Evaluation of structural and evolutionary contributions to deleterious mutation prediction.

[1]  S. Henikoff,et al.  Predicting deleterious amino acid substitutions. , 2001, Genome research.

[2]  J. Moult,et al.  SNPs, protein structure, and disease , 2001, Human mutation.

[3]  Frances H. Arnold,et al.  Computational method to reduce the search space for directed protein evolution , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[4]  D. Chasman,et al.  Predicting the functional consequences of non-synonymous single nucleotide polymorphisms: structure-based assessment of amino acid variation. , 2001, Journal of molecular biology.

[5]  Warren C. Lathe,et al.  Prediction of deleterious human alleles. , 2001, Human molecular genetics.

[6]  D. Baker,et al.  Prospects for ab initio protein structural genomics. , 2001, Journal of molecular biology.

[7]  A. Panchenko,et al.  Combination of threading potentials and sequence profiles improves fold recognition. , 2000, Journal of molecular biology.

[8]  S. Henikoff,et al.  Amino acid substitution matrices. , 2000, Advances in protein chemistry.

[9]  T. N. Bhat,et al.  The Protein Data Bank , 2000, Nucleic Acids Res..

[10]  Rolf Apweiler,et al.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 , 2000, Nucleic Acids Res..

[11]  A. Murzin.  Structure classification‐based assessment of CASP3 predictions for the fold recognition targets , 1999, Proteins.

[12]  A. Panchenko,et al.  Threading with explicit models for evolutionary conservation of structure and sequence , 1999, Proteins.

[13]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[14]  Rolf Apweiler,et al.  The SWISS-PROT protein sequence data bank and its supplement TrEMBL , 1997, Nucleic Acids Res..

[15]  D. Fischer,et al.  Protein fold recognition using sequence‐derived predictions , 1996, Protein science : a publication of the Protein Society.

[16]  F. Cohen,et al.  An evolutionary trace method defines binding surfaces common to protein families. , 1996, Journal of molecular biology.

[17]  S. Altschul,et al.  Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[18]  B. Rost,et al.  Conservation and prediction of solvent accessibility in protein families , 1994, Proteins.

[19]  C Cruz,et al.  Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence. , 1994, Journal of molecular biology.

[20]  S. Henikoff,et al.  Amino acid substitution matrices from protein blocks. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[21]  U. Hobohm,et al.  Selection of representative protein data sets , 1992, Protein science : a publication of the Protein Society.

[22]  S. Henikoff,et al.  Automated assembly of protein blocks for database searching. , 1991, Nucleic acids research.

[23]  S. Bouvier,et al.  Systematic mutation of bacteriophage T4 lysozyme. , 1991, Journal of molecular biology.

[24]  Marianne Manchester,et al.  Complete mutagenesis of the HIV-1 protease , 1989, Nature.

[25]  Leo Breiman,et al.  Classification and Regression Trees , 1984 .

[26]  W. Kabsch,et al.  Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features , 1983, Biopolymers.