Dynamic Organization of Chromatin Domains Revealed by Super-Resolution Live-Cell Imaging.

[1]  H. Dietz,et al.  Uncovering the forces between nucleosomes using DNA origami , 2016, Science Advances.

[2]  K. Maeshima,et al.  Dynamic Nucleosome Movement Provides Structural Information of Topological Chromatin Domains in Living Human Cells , 2016, bioRxiv.

[3]  Uttam Surana,et al.  Budding yeast chromatin is dispersed in a crowded nucleoplasm in vivo , 2016, bioRxiv.

[4]  F. Uhlmann.  SMC complexes: from DNA to chromosomes , 2016, Nature Reviews Molecular Cell Biology.

[5]  Takaaki Hikima,et al.  Nucleosomal arrays self‐assemble into supramolecular globular structures lacking 30‐nm fibers , 2016, The EMBO journal.

[6]  Y. Saga,et al.  Rapid Protein Depletion in Human Cells by Auxin-Inducible Degron Tagging with Short Homology Donors. , 2016, Cell reports.

[7]  Masaki Sasai,et al.  Liquid-like behavior of chromatin. , 2016, Current opinion in genetics & development.

[8]  Leonid A. Mirny,et al.  Super-resolution imaging reveals distinct chromatin folding for different epigenetic states , 2015, Nature.

[9]  Neva C. Durand,et al.  Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes , 2015, Proceedings of the National Academy of Sciences.

[10]  J. Dekker,et al.  Structural and functional diversity of Topologically Associating Domains , 2015, FEBS letters.

[11]  W. Bickmore,et al.  Chromatin at the nuclear periphery and the regulation of genome functions , 2015, Histochemistry and Cell Biology.

[12]  Nir Friedman,et al.  Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C , 2015, Cell.

[13]  Hiroshi Ochiai,et al.  Simultaneous live imaging of the transcription and nuclear position of specific genes , 2015, Nucleic acids research.

[14]  M. Prentiss,et al.  Chromosomes Progress to Metaphase in Multiple Discrete Steps via Global Compaction/Expansion Cycles , 2015, Cell.

[15]  Carmay Lim,et al.  A simple biophysical model emulates budding yeast chromosome condensation , 2015, eLife.

[16]  Tamar Schlick,et al.  The chromatin fiber: multiscale problems and approaches. , 2015, Current opinion in structural biology.

[17]  M. Garcia-Parajo,et al.  Chromatin Fibers Are Formed by Heterogeneous Groups of Nucleosomes In Vivo , 2015, Cell.

[18]  Kozo Tanaka,et al.  Chromokinesin Kid and kinetochore kinesin CENP-E differentially support chromosome congression without end-on attachment to microtubules , 2015, Nature Communications.

[19]  Kazunari Kaizu,et al.  The physical size of transcription factors is key to transcriptional regulation in chromatin domains , 2015, Journal of physics. Condensed matter : an Institute of Physics journal.

[20]  Neva C. Durand,et al.  A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping , 2014, Cell.

[21]  H. Kimura,et al.  Quantifying histone and RNA polymerase II post-translational modification dynamics in mother and daughter cells. , 2014, Methods.

[22]  Takaaki Hikima,et al.  Chromatin structure revealed by X-ray scattering analysis and computational modeling. , 2014, Methods.

[23]  Boris Lenhard,et al.  A Cohesin-Independent Role for NIPBL at Promoters Provides Insights in CdLS , 2014, PLoS genetics.

[24]  Jesse R. Dixon,et al.  Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells , 2013, Proceedings of the National Academy of Sciences.

[25]  J. Lis,et al.  Control of transcriptional elongation. , 2013, Annual review of genetics.

[26]  G. Schroth,et al.  Cohesin-mediated interactions organize chromosomal domain architecture , 2013, The EMBO journal.

[27]  Job Dekker,et al.  Organization of the Mitotic Chromosome , 2013, Science.

[28]  Wendy A Bickmore,et al.  The spatial organization of the human genome. , 2013, Annual review of genomics and human genetics.

[29]  Takeharu Nagai,et al.  Flexible and dynamic nucleosome fiber in living mammalian cells , 2013, Nucleus.

[30]  Uma M. Muthurajan,et al.  The role of the nucleosome acidic patch in modulating higher order chromatin structure , 2013, Journal of The Royal Society Interface.

[31]  P. Cook,et al.  Transcription factories: genome organization and gene regulation. , 2013, Chemical reviews.

[32]  D. Spector,et al.  Chromatin organization and transcriptional regulation. , 2013, Current opinion in genetics & development.

[33]  T. Hirano,et al.  Condensin II initiates sister chromatid resolution during S phase , 2013, The Journal of cell biology.

[34]  H. Yokota,et al.  Local nucleosome dynamics facilitate chromatin accessibility in living mammalian cells. , 2012, Cell reports.

[35]  F. Uhlmann,et al.  Condensin, Chromatin Crossbarring and Chromosome Condensation , 2012, Current Biology.

