EHMT2/G9a-Inhibition Reprograms Cancer-Associated Fibroblasts (CAFs) to a More Differentiated, Less Proliferative and Invasive State

Cancer-associated fibroblasts (CAFs) have previously been shown to play a pivotal role in multiple cancer dynamics, including mediating tumor cell invasion: their pro-invasive secretory profile and ability to remodel the extracellular matrix (ECM) architecture particularly promote tumor progression through tumor cell invasion into surrounding tissue areas and beyond. Given that reduced CAF abundance in tumors correlates with improved outcomes in various cancers, we set out to identify epigenetic targets involved in CAF activation in the tumor-stromal margin to reduce overall tumor aggressiveness. Using the GLAnCE (Gels for Live Analysis of Compartmentalized Environments) co-culture platform, we performed an image-based, phenotypic screen and identified EHMT2 (also known as G9a), an epigenetic enzyme that targets the methylation of histone 3 lysine 9 (H3K9), as the most potent modulator of CAF abundance and CAF-mediated tumor cell invasion. Transcriptomic and functional analysis of EHMT2-inhibited CAFs revealed the involvement of EHMT2 in driving CAFs towards a pro-invasive phenotype. Further, EHMT2 signaling mediated CAF hyperproliferation, a feature that is typically associated with activated fibroblasts present in tumors, but the molecular basis for which has not thus far been identified. This study suggests a role for EHMT2 as a regulator of CAF hyperproliferation within the tumor mass, which in turn magnifies CAF-induced pro-invasive effects on tumor cells.

[1]  M. Tsao,et al.  Single cell analysis reveals transcriptomic features of drug tolerant persisters and stromal adaptation in a patient-derived EGFR-mutated lung adenocarcinoma xenograft model. , 2022, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.

[2]  P. Peixoto,et al.  Chemokine switch regulated by TGF-β1 in cancer-associated fibroblast subsets determines the efficacy of chemo-immunotherapy , 2022, Oncoimmunology.

[3]  S. Corso,et al.  The importance of being CAFs (in cancer resistance to targeted therapies) , 2022, Journal of Experimental & Clinical Cancer Research.

[4]  Jufang Wang,et al.  Cancer-associated fibroblasts in pancreatic ductal adenocarcinoma , 2022, Cell Death & Disease.

[5]  S. Vacher,et al.  Periostin‐ and podoplanin‐positive cancer‐associated fibroblast subtypes cooperate to shape the inflamed tumor microenvironment in aggressive pancreatic adenocarcinoma , 2022, The Journal of pathology.

[6]  J. Mora,et al.  Selective histone methyltransferase G9a inhibition reduces metastatic development of Ewing sarcoma through the epigenetic regulation of NEU1 , 2022, Oncogene.

[7]  L. Ailles,et al.  Modeling the Role of Cancer-Associated Fibroblasts in Tumor Cell Invasion , 2022, Cancers.

[8]  S. Park,et al.  G9a Knockdown Suppresses Cancer Aggressiveness by Facilitating Smad Protein Phosphorylation through Increasing BMP5 Expression in Luminal A Type Breast Cancer , 2022, International journal of molecular sciences.

[9]  N. Gavara,et al.  Disruption of pancreatic stellate cell myofibroblast phenotype promotes pancreatic tumor invasion , 2022, Cell reports.

[10]  Yannick D. Benoit,et al.  Emerging role of G9a in cancer stemness and promises as a therapeutic target , 2021, Oncogenesis.

[11]  Chen Liang,et al.  Crosstalk between cancer-associated fibroblasts and immune cells in the tumor microenvironment: new findings and future perspectives , 2021, Molecular Cancer.

[12]  Lei Wang,et al.  Histone Methyltransferase G9a Promotes the Development of Renal Cancer through Epigenetic Silencing of Tumor Suppressor Gene SPINK5 , 2021, Oxidative medicine and cellular longevity.

[13]  Xiaochen Bo,et al.  clusterProfiler 4.0: A universal enrichment tool for interpreting omics data , 2021, Innovation.

[14]  R. Bourgon,et al.  Cross-tissue organization of the fibroblast lineage , 2021, Nature.

[15]  Robert B A Quinlan,et al.  Chemogenomics for drug discovery: clinical molecules from open access chemical probes , 2021, RSC chemical biology.

