Trade-off between Multiple Constraints Enables Simultaneous Formation of Modules and Hubs in Neural Systems

The formation of the complex network architecture of neural systems is subject to multiple structural and functional constraints. Two obvious but apparently contradictory constraints are low wiring cost and high processing efficiency, characterized by short overall wiring length and a small average number of processing steps, respectively. Growing evidence shows that neural networks are results from a trade-off between physical cost and functional value of the topology. However, the relationship between these competing constraints and complex topology is not well understood quantitatively. We explored this relationship systematically by reconstructing two known neural networks, Macaque cortical connectivity and C. elegans neuronal connections, from combinatory optimization of wiring cost and processing efficiency constraints, using a control parameter , and comparing the reconstructed networks to the real networks. We found that in both neural systems, the reconstructed networks derived from the two constraints can reveal some important relations between the spatial layout of nodes and the topological connectivity, and match several properties of the real networks. The reconstructed and real networks had a similar modular organization in a broad range of , resulting from spatial clustering of network nodes. Hubs emerged due to the competition of the two constraints, and their positions were close to, and partly coincided, with the real hubs in a range of values. The degree of nodes was correlated with the density of nodes in their spatial neighborhood in both reconstructed and real networks. Generally, the rebuilt network matched a significant portion of real links, especially short-distant ones. These findings provide clear evidence to support the hypothesis of trade-off between multiple constraints on brain networks. The two constraints of wiring cost and processing efficiency, however, cannot explain all salient features in the real networks. The discrepancy suggests that there are further relevant factors that are not yet captured here.

[1]  L. Pinneo On noise in the nervous system. , 1966, Psychological review.

[2]  S. Brenner,et al.  The neural circuit for touch sensitivity in Caenorhabditis elegans , 1985, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[3]  S. Brenner,et al.  The structure of the nervous system of the nematode Caenorhabditis elegans. , 1986, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[4]  William H. Press,et al.  Numerical recipes , 1990 .

[5]  G. Mitchison Neuronal branching patterns and the economy of cortical wiring , 1991, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[6]  D. J. Felleman,et al.  Distributed hierarchical processing in the primate cerebral cortex. , 1991, Cerebral cortex.

[7]  Malcolm P. Young,et al.  Objective analysis of the topological organization of the primate cortical visual system , 1992, Nature.

[8]  M. Young The organization of neural systems in the primate cerebral cortex , 1993, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[9]  C Cherniak,et al.  Component placement optimization in the brain , 1991, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[10]  Eytan Domany,et al.  Temporal aspects of coding and information processing in biological systems , 1994 .

[11]  Christoph von der Malsburg,et al.  The Correlation Theory of Brain Function , 1994 .

[12]  C. Blakemore,et al.  Analysis of connectivity in the cat cerebral cortex , 1995, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[13]  S. Bressler Large-scale cortical networks and cognition , 1995, Brain Research Reviews.

[14]  C. Cherniak Neural component placement , 1995, Trends in Neurosciences.

[15]  E. Hedgecock,et al.  Neuroglia and Pioneer Neurons Express UNC-6 to Provide Global and Local Netrin Cues for Guiding Migrations in C. elegans , 1996, Neuron.

[16]  A. Pestronk Histology of the Nervous System of Man and Vertebrates , 1997, Neurology.

[17]  Rob R. de Ruyter van Steveninck,et al.  The metabolic cost of neural information , 1998, Nature Neuroscience.

[18]  M. Mesulam,et al.  From sensation to cognition. , 1998, Brain : a journal of neurology.

[19]  Duncan J. Watts,et al.  Collective dynamics of ‘small-world’ networks , 1998, Nature.

[20]  A. Toga,et al.  The Rhesus Monkey Brain in Stereotaxic Coordinates , 1999 .

[21]  Anthony Randal McIntosh,et al.  Towards a network theory of cognition , 2000, Neural Networks.

