Fisher information theory for parameter estimation in single molecule microscopy: tutorial.
暂无分享,去创建一个
[1] A H Greenaway,et al. Simultaneous multiplane imaging with a distorted diffraction grating. , 1999, Applied optics.
[2] Keith A. Lidke,et al. Fast, single-molecule localization that achieves theoretically minimum uncertainty , 2010, Nature Methods.
[3] Sripad Ram,et al. A Stochastic Analysis of Performance Limits for Optical Microscopes , 2006, Multidimens. Syst. Signal Process..
[4] J. Hynecek,et al. Excess noise and other important characteristics of low light level imaging using charge multiplying CCDs , 2003 .
[5] S. Ram,et al. Ultrahigh accuracy imaging modality for super-localization microscopy , 2013, Nature Methods.
[6] Sripad Ram,et al. How accurately can a single molecule be localized in three dimensions using a fluorescence microscope? , 2005, SPIE BiOS.
[7] J. Zerubia,et al. Gaussian approximations of fluorescence microscope point-spread function models. , 2007, Applied optics.
[8] Anthony J. Manzo,et al. Do-it-yourself guide: how to use the modern single-molecule toolkit , 2008, Nature Methods.
[9] Fluorescent Microspheres as Point Sources: A Localization Study , 2015, PloS one.
[10] R. Cherry,et al. Anomalous diffusion of major histocompatibility complex class I molecules on HeLa cells determined by single particle tracking. , 1999, Biophysical journal.
[11] S. Hess,et al. Three-dimensional sub–100 nm resolution fluorescence microscopy of thick samples , 2008, Nature Methods.
[12] M. Unser,et al. A maximum-likelihood formalism for sub-resolution axial localization of fluorescent nanoparticles. , 2005, Optics express.
[13] J. N. Hollenhorst. A theory of multiplication noise , 1990 .
[14] A. Berglund. Statistics of camera-based single-particle tracking. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.
[15] Adam S. Backer,et al. Optimal point spread function design for 3D imaging. , 2014, Physical review letters.
[16] J. Bewersdorf,et al. Three dimensional single molecule localization using a phase retrieved pupil function. , 2013, Optics express.
[17] Michael W. Davidson,et al. Video-rate nanoscopy enabled by sCMOS camera-specific single-molecule localization algorithms , 2013, Nature Methods.
[18] X. Michalet. Mean square displacement analysis of single-particle trajectories with localization error: Brownian motion in an isotropic medium. , 2010 .
[19] S. Zeng,et al. Localization capability and limitation of electron-multiplying charge-coupled, scientific complementary metal-oxide semiconductor, and charge-coupled devices for superresolution imaging. , 2010, Journal of biomedical optics.
[20] S. Hess,et al. Precisely and accurately localizing single emitters in fluorescence microscopy , 2014, Nature Methods.
[21] D. P. Fromm,et al. Methods of single-molecule fluorescence spectroscopy and microscopy , 2003 .
[22] M K Cheezum,et al. Quantitative comparison of algorithms for tracking single fluorescent particles. , 2001, Biophysical journal.
[23] Jerry Chao,et al. Designing the focal plane spacing for multifocal plane microscopy. , 2014, Optics express.
[24] S. Stallinga,et al. Position and orientation estimation of fixed dipole emitters using an effective Hermite point spread function model. , 2012, Optics express.
[25] Alexandr Jonás,et al. Three-dimensional tracking of fluorescent nanoparticles with subnanometer precision by use of off-focus imaging. , 2003, Optics letters.
[26] Michael J Rust,et al. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM) , 2006, Nature Methods.
[27] Jerry Chao,et al. Fisher information matrix for branching processes with application to electron-multiplying charge-coupled devices , 2012, Multidimens. Syst. Signal Process..
[28] Yale E Goldman,et al. Parallax: high accuracy three-dimensional single molecule tracking using split images. , 2009, Nano letters.
[29] Michael D. Mason,et al. Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. , 2006, Biophysical journal.
[30] S. Ram,et al. Beyond Rayleigh's criterion: a resolution measure with application to single-molecule microscopy. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[31] B.E.A. Saleh,et al. Noise properties and time response of the staircase avalanche photodiode , 1985, IEEE Transactions on Electron Devices.
[32] C. Mackay,et al. Photon counting strategies with low-light-level CCDs , 2003, astro-ph/0307305.
[33] X. Michalet,et al. Optimal diffusion coefficient estimation in single-particle tracking. , 2012 .
[34] C. Helstrom,et al. Compensation for readout noise in CCD images , 1995 .
[35] S. Ram,et al. Localization accuracy in single-molecule microscopy. , 2004, Biophysical journal.
[36] Matthew R. Foreman,et al. Fundamental limits in single-molecule orientation measurements , 2011 .