[16]  A. Calon,et al.  Determinants and Functions of CAFs Secretome During Cancer Progression and Therapy , 2021, Frontiers in Cell and Developmental Biology.

[17]  E. Wiechec,et al.  CAFs affect the proliferation and treatment response of head and neck cancer spheroids during co-culturing in a unique in vitro model , 2020, Cancer cell international.

[18]  I. Mushtaq,et al.  Targeting EHMT2/ G9a for cancer therapy: progress and perspective. , 2020, European journal of pharmacology.

[19]  Wenzhi Li,et al.  Stromal POSTN induced by TGF-β1 facilitates the migration and invasion of ovarian cancer. , 2020, Gynecologic oncology.

[20]  H. Cui,et al.  Deficiency of G9a Inhibits Cell Proliferation and Activates Autophagy via Transcriptionally Regulating c-Myc Expression in Glioblastoma , 2020, Frontiers in Cell and Developmental Biology.

[21]  M. Falasca,et al.  Cancer-Associated Fibroblasts: Epigenetic Regulation and Therapeutic Intervention in Breast Cancer , 2020, Cancers.

[22]  A. Białas,et al.  More than a Genetic Code: Epigenetics of Lung Fibrosis , 2020, Molecular Diagnosis & Therapy.

[23]  R. Fisher,et al.  Head and Neck Squamous Cell Carcinoma , 2020, Definitions.

[24]  Erin Helms,et al.  Fibroblast Heterogeneity in the Pancreatic Tumor Microenvironment. , 2020, Cancer discovery.

[25]  A. McGuigan,et al.  The life cycle of cancer-associated fibroblasts within the tumour stroma and its importance in disease outcome , 2020, British Journal of Cancer.

[26]  R. Jain,et al.  A framework for advancing our understanding of cancer-associated fibroblasts , 2020, Nature Reviews Cancer.

[27]  M. Saif,et al.  Increased stiffness of the tumor microenvironment in colon cancer stimulates cancer associated fibroblast-mediated prometastatic activin A signaling , 2020, Scientific Reports.

[28]  G. Ligresti,et al.  Targeted regulation of fibroblast state by CRISPR-mediated CEBPA expression , 2019, Respiratory Research.

[29]  M. Zeybel,et al.  Advances in the epigenetics of fibroblast biology and fibrotic diseases. , 2019, Current opinion in pharmacology.

[30]  A. McGuigan,et al.  Gels for Live Analysis of Compartmentalized Environments (GLAnCE): A Tissue Model to Probe Tumour Phenotypes at Tumour-Stroma Interfaces , 2019, bioRxiv.

[31]  Steven L Salzberg,et al.  Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype , 2019, Nature Biotechnology.

[32]  G. Ligresti,et al.  CBX5/G9a/H3K9me-mediated gene repression is essential to fibroblast activation during lung fibrosis. , 2019, JCI insight.

[33]  Kathleen M. Jagodnik,et al.  ChEA3: transcription factor enrichment analysis by orthogonal omics integration , 2019, Nucleic Acids Res..

[34]  S. Knapp,et al.  A chemical toolbox for the study of bromodomains and epigenetic signaling , 2019, Nature Communications.

[35]  Liang Wang,et al.  Resolvin D1 prevents epithelial-mesenchymal transition and reduces the stemness features of hepatocellular carcinoma by inhibiting paracrine of cancer-associated fibroblast-derived COMP , 2019, Journal of Experimental & Clinical Cancer Research.

[36]  M. Masařík,et al.  Effect of tumor microenvironment on pathogenesis of the head and neck squamous cell carcinoma: a systematic review , 2019, Molecular Cancer.

[37]  M. Masařík,et al.  Effect of tumor microenvironment on pathogenesis of the head and neck squamous cell carcinoma: a systematic review , 2019, Molecular Cancer.

[38]  C. Brakebusch,et al.  Cancer-associated fibroblasts: how do they contribute to metastasis? , 2019, Clinical & Experimental Metastasis.

[39]  R. Taneja,et al.  SUMOylation of G9a regulates its function as an activator of myoblast proliferation , 2019, Cell Death & Disease.

[40]  Lei Liu,et al.  FoxM1 Promotes Cell Proliferation, Invasion, and Stem Cell Properties in Nasopharyngeal Carcinoma , 2018, Front. Oncol..

