Production of the Marine Carotenoid Astaxanthin by Metabolically Engineered Corynebacterium glutamicum

Astaxanthin, a red C40 carotenoid, is one of the most abundant marine carotenoids. It is currently used as a food and feed additive in a hundred-ton scale and is furthermore an attractive component for pharmaceutical and cosmetic applications with antioxidant activities. Corynebacterium glutamicum, which naturally synthesizes the yellow C50 carotenoid decaprenoxanthin, is an industrially relevant microorganism used in the million-ton amino acid production. In this work, engineering of a genome-reduced C. glutamicum with optimized precursor supply for astaxanthin production is described. This involved expression of heterologous genes encoding for lycopene cyclase CrtY, β-carotene ketolase CrtW, and hydroxylase CrtZ. For balanced expression of crtW and crtZ their translation initiation rates were varied in a systematic approach using different ribosome binding sites, spacing, and translational start codons. Furthermore, β-carotene ketolases and hydroxylases from different marine bacteria were tested with regard to efficient astaxanthin production in C. glutamicum. In shaking flasks, the C. glutamicum strains developed here overproduced astaxanthin with volumetric productivities up to 0.4 mg·L−1·h−1 which are competitive with current algae-based production. Since C. glutamicum can grow to high cell densities of up to 100 g cell dry weight (CDW)·L−1, the recombinant strains developed here are a starting point for astaxanthin production by C. glutamicum.

[1]  D. Molenaar,et al.  A heat shock following electroporation induces highly efficient transformation of Corynebacterium glutamicum with xenogeneic plasmid DNA , 1999, Applied Microbiology and Biotechnology.

[2]  P. Rouvière,et al.  A carotenoid synthesis gene cluster from a non-marine Brevundimonas that synthesizes hydroxylated astaxanthin. , 2006, Gene.

[3]  G. Seibold,et al.  Carbohydrate metabolism in Corynebacterium glutamicum and applications for the metabolic engineering of l-lysine production strains , 2010, Applied Microbiology and Biotechnology.

[4]  Christian Matano,et al.  Engineering of Corynebacterium glutamicum for growth and l-lysine and lycopene production from N-acetyl-glucosamine , 2014, Applied Microbiology and Biotechnology.

[5]  W. Döll,et al.  Die Bakterienflora der medizinischen Blutegel , 2004, Archiv für Mikrobiologie.

[6]  Frances H. Arnold,et al.  A C35 Carotenoid Biosynthetic Pathway , 2003, Applied and Environmental Microbiology.

[7]  D. Bagchi,et al.  Synthetic astaxanthin is significantly inferior to algal-based astaxanthin as an antioxidant and may not be suitable as a human nutraceutical supplement , 2013 .

[8]  J. Gibrat,et al.  The Arthrobacter arilaitensis Re117 Genome Sequence Reveals Its Genetic Adaptation to the Surface of Cheese , 2010, PloS one.

[9]  C. Schmidt-Dannert,et al.  Metabolic engineering towards biotechnological production of carotenoids in microorganisms , 2002, Applied Microbiology and Biotechnology.

[10]  V. Wendisch,et al.  IdsA is the major geranylgeranyl pyrophosphate synthase involved in carotenogenesis in Corynebacterium glutamicum , 2014, The FEBS journal.

[11]  Tiangang Liu,et al.  In vitro reconstitution of mevalonate pathway and targeted engineering of farnesene overproduction in Escherichia coli , 2014, Biotechnology and bioengineering.

[12]  D. Asker,et al.  Sphingomonas astaxanthinifaciens sp. nov., a novel astaxanthin-producing bacterium of the family Sphingomonadaceae isolated from Misasa, Tottori, Japan. , 2007, FEMS microbiology letters.

[13]  A. Tauch,et al.  Tools for genetic engineering in the amino acid-producing bacterium Corynebacterium glutamicum. , 2003, Journal of biotechnology.

[14]  H. Sahm,et al.  Pyruvate carboxylase is a major bottleneck for glutamate and lysine production by Corynebacterium glutamicum. , 2001, Journal of molecular microbiology and biotechnology.

[15]  D. G. Gibson,et al.  Enzymatic assembly of DNA molecules up to several hundred kilobases , 2009, Nature Methods.