[22]  M P Young,et al.  Anatomical connectivity defines the organization of clusters of cortical areas in the macaque monkey and the cat. , 2000, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[23]  M. Nonet,et al.  rpm-1, A Conserved Neuronal Gene that Regulates Targeting and Synaptogenesis in C. elegans , 2000, Neuron.

[24]  Adelbert Ames,et al.  CNS energy metabolism as related to function , 2000, Brain Research Reviews.

[25]  Dmitri B. Chklovskii,et al.  Orientation Preference Patterns in Mammalian Visual Cortex A Wire Length Minimization Approach , 2001, Neuron.

[26]  J. Karbowski Optimal wiring principle and plateaus in the degree of separation for cortical neurons. , 2001, Physical review letters.

[27]  T. Sejnowski,et al.  Correlated neuronal activity and the flow of neural information , 2001, Nature Reviews Neuroscience.

[28]  Albert-László Barabási,et al.  Statistical mechanics of complex networks , 2001, ArXiv.

[29]  M E J Newman,et al.  Community structure in social and biological networks , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[30]  Dmitri B. Chklovskii,et al.  Wiring Optimization in Cortical Circuits , 2002, Neuron.

[31]  Karl J. Friston,et al.  PHRENOLOGY : What Can Neuroimaging Tell Us About Distributed Circuitry ? , 2005 .

[32]  A. Barabasi,et al.  Hierarchical Organization of Modularity in Metabolic Networks , 2002, Science.

[33]  Vitaly A Klyachko,et al.  Connectivity optimization and the positioning of cortical areas , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[34]  Terrence J Sejnowski,et al.  Communication in Neuronal Networks , 2003, Science.

[35]  D. Chklovskii,et al.  Exact Solution for the Optimal Neuronal Layout Problem , 2004, Neural Computation.

[36]  Michael J. Berry,et al.  Network information and connected correlations. , 2003, Physical review letters.

[37]  Kazuyuki Aihara,et al.  Global and local synchrony of coupled neurons in small-world networks , 2004, Biological Cybernetics.

[38]  Raul Rodriguez-Esteban,et al.  Global optimization of cerebral cortex layout. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[39]  M E J Newman,et al.  Fast algorithm for detecting community structure in networks. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

[40]  G. Buzsáki,et al.  Interneuron Diversity series: Circuit complexity and axon wiring economy of cortical interneurons , 2004, Trends in Neurosciences.

[41]  Christopher Cherniak,et al.  Local optimization of neuron arbors , 1992, Biological Cybernetics.

[42]  Marcus Kaiser,et al.  Spatial growth of real-world networks. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

[43]  O. Sporns,et al.  Organization, development and function of complex brain networks , 2004, Trends in Cognitive Sciences.

[44]  D. Chklovskii,et al.  Maps in the brain: what can we learn from them? , 2004, Annual review of neuroscience.

[45]  M. de Bono,et al.  Neuronal substrates of complex behaviors in C. elegans. , 2005, Annual review of neuroscience.

[46]  E. Bullmore,et al.  Undirected graphs of frequency-dependent functional connectivity in whole brain networks , 2005, Philosophical Transactions of the Royal Society B: Biological Sciences.

[47]  Cori Bargmann,et al.  A circuit for navigation in Caenorhabditis elegans , 2005 .

[48]  Marcus Kaiser,et al.  Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems , 2006, PLoS Comput. Biol..

[49]  Jürgen Kurths,et al.  Structural and functional clusters of complex brain networks , 2006 .

[50]  G. Striedter Précis of Principles of Brain Evolution , 2006, Behavioral and Brain Sciences.

[51]  E. Bullmore,et al.  A Resilient, Low-Frequency, Small-World Human Brain Functional Network with Highly Connected Association Cortical Hubs , 2006, The Journal of Neuroscience.

[52]  Michael J. Berry,et al.  Weak pairwise correlations imply strongly correlated network states in a neural population , 2005, Nature.

[53]  Luciano da Fontoura Costa,et al.  Predicting the connectivity of primate cortical networks from topological and spatial node properties , 2007, BMC Systems Biology.