[41]  E. Song,et al.  Turning foes to friends: targeting cancer-associated fibroblasts , 2018, Nature Reviews Drug Discovery.

[42]  M. Najafi,et al.  Extracellular matrix (ECM) stiffness and degradation as cancer drivers , 2018, Journal of cellular biochemistry.

[43]  T. McKinsey,et al.  Epigenetics in Cardiac Fibrosis , 2018, JACC. Basic to translational science.

[44]  Shiming Yang,et al.  Regulation of the master regulator FOXM1 in cancer , 2018, Cell Communication and Signaling.

[45]  E. White,et al.  FOXM1 is a critical driver of lung fibroblast activation and fibrogenesis , 2018, The Journal of clinical investigation.

[46]  A. McGuigan,et al.  A TRACER 3D Co-Culture tumour model for head and neck cancer. , 2018, Biomaterials.

[47]  Joseph G Ibrahim,et al.  Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences , 2018, bioRxiv.

[48]  Raghu Kalluri,et al.  A peek into cancer-associated fibroblasts: origins, functions and translational impact , 2018, Disease Models & Mechanisms.

[49]  Inna Kuperstein,et al.  Fibroblast Heterogeneity and Immunosuppressive Environment in Human Breast Cancer. , 2018, Cancer cell.

[50]  C. Martins,et al.  Cancer-associated fibroblasts induce antigen-specific deletion of CD8+ T Cells to protect tumour cells , 2018, Nature Communications.

[51]  Jennifer A. Ward,et al.  A chemical biology toolbox to study protein methyltransferases and epigenetic signaling , 2018, bioRxiv.

[52]  A. Santi,et al.  Cancer Associated Fibroblasts: The Architects of Stroma Remodeling , 2018, Proteomics.

[53]  S. Richon,et al.  Cancer-associated fibroblasts lead tumor invasion through integrin-β3–dependent fibronectin assembly , 2017, The Journal of cell biology.

[54]  R. Barker,et al.  REST suppression mediates neural conversion of adult human fibroblasts via microRNA‐dependent and ‐independent pathways , 2017, EMBO molecular medicine.

[55]  Peng Zhang,et al.  G9A promotes tumor cell growth and invasion by silencing CASP1 in non-small-cell lung cancer cells , 2017, Cell Death & Disease.

[56]  Hans Clevers,et al.  Distinct populations of inflammatory fibroblasts and myofibroblasts in pancreatic cancer , 2017, The Journal of experimental medicine.

[57]  Liu Ming,et al.  CAF-derived HGF promotes cell proliferation and drug resistance by up-regulating the c-Met/PI3K/Akt and GRP78 signalling in ovarian cancer cells , 2017, Bioscience reports.

[58]  Zhenggang Zhu,et al.  IL-6 secreted by cancer-associated fibroblasts promotes epithelial-mesenchymal transition and metastasis of gastric cancer via JAK2/STAT3 signaling pathway , 2017, Oncotarget.

[59]  P. Schnepp,et al.  Tumor-induced Stromal STAT1 Accelerates Breast Cancer via Deregulating Tissue Homeostasis , 2017, Molecular Cancer Research.

[60]  Dylan M. Marchione,et al.  Impaired H3K36 methylation defines a subset of head and neck squamous cell carcinomas , 2017, Nature Genetics.

[61]  M. Okumura,et al.  IL‐6 Secreted from Cancer‐Associated Fibroblasts Mediates Chemoresistance in NSCLC by Increasing Epithelial‐Mesenchymal Transition Signaling , 2016, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.

[62]  R. Kalluri The biology and function of fibroblasts in cancer , 2016, Nature Reviews Cancer.

[63]  Måns Magnusson,et al.  MultiQC: summarize analysis results for multiple tools and samples in a single report , 2016, Bioinform..

[64]  R. Taneja,et al.  G9a promotes proliferation and inhibits cell cycle exit during myogenic differentiation , 2016, Nucleic acids research.

[65]  B. Lin,et al.  Carcinoma-Associated Fibroblasts Lead the Invasion of Salivary Gland Adenoid Cystic Carcinoma Cells by Creating an Invasive Track , 2016, PloS one.

[66]  S. Antonia,et al.  The anti-fibrotic agent pirfenidone synergizes with cisplatin in killing tumor cells and cancer-associated fibroblasts , 2016, BMC Cancer.