[16]  J. Poindexter BIOLOGICAL PROPERTIES AND CLASSIFICATION OF THE CAULOBACTER GROUP , 1964, Bacteriological reviews.

[17]  S. Noack,et al.  Construction of a Prophage-Free Variant of Corynebacterium glutamicum ATCC 13032 for Use as a Platform Strain for Basic Research and Industrial Biotechnology , 2013, Applied and Environmental Microbiology.

[18]  T. Beppu,et al.  LdrP, a cAMP receptor protein/FNR family transcriptional regulator, serves as a positive regulator for the light-inducible gene cluster in the megaplasmid of Thermus thermophilus. , 2014, Microbiology.

[19]  K. Ueda,et al.  Role and Function of LitR, an Adenosyl B12-Bound Light-Sensitive Regulator of Bacillus megaterium QM B1551, in Regulation of Carotenoid Production , 2015, Journal of bacteriology.

[20]  S. Udaka,et al.  Studies on the amino acid fermentation. Part 1. Production of L-glutamic acid by various microorganisms. , 2004, The Journal of general and applied microbiology.

[21]  Jian Li,et al.  An economic assessment of astaxanthin production by large scale cultivation of Haematococcus pluvialis. , 2011, Biotechnology advances.

[22]  V. Wendisch,et al.  Metabolic engineering for the microbial production of carotenoids and related products with a focus on the rare C50 carotenoids , 2014, Applied Microbiology and Biotechnology.

[23]  H. Ni,et al.  Optimization of acidic extraction of astaxanthin from Phaffia rhodozyma , 2006, Journal of Zhejiang University SCIENCE B.

[24]  Yun Liu,et al.  Four Different Methods Comparison for Extraction of Astaxanthin from Green Alga Haematococcus pluvialis , 2014, TheScientificWorldJournal.

[25]  V. Wendisch,et al.  Production and glucosylation of C50 and C40 carotenoids by metabolically engineered Corynebacterium glutamicum , 2013, Applied Microbiology and Biotechnology.

[26]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[27]  V. Zachleder,et al.  Best practices in heterotrophic high-cell-density microalgal processes: achievements, potential and possible limitations , 2011, Applied Microbiology and Biotechnology.

[28]  G. Sandmann,et al.  Multiple improvement of astaxanthin biosynthesis in Xanthophyllomyces dendrorhous by a combination of conventional mutagenesis and metabolic pathway engineering , 2012, Biotechnology Letters.

[29]  V. Wendisch,et al.  Amino acid production from rice straw and wheat bran hydrolysates by recombinant pentose-utilizing Corynebacterium glutamicum , 2011, Applied Microbiology and Biotechnology.

[30]  V. Wendisch,et al.  Metabolic engineering of Corynebacterium glutamicum for glycolate production. , 2014, Journal of biotechnology.

[31]  D. Asker,et al.  Astaxanthin dirhamnoside, a new astaxanthin derivative produced by a radio-tolerant bacterium, Sphingomonas astaxanthinifaciens , 2009, The Journal of Antibiotics.

[32]  G. Sandmann,et al.  Expression and functional analysis of a gene cluster involved in the synthesis of decaprenoxanthin reveals the mechanisms for C50 carotenoid formation. , 2001, European journal of biochemistry.

[33]  K. Lemuth,et al.  Engineering of a plasmid-free Escherichia coli strain for improved in vivo biosynthesis of astaxanthin , 2011, Microbial cell factories.

[34]  J. Kalinowski,et al.  Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. , 1994, Gene.

[35]  J. Peters,et al.  Dietary carotenoids and certain cancers, heart disease, and age-related macular degeneration: a review of recent research. , 2009, Nutrition reviews.

[36]  S. Kinoshita,et al.  TAXONOMICAL STUDIES ON GLUTAMIC ACID-PRODUCING BACTERIA , 1967 .

[37]  T. Maoka,et al.  A highly selective biosynthetic pathway to non-natural C50 carotenoids assembled from moderately selective enzymes , 2015, Nature Communications.

[38]  N. Okudan,et al.  Well-Known Antioxidants and Newcomers in Sport Nutrition: Coenzyme Q10, Quercetin, Resveratrol, Pterostilbene, Pycnogenol and Astaxanthin , 2014 .