[54]  D. Chklovskii,et al.  Wiring optimization can relate neuronal structure and function. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[55]  Danielle Smith Bassett,et al.  Small-World Brain Networks , 2006, The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry.

[56]  Changsong Zhou,et al.  Hierarchical organization unveiled by functional connectivity in complex brain networks. , 2006, Physical review letters.

[57]  Yong-Yeol Ahn,et al.  Wiring cost in the organization of a biological neuronal network , 2005, q-bio/0505009.

[58]  Peter Andras,et al.  Simulation of robustness against lesions of cortical networks , 2007, The European journal of neuroscience.

[59]  Marcus Kaiser,et al.  Clustered organization of cortical connectivity , 2007, Neuroinformatics.

[60]  Michael I. Ham,et al.  Functional structure of cortical neuronal networks grown in vitro. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.

[61]  H. Berendse,et al.  The application of graph theoretical analysis to complex networks in the brain , 2007, Clinical Neurophysiology.

[62]  Cornelis J Stam,et al.  Graph theoretical analysis of complex networks in the brain , 2007, Nonlinear biomedical physics.

[63]  Cori Bargmann,et al.  Microfluidics for in vivo imaging of neuronal and behavioral activity in Caenorhabditis elegans , 2007, Nature Methods.

[64]  C. Stam,et al.  Small-world networks and functional connectivity in Alzheimer's disease. , 2006, Cerebral cortex.

[65]  A. Pérez-Escudero,et al.  Optimally wired subnetwork determines neuroanatomy of Caenorhabditis elegans , 2007, Proceedings of the National Academy of Sciences.

[66]  Olaf Sporns,et al.  Network structure of cerebral cortex shapes functional connectivity on multiple time scales , 2007, Proceedings of the National Academy of Sciences.

[67]  Marcus Kaiser,et al.  Organization and Function of Complex Cortical Networks , 2007 .

[68]  O. Sporns,et al.  Identification and Classification of Hubs in Brain Networks , 2007, PloS one.

[69]  Edward T. Bullmore,et al.  Efficiency and Cost of Economical Brain Functional Networks , 2007, PLoS Comput. Biol..

[70]  G. Marcus,et al.  The topographic brain: from neural connectivity to cognition , 2007, Trends in Neurosciences.

[71]  Rolf Kötter,et al.  Online retrieval, processing, and visualization of primate connectivity data from the CoCoMac Database , 2007, Neuroinformatics.

[72]  Marcus Kaiser,et al.  Brain architecture: a design for natural computation , 2007, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[73]  Lester Melie-García,et al.  Characterizing brain anatomical connections using diffusion weighted MRI and graph theory , 2007, NeuroImage.

[74]  Angelo Bifone,et al.  Community structure and modularity in networks of correlated brain activity. , 2007, Magnetic resonance imaging.

[75]  Yong He,et al.  Disrupted small-world networks in schizophrenia. , 2008, Brain : a journal of neurology.

[76]  A. Pérez-Villalba Rhythms of the Brain, G. Buzsáki. Oxford University Press, Madison Avenue, New York (2006), Price: GB £42.00, p. 448, ISBN: 0-19-530106-4 , 2008 .

[77]  Lester Melie-García,et al.  Studying the human brain anatomical network via diffusion-weighted MRI and Graph Theory , 2008, NeuroImage.

[78]  O. Sporns,et al.  Mapping the Structural Core of Human Cerebral Cortex , 2008, PLoS biology.

[79]  E A Leicht,et al.  Community structure in directed networks. , 2007, Physical review letters.

[80]  Alan C. Evans,et al.  Structural Insights into Aberrant Topological Patterns of Large-Scale Cortical Networks in Alzheimer's Disease , 2008, The Journal of Neuroscience.

[81]  Danielle S Bassett,et al.  Cognitive fitness of cost-efficient brain functional networks , 2009, Proceedings of the National Academy of Sciences.

[82]  Edward T. Bullmore,et al.  Age-related changes in modular organization of human brain functional networks , 2009, NeuroImage.