[67]  Ming Yan,et al.  TGFβ3-mediated induction of Periostin facilitates head and neck cancer growth and is associated with metastasis , 2016, Scientific Reports.

[68]  V. Sanz-Moreno,et al.  Epigenetic switch drives the conversion of fibroblasts into proinvasive cancer-associated fibroblasts , 2015, Nature Communications.

[69]  Umar Mahmood,et al.  Depletion of Carcinoma-Associated Fibroblasts and Fibrosis Induces Immunosuppression and Accelerates Pancreas Cancer with Reduced Survival. , 2015, Cancer cell.

[70]  Andrew G. Clark,et al.  Modes of cancer cell invasion and the role of the microenvironment. , 2015, Current opinion in cell biology.

[71]  Y. Sakamoto,et al.  CXCL12/CXCR4 activation by cancer‐associated fibroblasts promotes integrin β1 clustering and invasiveness in gastric cancer , 2015, International journal of cancer.

[72]  H. Date,et al.  Podoplanin‐expressing cancer‐associated fibroblasts lead and enhance the local invasion of cancer cells in lung adenocarcinoma , 2015, International journal of cancer.

[73]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[74]  M. Zeisberg,et al.  Contribution of genetics and epigenetics to progression of kidney fibrosis. , 2014, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.

[75]  W. Coward,et al.  A central role for G9a and EZH2 in the epigenetic silencing of cyclooxygenase-2 in idiopathic pulmonary fibrosis , 2014, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[76]  Stephen A. Sastra,et al.  Stromal elements act to restrain, rather than support, pancreatic ductal adenocarcinoma. , 2014, Cancer cell.

[77]  Gang Li,et al.  DLC1-dependent parathyroid hormone-like hormone inhibition suppresses breast cancer bone metastasis. , 2014, The Journal of clinical investigation.

[78]  Björn Usadel,et al.  Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..

[79]  Yu Sun,et al.  Determination of local and global elastic moduli of valve interstitial cells cultured on soft substrates. , 2013, Journal of biomechanics.

[80]  Jianhua Wang,et al.  Stromal cells in tumor microenvironment and breast cancer , 2013, Cancer and Metastasis Reviews.

[81]  Wei Shi,et al.  featureCounts: an efficient general purpose program for assigning sequence reads to genomic features , 2013, Bioinform..

[82]  Wei Liu,et al.  Cancer-Associated Fibroblasts from Hepatocellular Carcinoma Promote Malignant Cell Proliferation by HGF Secretion , 2013, PloS one.

[83]  B. Parvin,et al.  Breast fibroblasts modulate early dissemination, tumorigenesis, and metastasis through alteration of extracellular matrix characteristics. , 2013, Neoplasia.

[84]  A. Dietz,et al.  Therapeutic effects of deleting cancer-associated fibroblasts in cholangiocarcinoma. , 2013, Cancer research.

[85]  M. Zeisberg,et al.  The role of promoter hypermethylation in fibroblast activation and fibrogenesis , 2013, The Journal of pathology.

[86]  A. Ganesan,et al.  Spiruchostatin A inhibits proliferation and differentiation of fibroblasts from patients with pulmonary fibrosis. , 2012, American journal of respiratory cell and molecular biology.

[87]  Johannes E. Schindelin,et al.  Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.

[88]  J. Licht,et al.  Emerging epigenetic targets and therapies in cancer medicine. , 2012, Cancer discovery.

[89]  E. Mohammadi,et al.  Barriers and facilitators related to the implementation of a physiological track and trigger system: A systematic review of the qualitative evidence , 2017, International journal for quality in health care : journal of the International Society for Quality in Health Care.

[90]  W. K. Kok,et al.  Lysine methyltransferase G9a methylates the transcription factor MyoD and regulates skeletal muscle differentiation , 2012, Proceedings of the National Academy of Sciences.

[91]  Hong Peng,et al.  Interactions between cancer stem cells and their niche govern metastatic colonization , 2011, Nature.

[92]  Ricardo Garcia,et al.  Biomechanical Remodeling of the Microenvironment by Stromal Caveolin-1 Favors Tumor Invasion and Metastasis , 2011, Cell.

[93]  E. Chapman,et al.  Synaptophysin Regulates the Kinetics of Synaptic Vesicle Endocytosis in Central Neurons , 2011, Neuron.