[39]  John Buckingham,et al.  Biotechnological production of astaxanthin with Phaffia rhodozyma/Xanthophyllomyces dendrorhous , 2011, Applied Microbiology and Biotechnology.

[40]  B. Bjerkeng,et al.  Pigmentation, carotenoids, lipid peroxides and lipid composition of skin of red porgy (Pagrus pagrus) fed diets supplemented with different astaxanthin sources , 2007 .

[41]  N. Misawa,et al.  The carotenoid 7,8-dihydro-psi end group can be cyclized by the lycopene cyclases from the bacterium Erwinia uredovora and the higher plant Capsicum annuum. , 1996, European journal of biochemistry.

[42]  S. Hsu,et al.  Mass production of C50 carotenoids by Haloferax mediterranei in using extruded rice bran and starch under optimal conductivity of brined medium , 2015, Bioprocess and Biosystems Engineering.

[43]  Jiali Gu,et al.  Construction of a controllable β‐carotene biosynthetic pathway by decentralized assembly strategy in Saccharomyces cerevisiae , 2014, Biotechnology and bioengineering.

[44]  H. Salis,et al.  Efficient search, mapping, and optimization of multi‐protein genetic systems in diverse bacteria , 2014 .

[45]  P. Dugo,et al.  Characterisation of the C50 carotenoids produced by strains of the cheese-ripening bacterium Arthrobacter arilaitensis , 2016 .

[46]  Volker F Wendisch,et al.  Crude glycerol-based production of amino acids and putrescine by Corynebacterium glutamicum. , 2013, Bioresource technology.

[47]  Bastian Blombach,et al.  Current knowledge on isobutanol production with Escherichia coli, Bacillus subtilis and Corynebacterium glutamicum , 2011, Bioengineered bugs.

[48]  M. Tesar,et al.  Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundimonas and Caulobacter. , 1999, International journal of systematic bacteriology.

[49]  L. Eggeling,et al.  Characterization of a Corynebacterium glutamicum Lactate Utilization Operon Induced during Temperature-Triggered Glutamate Production , 2005, Applied and Environmental Microbiology.

[50]  V. Wendisch,et al.  Engineering microbial cell factories: Metabolic engineering of Corynebacterium glutamicum with a focus on non‐natural products , 2015, Biotechnology journal.

[51]  Pathway engineering strategies for production of beneficial carotenoids in microbial hosts , 2012, Biotechnology Letters.

[52]  V. Wendisch,et al.  Putrescine production by engineered Corynebacterium glutamicum , 2010, Applied Microbiology and Biotechnology.

[53]  J. Büchs,et al.  High cell density cultivation of recombinant yeasts and bacteria under non-pressurized and pressurized conditions in stirred tank bioreactors. , 2007, Journal of biotechnology.

[54]  沖中 忠一 On glutamic acid , 1927 .

[55]  P. Wright,et al.  Comparative analysis of β-carotene hydroxylase genes for astaxanthin biosynthesis. , 2012, Journal of natural products.

[56]  Phillip C Wright,et al.  Characterization of cyanobacterial β‐carotene ketolase and hydroxylase genes in Escherichia coli, and their application for astaxanthin biosynthesis , 2009, Biotechnology and bioengineering.

[57]  H Sahm,et al.  Cloning, sequence analysis, expression, and inactivation of the Corynebacterium glutamicum icd gene encoding isocitrate dehydrogenase and biochemical characterization of the enzyme , 1995, Journal of bacteriology.

[58]  K. Busing,et al.  [Bacterial flora of the medicinal leech]. , 1953, Archiv fur Mikrobiologie.

[59]  V. Wendisch,et al.  Carotenoid biosynthesis and overproduction in Corynebacterium glutamicum , 2012, BMC Microbiology.

[60]  V. Wendisch,et al.  Optimization of the IPP Precursor Supply for the Production of Lycopene, Decaprenoxanthin and Astaxanthin by Corynebacterium glutamicum , 2014, Front. Bioeng. Biotechnol..

[61]  V. Wendisch,et al.  Glucosamine as carbon source for amino acid-producing Corynebacterium glutamicum , 2012, Applied Microbiology and Biotechnology.