[83]  K. Worsley,et al.  Impaired small-world efficiency in structural cortical networks in multiple sclerosis associated with white matter lesion load. , 2009, Brain : a journal of neurology.

[84]  Mark E. J. Newman,et al.  Power-Law Distributions in Empirical Data , 2007, SIAM Rev..

[85]  R. Kahn,et al.  Efficiency of Functional Brain Networks and Intellectual Performance , 2009, The Journal of Neuroscience.

[86]  S. Rombouts,et al.  Hierarchical functional modularity in the resting‐state human brain , 2009, Human brain mapping.

[87]  O. Sporns,et al.  Complex brain networks: graph theoretical analysis of structural and functional systems , 2009, Nature Reviews Neuroscience.

[88]  Alan C. Evans,et al.  Mapping anatomical connectivity patterns of human cerebral cortex using in vivo diffusion tensor imaging tractography. , 2009, Cerebral cortex.

[89]  Jun Li,et al.  Brain Anatomical Network and Intelligence , 2009, NeuroImage.

[90]  Benjamin H. Good,et al.  Performance of modularity maximization in practical contexts. , 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.

[91]  R. Pan,et al.  Mesoscopic Organization Reveals the Constraints Governing Caenorhabditis elegans Nervous System , 2009, PloS one.

[92]  Yong He,et al.  Diffusion Tensor Tractography Reveals Abnormal Topological Organization in Structural Cortical Networks in Alzheimer's Disease , 2010, The Journal of Neuroscience.

[93]  I. Deary,et al.  The neuroscience of human intelligence differences , 2010, Nature Reviews Neuroscience.

[94]  Péter Buzás,et al.  Neocortical Axon Arbors Trade-off Material and Conduction Delay Conservation , 2010, PLoS Comput. Biol..

[95]  Olaf Sporns,et al.  Can structure predict function in the human brain? , 2010, NeuroImage.

[96]  Geraint Rees,et al.  The cognitive neuroscience of consciousness , 2010, Cognitive neuroscience.

[97]  Andrei G. Vlassenko,et al.  Regional aerobic glycolysis in the human brain , 2010, Proceedings of the National Academy of Sciences.

[98]  E. Bullmore,et al.  Functional Connectivity and Brain Networks in Schizophrenia , 2010, The Journal of Neuroscience.

[99]  Simon W. Moore,et al.  Efficient Physical Embedding of Topologically Complex Information Processing Networks in Brains and Computer Circuits , 2010, PLoS Comput. Biol..

[100]  Gorka Zamora-López,et al.  Cortical Hubs Form a Module for Multisensory Integration on Top of the Hierarchy of Cortical Networks , 2009, Front. Neuroinform..

[101]  M. V. D. Heuvel,et al.  Exploring the brain network: A review on resting-state fMRI functional connectivity , 2010, European Neuropsychopharmacology.

[102]  P A Robinson,et al.  Geometric effects on complex network structure in the cortex. , 2011, Physical review letters.

[103]  Lav R. Varshney,et al.  Structural Properties of the Caenorhabditis elegans Neuronal Network , 2009, PLoS Comput. Biol..

[104]  J. Kurths,et al.  Exploring Brain Function from Anatomical Connectivity , 2011, Front. Neurosci..

[105]  Olaf Sporns,et al.  THE HUMAN CONNECTOME: A COMPLEX NETWORK , 2011, Schizophrenia Research.

[106]  O. Sporns,et al.  The economy of brain network organization , 2012, Nature Reviews Neuroscience.

[107]  J. Rapoport,et al.  Simple models of human brain functional networks , 2012, Proceedings of the National Academy of Sciences.

[108]  Mason A. Porter,et al.  Robust Detection of Dynamic Community Structure in Networks , 2012, Chaos.

[109]  Nikola T. Markov,et al.  A Weighted and Directed Interareal Connectivity Matrix for Macaque Cerebral Cortex , 2012, Cerebral cortex.