[37] S. Ram,et al. Simultaneous imaging of different focal planes in fluorescence microscopy for the study of cellular dynamics in three dimensions , 2004, IEEE Transactions on NanoBioscience.
[38] Joaquim Salvi,et al. Review of CMOS image sensors , 2006, Microelectron. J..
[39] L. Holtzer,et al. Nanometric three-dimensional tracking of individual quantum dots in cells , 2007 .
[40] I. Tolic-Nørrelykke,et al. A divide and conquer strategy for the maximum likelihood localization of low intensity objects. , 2014, Optics express.
[41] E. Isacoff,et al. Subunit counting in membrane-bound proteins , 2007, Nature Methods.
[42] Zhuo Gan,et al. Elucidation of intracellular recycling pathways leading to exocytosis of the Fc receptor, FcRn, by using multifocal plane microscopy , 2007, Proceedings of the National Academy of Sciences.
[43] Michael Unser,et al. Super-resolution orientation estimation and localization of fluorescent dipoles using 3-D steerable filters. , 2009, Optics express.
[44] X. Xie,et al. Probing Gene Expression in Live Cells, One Protein Molecule at a Time , 2006, Science.
[45] H. P. Kao,et al. Tracking of single fluorescent particles in three dimensions: use of cylindrical optics to encode particle position. , 1994, Biophysical journal.
[46] W. E. Moerner,et al. Localizing and tracking single nanoscale emitters in three dimensions with high spatiotemporal resolution using a double-helix point spread function. , 2010, Nano letters.
[47] Jerry Chao,et al. Quantitative study of single molecule location estimation techniques. , 2009, Optics express.
[48] Alexander Y Katsov,et al. Fast and sensitive multi-color 3D imaging using aberration-corrected multi-focus microscopy , 2012, Nature Methods.
[49] Jerry Chao,et al. A comparative study of high resolution microscopy imaging modalities using a three-dimensional resolution measure. , 2009, Optics express.
[50] Zhiping Lin,et al. Effect of time discretization of the imaging process on the accuracy of trajectory estimation in fluorescence microscopy. , 2014, Optics express.
[51] Jerry Chao,et al. A novel approach to determining the three-dimensional location of microscopic objects with applications to 3D particle tracking , 2007, SPIE BiOS.
[52] R. Piestun,et al. Three dimensional tracking of fluorescent microparticles using a photon-limited double-helix response system. , 2008, Optics express.
[53] U. Kubitscheck,et al. Autonomy and robustness of translocation through the nuclear pore complex: a single-molecule study , 2008, The Journal of cell biology.
[54] S. Ram,et al. A resolution measure for three-dimensional microscopy. , 2009, Optics communications.
[55] S. Stallinga,et al. Accuracy of the gaussian point spread function model in 2D localization microscopy. , 2010, Optics express.
[56] A Kusumi,et al. Single molecule imaging of green fluorescent proteins in living cells: E-cadherin forms oligomers on the free cell surface. , 2001, Biophysical journal.
[57] K. Neyts,et al. The influence of movement on the localization precision of sub‐resolution particles in fluorescence microscopy , 2012, Journal of biophotonics.
[58] A. Small,et al. Fluorophore localization algorithms for super-resolution microscopy , 2014, Nature Methods.
[59] H. Flyvbjerg,et al. Optimized localization-analysis for single-molecule tracking and super-resolution microscopy , 2010, Nature Methods.
[60] Raimund J Ober,et al. Exocytosis of IgG as mediated by the receptor, FcRn: an analysis at the single-molecule level. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[61] S. Ram,et al. High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells. , 2008, Biophysical journal.
[62] J. Lippincott-Schwartz,et al. Imaging Intracellular Fluorescent Proteins at Nanometer Resolution , 2006, Science.
[63] M. Heilemann,et al. Subdiffraction-resolution fluorescence imaging with conventional fluorescent probes. , 2008, Angewandte Chemie.
[64] Yoav Y Schechner,et al. Depth from diffracted rotation. , 2006, Optics letters.
[65] J. Hynecek. Impactron-a new solid state image intensifier , 2001 .
[66] Sean B. Andersson,et al. Bias and Precision of the fluoroBancroft Algorithm for Single Particle Localization in Fluorescence Microscopy , 2011, IEEE Transactions on Signal Processing.
[67] W. Webb,et al. Precise nanometer localization analysis for individual fluorescent probes. , 2002, Biophysical journal.
[68] Eric R. Fossum,et al. CMOS image sensors: electronic camera-on-a-chip , 1997 .
[69] Sean Quirin,et al. Limits of 3D dipole localization and orientation estimation for single-molecule imaging: towards Green's tensor engineering. , 2012, Optics express.