[62]  R T Lorenz,et al.  Commercial potential for Haematococcus microalgae as a natural source of astaxanthin. , 2000, Trends in biotechnology.

[63]  L. Eggeling,et al.  Handbook of Corynebacterium glutamicum , 2005 .

[64]  A. Kondo,et al.  Glutamate production from β-glucan using endoglucanase-secreting Corynebacterium glutamicum , 2011, Applied Microbiology and Biotechnology.

[65]  J. Coombes,et al.  Astaxanthin in Cardiovascular Health and Disease , 2012, Molecules.

[66]  D. Hanahan Studies on transformation of Escherichia coli with plasmids. , 1983, Journal of molecular biology.

[67]  K. Ohgami,et al.  Effects of astaxanthin on lipopolysaccharide-induced inflammation in vitro and in vivo. , 2003, Investigative ophthalmology & visual science.

[68]  F. Rosso,et al.  From crude glycerol to carotenoids by using a Rhodotorula glutinis mutant , 2013, World Journal of Microbiology and Biotechnology.

[69]  C. Aflalo,et al.  On the relative efficiency of two- vs. one-stage production of astaxanthin by the green alga Haematococcus pluvialis. , 2007, Biotechnology and bioengineering.

[70]  V. Wendisch,et al.  Production of the sesquiterpene (+)-valencene by metabolically engineered Corynebacterium glutamicum. , 2014, Journal of biotechnology.

[71]  N. Misawa,et al.  In Vitro Characterization of Astaxanthin Biosynthetic Enzymes* , 1997, The Journal of Biological Chemistry.

[72]  Xuebo Liu,et al.  Cis astaxanthin and especially 9-cis astaxanthin exhibits a higher antioxidant activity in vitro compared to the all-trans isomer. , 2007, Biochemical and biophysical research communications.

[73]  G. Sandmann,et al.  Cloning of two carotenoid ketolase genes from Nostoc punctiforme for the heterologous production of canthaxanthin and astaxanthin , 2004, Biotechnology Letters.

[74]  J. Barredo,et al.  Xanthophyllomyces dendrorhous for the industrial production of astaxanthin , 2010, Applied Microbiology and Biotechnology.

[75]  Hiroshi Watanabe,et al.  Antihypertensive and neuroprotective effects of astaxanthin in experimental animals. , 2005, Biological & pharmaceutical bulletin.

[76]  J. Kalinowski,et al.  Utilization of soluble starch by a recombinant Corynebacterium glutamicum strain: growth and lysine production. , 2006, Journal of biotechnology.

[77]  S. Giovannoni,et al.  Genome Sequence of Fulvimarina pelagi HTCC2506T, a Mn(II)-Oxidizing Alphaproteobacterium Possessing an Aerobic Anoxygenic Photosynthetic Gene Cluster and Xanthorhodopsin , 2010, Journal of bacteriology.

[78]  S. Udaka,et al.  STUDIES ON THE AMINO ACID FERMENTATION , 1957 .

[79]  Elizabeth J Johnson,et al.  Carotenoid actions and their relation to health and disease. , 2005, Molecular aspects of medicine.

[80]  N. Misawa,et al.  Elucidation of the Erwinia uredovora carotenoid biosynthetic pathway by functional analysis of gene products expressed in Escherichia coli , 1990, Journal of bacteriology.

[81]  S. Pejić,et al.  Effect of Astaxanthin Supplementation on Salivary IgA, Oxidative Stress, and Inflammation in Young Soccer Players , 2015, Evidence-based complementary and alternative medicine : eCAM.

[82]  N. Brown,et al.  The MerR family of transcriptional regulators. , 2003, FEMS microbiology reviews.

[83]  Charles Darwin,et al.  Experiments , 1800, The Medical and physical journal.

[84]  H. Ding,et al.  Redox Control of Human Mitochondrial Outer Membrane Protein MitoNEET [2Fe-2S] Clusters by Biological Thiols and Hydrogen Peroxide* , 2014, The Journal of Biological Chemistry.

[85]  S. Giovannoni,et al.  Fulvimarina pelagi gen. nov., sp. nov., a marine bacterium that forms a deep evolutionary lineage of descent in the order "Rhizobiales". , 2003, International journal of systematic and evolutionary microbiology.