herbicide-resistant alfalfa cells: an example of gene amplification in plants. , 1984, Journal of molecular and applied genetics.
[84] J. Mekalanos. Duplication and amplification of toxin genes in Vibrio cholerae , 1983, Cell.
[85] A. Hughes. The evolution of functionally novel proteins after gene duplication , 1994, Proceedings of the Royal Society of London. Series B: Biological Sciences.