[36]  Ugljesa Djuric,et al.  Open and closed domains in the mouse genome are configured as 10‐nm chromatin fibres , 2012, EMBO reports.

[37]  T. Hirano.  Condensins: universal organizers of chromosomes with diverse functions. , 2012, Genes & development.

[38]  J. Sedat,et al.  Spatial partitioning of the regulatory landscape of the X-inactivation centre , 2012, Nature.

[39]  Jesse R. Dixon,et al.  Topological Domains in Mammalian Genomes Identified by Analysis of Chromatin Interactions , 2012, Nature.

[40]  A. Tanay,et al.  Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome , 2012, Cell.

[41]  H. Leonhardt,et al.  Structure, function and dynamics of nuclear subcompartments. , 2012, Current opinion in cell biology.

[42]  William C Earnshaw,et al.  Building mitotic chromosomes , 2011, Current opinion in cell biology.

[43]  Christoph Cremer,et al.  Localization microscopy reveals expression-dependent parameters of chromatin nanostructure. , 2010, Biophysical journal.

[44]  S. Dalton,et al.  Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types. , 2010, Genome research.

[45]  T. Hirano,et al.  Sister chromatid resolution: a cohesin releasing network and beyond , 2010, Chromosoma.

[46]  C. Green,et al.  Analysis of replication factories in human cells by super-resolution light microscopy , 2009, BMC Cell Biology.

[47]  U. Birk,et al.  Measurement of replication structures at the nanometer scale using super-resolution light microscopy , 2009, Nucleic acids research.

[48]  Suliana Manley,et al.  Photoactivatable mCherry for high-resolution two-color fluorescence microscopy , 2009, Nature Methods.

[49]  Achilleas S Frangakis,et al.  Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ , 2008, Proceedings of the National Academy of Sciences.

[50]  K. Jaqaman,et al.  Robust single particle tracking in live cell time-lapse sequences , 2008, Nature Methods.

[51]  H. Aburatani,et al.  Cohesin mediates transcriptional insulation by CCCTC-binding factor , 2008, Nature.

[52]  J. Lippincott-Schwartz,et al.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy , 2008, Nature Methods.

[53]  M. Tokunaga,et al.  Highly inclined thin illumination enables clear single-molecule imaging in cells , 2008, Nature Methods.

[54]  Heinrich Leonhardt,et al.  An Unexpected Link Between Energy Metabolism, Calcium, Chromatin Condensation and Cell Cycle , 2007, Cell cycle.

[55]  Karl Rohr,et al.  Chromatin domains and the interchromatin compartment form structurally defined and functionally interacting nuclear networks , 2006, Chromosome Research.

[56]  T. Hashikawa,et al.  Cell-cycle-dependent dynamics of nuclear pores: pore-free islands and lamins , 2006, Journal of Cell Science.

[57]  Michael J Rust,et al.  Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM) , 2006, Nature Methods.

[58]  J. Lippincott-Schwartz,et al.  Imaging Intracellular Fluorescent Proteins at Nanometer Resolution , 2006, Science.

[59]  Tom Misteli,et al.  Chromatin in pluripotent embryonic stem cells and differentiation , 2006, Nature Reviews Molecular Cell Biology.

[60]  P. Lichter,et al.  Histone acetylation increases chromatin accessibility , 2005, Journal of Cell Science.

[61]  K. Nasmyth,et al.  The structure and function of SMC and kleisin complexes. , 2005, Annual review of biochemistry.

[62]  A. Belmont,et al.  Visualization of early chromosome condensation , 2004, The Journal of cell biology.

[63]  Hiroshi Kimura,et al.  The transcription cycle of RNA polymerase II in living cells , 2002, The Journal of cell biology.

[64]  Hiroshi Kimura,et al.  Kinetics of Core Histones in Living Human Cells , 2001, The Journal of cell biology.

[65]  Hiroshi Kimura,et al.  Direct Imaging of DNA in Living Cells Reveals the Dynamics of Chromosome Formation , 1999, The Journal of cell biology.

[66]  Ana Pombo,et al.  Replicon Clusters Are Stable Units of Chromosome Structure: Evidence That Nuclear Organization Contributes to the Efficient Activation and Propagation of S Phase in Human Cells , 1998, The Journal of cell biology.

[67]  T. Richmond,et al.  Crystal structure of the nucleosome core particle at 2.8 Å resolution , 1997, Nature.

[68]  D L Spector,et al.  Dynamic organization of DNA replication in mammalian cell nuclei: spatially and temporally defined replication of chromosome-specific alpha-satellite DNA sequences , 1992, The Journal of cell biology.

[69]  L. Schermelleh,et al.  Functional nuclear organization of transcription and DNA replication: a topographical marriage between chromatin domains and the interchromatin compartment. , 2010, Cold Spring Harbor symposia on quantitative biology.

[70]  J. Hansen,et al.  Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions. , 2002, Annual review of biophysics and biomolecular structure.