Martini: using literature keywords to compare gene sets
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Reinhard Schneider | Adriano Barbosa-Silva | Venkata P. Satagopam | Nigel P. Brown | Theodoros G. Soldatos | Seán I. O’Donoghue | Lars J. Jensen | L. Jensen | N. P. Brown | S. O’Donoghue | Reinhard Schneider | V. Satagopam | A. Barbosa-Silva
[1] C. Ball,et al. Identification of genes periodically expressed in the human cell cycle and their expression in tumors. , 2002, Molecular biology of the cell.
[2] Joaquín Dopazo,et al. The role of the environment in Parkinson's disease. , 1996, Nucleic Acids Res..
[3] B. De Moor,et al. TXTGate: profiling gene groups with text-based information , 2004, Genome Biology.
[4] Gene Ontology Consortium. The Gene Ontology (GO) database and informatics resource , 2003 .
[5] R. West,et al. Frequency of carriers of cystic fibrosis gene among patients with myeloid malignancy and melanoma. , 1991, BMJ.
[6] J. Whang‐Peng,et al. Polyploidy in malignant melanoma , 1970, Cancer.
[7] R. Baron,et al. Melanoma cells stimulate osteoclastogenesis, c-Src expression and osteoblast cytokines. , 2001, European journal of cancer.
[8] R. Fisher. On the Interpretation of χ2 from Contingency Tables, and the Calculation of P , 2010 .
[9] Lloyd J. Old,et al. Cancer/testis antigens, gametogenesis and cancer , 2005, Nature Reviews Cancer.
[10] Ralf Zimmer,et al. Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts , 2005, ECCB/JBI.
[11] Joaquín Dopazo,et al. Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments , 2008, Nucleic Acids Res..
[12] William R. Hersh,et al. A survey of current work in biomedical text mining , 2005, Briefings Bioinform..
[13] Purvesh Khatri,et al. Ontological analysis of gene expression data: current tools, limitations, and open problems , 2005, Bioinform..
[14] S. Eschrich,et al. The gene expression profiles of primary and metastatic melanoma yields a transition point of tumor progression and metastasis , 2008, BMC Medical Genomics.
[15] T. Paull,et al. Activation and regulation of ATM kinase activity in response to DNA double-strand breaks , 2007, Oncogene.
[16] Pierre van der Bruggen,et al. Structure, chromosomal localization, and expression of 12 genes of the MAGE family , 2005, Immunogenetics.
[17] M. Schuemie,et al. Anni 2.0: a multipurpose text-mining tool for the life sciences , 2008, Genome Biology.
[18] Thorsten Schmidt,et al. ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data , 2008, Nucleic Acids Res..
[19] R. Fisher. 019: On the Interpretation of x2 from Contingency Tables, and the Calculation of P. , 1922 .
[20] Kei-Hoi Cheung,et al. Handling multiple testing while interpreting microarrays with the Gene Ontology Database , 2004, BMC Bioinformatics.
[21] Hagit Shatkay,et al. Discovering semantic features in the literature: a foundation for building functional associations , 2006, BMC Bioinformatics.
[22] D. Chaussabel,et al. Mining microarray expression data by literature profiling , 2002, Genome Biology.
[23] Barend Mons,et al. Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation , 2007, BMC Bioinformatics.
[24] Thure Etzold,et al. SRS - an indexing and retrieval tool for flat file data libraries , 1993, Comput. Appl. Biosci..
[25] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[26] J. Boyd,et al. Gene Expression Profiles of Serous, Endometrioid, and Clear Cell Subtypes of Ovarian and Endometrial Cancer , 2005, Clinical Cancer Research.
[27] P. Bork,et al. Co-evolution of transcriptional and post-translational cell-cycle regulation , 2006, Nature.
[28] P. Fisher,et al. mda-9/Syntenin: more than just a simple adapter protein when it comes to cancer metastasis. , 2008, Cancer research.
[29] Maurice Bouwhuis,et al. CoPub: a literature-based keyword enrichment tool for microarray data analysis , 2008, Nucleic Acids Res..
[30] G. Schwartz,et al. Targeting Checkpoint Kinase 1 in Cancer Therapeutics , 2007, Clinical Cancer Research.
[31] Tanya Z. Berardini,et al. The Arabidopsis Information Resource (TAIR): gene structure and function annotation , 2007, Nucleic Acids Res..