[94]  Y. Toiyama,et al.  Cancer-associated fibroblasts correlate with poor prognosis in rectal cancer after chemoradiotherapy. , 2011, International journal of oncology.

[95]  P. Weinreb,et al.  Stromal features are predictive of disease mortality in oral cancer patients , 2011, The Journal of pathology.

[96]  H. Halfter,et al.  Bex1 is involved in the regeneration of axons after injury , 2010, Journal of neurochemistry.

[97]  E. Giannoni,et al.  Reciprocal activation of prostate cancer cells and cancer-associated fibroblasts stimulates epithelial-mesenchymal transition and cancer stemness. , 2010, Cancer research.

[98]  P. Tonin,et al.  Breast carcinoma-associated fibroblasts rarely contain p53 mutations or chromosomal aberrations. , 2010, Cancer research.

[99]  R. Kalluri,et al.  Methylation determines fibroblast activation and fibrogenesis in the kidney , 2010, Nature Medicine.

[100]  E. Sahai,et al.  A chemical biology screen reveals a role for Rab21-mediated control of actomyosin contractility in fibroblast-driven cancer invasion , 2009, British Journal of Cancer.

[101]  E. Yamamoto,et al.  Significance of stromal desmoplasia and myofibroblast appearance at the invasive front in squamous cell carcinoma of the oral cavity , 2009, Head & neck.

[102]  Gonçalo R. Abecasis,et al.  The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..

[103]  O. Hvalby,et al.  Synapsin-dependent development of glutamatergic synaptic vesicles and presynaptic plasticity in postnatal mouse brain , 2009, Neuroscience.

[104]  S. Elledge,et al.  CDYL bridges REST and histone methyltransferases for gene repression and suppression of cellular transformation. , 2008, Molecular cell.

[105]  Olivier De Wever,et al.  Stromal myofibroblasts are drivers of invasive cancer growth , 2008, International journal of cancer.

[106]  Kylie L. Gorringe,et al.  No evidence of clonal somatic genetic alterations in cancer-associated fibroblasts from human breast and ovarian carcinomas , 2008, Nature Genetics.

[107]  E. Sahai,et al.  Fibroblast-led collective invasion of carcinoma cells with differing roles for RhoGTPases in leading and following cells , 2007, Nature Cell Biology.

[108]  C. Cunningham,et al.  Phase 2 study of talabostat/gemcitabine in Stage IV pancreatic cancer , 2007 .

[109]  M. Monden,et al.  Stromal Myofibroblasts Predict Disease Recurrence for Colorectal Cancer , 2007, Clinical Cancer Research.

[110]  Ying Mei,et al.  The effect of surface chemistry on the formation of thin films of native fibrillar collagen. , 2007, Biomaterials.

[111]  Jun Yao,et al.  Distinct epigenetic changes in the stromal cells of breast cancers , 2005, Nature Genetics.

[112]  M. Teitell,et al.  Functional analysis of the N- and C-terminus of mammalian G9a histone H3 methyltransferase , 2005, Nucleic acids research.

[113]  G. Mandel,et al.  REST and Its Corepressors Mediate Plasticity of Neuronal Gene Chromatin throughout Neurogenesis , 2005, Cell.

[114]  Michael P. Sheetz,et al.  Basic mechanism of three-dimensional collagen fibre transport by fibroblasts , 2005, Nature Cell Biology.

[115]  A. Roopra,et al.  Localized domains of G9a-mediated histone methylation are required for silencing of neuronal genes. , 2004, Molecular cell.

[116]  D. Jäger,et al.  Stromal Antigen Targeting by a Humanised Monoclonal Antibody: An Early Phase II Trial of Sibrotuzumab in Patients with Metastatic Colorectal Cancer , 2003, Oncology Research and Treatment.

[117]  T. Volkert,et al.  E2F integrates cell cycle progression with DNA repair, replication, and G(2)/M checkpoints. , 2002, Genes & development.

[118]  B. Hinz,et al.  Alpha-smooth muscle actin expression upregulates fibroblast contractile activity. , 2001, Molecular biology of the cell.

[119]  A. Nakashima,et al.  Inhibition of H3K9 histone methyltransferase G9a attenuates renal fibrosis and retains klotho expression. , 2016, Kidney international.

[120]  P. Ngo,et al.  Collagen gel contraction assay. , 2006, Methods in molecular biology.