An orthorhombic crystal form of cyclohexaicosaose, CA26.32.59 H(2)O: comparison with the triclinic form.

Cycloamylose containing 26 glucose residues (cyclohexaicosaose, CA26) crystallized from water and 30% (v/v) polyethyleneglycol 400 in the orthorhombic space group P2(1)2(1)2(1) in the highly hydrated form CA26.32.59 H(2)O. X-ray analysis of the crystals at 0.85 A resolution shows that the macrocycle of CA26 is folded into two short left-handed V-amylose helices in antiparallel arrangement and related by a twofold rotational pseudosymmetry as reported recently for the (CA26)(2).76.75 H(2)O triclinic crystal form [Gessler, K. et al. Proc. Natl. Acad. Sci. USA 1999, 96, 4246-4251]. In the orthorhombic crystal form, CA26 molecules are packed in motifs reminiscent of V-amylose in hydrated and anhydrous forms. The intramolecular interface between the V-helices in CA26 is dictated by formation of an extended network of interhelical C-H...O hydrogen bonds; a comparable molecular arrangement is also evident for the intermolecular packing, suggesting that it is a characteristic feature of V-amylose interaction. The hydrophobic channels of CA26 are filled with disordered water molecules arranged in chains and held in position by multiple C-H...O hydrogen bonds. In the orthorhombic and triclinic crystal forms, the structures of CA26 molecules are equivalent but the positions of the individual water molecules are different, suggesting that the patterns of water chains are perturbed even by small structural changes associated with differences in packing arrangements in the two crystal lattices rather than with differences in the CA26 geometry.

[1]  A. Brunger Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. , 1992 .

[2]  G. Sheldrick,et al.  Advances in direct methods for protein crystallography. , 1999, Current opinion in structural biology.

[3]  D. McRee Practical Protein Crystallography , 1993 .

[4]  G. P. Johnson,et al.  HF/6‐31G* energy surfaces for disaccharide analogs , 2001 .

[5]  Steven M. L. Smith,et al.  Potato D-enzyme Catalyzes the Cyclization of Amylose to Produce Cycloamylose, a Novel Cyclic Glucan (*) , 1996, The Journal of Biological Chemistry.

[6]  Suzanne Fortier,et al.  Direct methods for solving macromolecular structures , 1998 .

[7]  W. Saenger,et al.  Band-flip and kink as novel structural motifs in α-(1→4)-d-glucose oligosaccharides. Crystal structures of cyclodeca- and cyclotetradecaamylose , 1999 .

[8]  Z. Otwinowski,et al.  [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[9]  Thomas Steiner,et al.  Structures of the Common Cyclodextrins and Their Larger Analogues-Beyond the Doughnut. , 1998, Chemical reviews.

[10]  B. Deloche,et al.  On a controversy about interpretation of nuclear magnetic resonance observations in poly-(dimethylsiloxan) networks cross-linked in solution , 1990 .

[11]  W. Saenger,et al.  Crystal and molecular structure of the hexasaccharide complex (p-nitrophenyl .alpha.-maltohexaoside)2.cntdot.Ba(I3)2.cntdot.27H2O , 1990 .

[12]  J. Shimada,et al.  Conformation of Novel Cycloamylose: Topological Aspects and Simulations , 1996 .

[13]  Norman L. Allinger,et al.  Van der Waals effects between hydrogen and first‐row atoms in molecular mechanics (MM3/MM4) , 2000 .

[14]  Akira Harada,et al.  Synthesis of a tubular polymer from threaded cyclodextrins , 1993, Nature.

[15]  D. Cremer,et al.  General definition of ring puckering coordinates , 1975 .

[16]  A. Imberty,et al.  The double-helical nature of the crystalline part of A-starch. , 1988, Journal of molecular biology.

[17]  C. Betzel,et al.  An Amylose Antiparallel Double Helix at Atomic Resolution , 1987, Science.

[18]  Randy J. Read,et al.  Experiences with a new translation-function program , 1987 .

[19]  P. Zugenmaier,et al.  Detailed refinement of the crystal structure of Vh-amylose☆ , 1981 .