Industrial Manufacturing of Plasmid-DNA Products for Gene Vaccination and Therapy

Although today only a few DNA vaccine products have gained market approval for veterinary applications, still numerous human clinical trials are performed. Clinical progress in the field of DNA vaccination and gene therapy has led to an increased demand of pharmaceutical-grade plasmid DNA (pDNA), manufactured under the conditions of current Good Manufacturing Practices (cGMP). Consequently, significant progress in process science and manufacturing technology of plasmid DNA has been made during the past years. In upstream processing (vector design, host strain, fermentation process), significant achievements have been made, resulting in steadily increasing pDNA fermentation titers. In general, the downstream processing steps such as cell lysis and chromatographic purification still often represent engineering challenges in view of high product scales. This article summarizes the state of the art in industrial plasmid manufacturing and discusses bottlenecks and pitfalls to be avoided in order to obtain pDNA products of high and reproducible quantity and quality.

[1]  O. Tolmachov Designing plasmid vectors. , 2009, Methods in molecular biology.

[2]  R. Cristiano,et al.  Uptake characteristics of NGR-coupled stealth PEI/pDNA nanoparticles loaded with PLGA-PEG-PLGA tri-block copolymer for targeted delivery to human monocyte-derived dendritic cells. , 2006, International journal of pharmaceutics.

[3]  A. Rozkov,et al.  Fed batch culture with declining specific growth rate for high-yielding production of a plasmid containing a gene therapy sequence in Escherichia coli DH1 , 2006 .

[4]  B. Junker,et al.  Development of a Highly Productive and Scalable Plasmid DNA Production Platform , 2008, Biotechnology progress.

[5]  D. Sherratt,et al.  Escherichia coli strains that allow antibiotic-free plasmid selection and maintenance by repressor titration. , 2001, Nucleic acids research.

[6]  F. Blattner,et al.  Emergent Properties of Reduced-Genome Escherichia coli , 2006, Science.

[7]  R. Draghia‐Akli,et al.  Production of pharmaceutical-grade plasmids at high concentration and high supercoiled percentage. , 2010, Vaccine.

[8]  J. Engbersen,et al.  Shielding the cationic charge of nanoparticle-formulated dermal DNA vaccines is essential for antigen expression and immunogenicity. , 2010, Journal of controlled release : official journal of the Controlled Release Society.

[9]  P. Tan,et al.  Immunolipoplexes: an efficient, nonviral alternative for transfection of human dendritic cells with potential for clinical vaccination. , 2005, Molecular therapy : the journal of the American Society of Gene Therapy.

[10]  L. Good,et al.  Plasmid selection in Escherichia coli using an endogenous essential gene marker , 2008, BMC biotechnology.

[11]  F. Soubrier,et al.  Improvement of pCOR plasmid copy number for pharmaceutical applications , 2005, Applied Microbiology and Biotechnology.

[12]  E. Wagner Strategies to Improve DNA Polyplexes for in Vivo Gene Transfer: Will “Artificial Viruses” Be the Answer? , 2004, Pharmaceutical Research.

[13]  James A. Williams,et al.  Improved antibiotic-free DNA vaccine vectors utilizing a novel RNA based plasmid selection system. , 2009, Vaccine.

[14]  M. Lenter,et al.  Nonviral monocyte chemoattractant protein-1 gene transfer improves arteriogenesis after femoral artery occlusion , 2004, Gene Therapy.

[15]  M. Ogris,et al.  Tumor-Targeted Gene Transfer with DNA Polyplexes , 2002, Somatic cell and molecular genetics.

[16]  J. Benoit,et al.  Progress in developing cationic vectors for non-viral systemic gene therapy against cancer. , 2008, Biomaterials.

[17]  Abhay Pandit,et al.  Non-viral polyplexes: Scaffold mediated delivery for gene therapy , 2010 .

[18]  C. Culmsee,et al.  Targeting of polyplexes: toward synthetic virus vector systems. , 2005, Advances in genetics.

[19]  Y. Perrie,et al.  Lipoplexes formulation and optimisation: in vitro transfection studies reveal no correlation with in vivo vaccination studies. , 2010, Current drug delivery.

[20]  Michel Sadelain,et al.  Production of clinical-grade plasmid DNA for human Phase I clinical trials and large animal clinical studies. , 2007, Vaccine.

[21]  A. Rozkov,et al.  Large‐scale production of endotoxin‐free plasmids for transient expression in mammalian cell culture , 2008, Biotechnology and bioengineering.

[22]  G. Striedner,et al.  Marker-free plasmids for gene therapeutic applications--lack of antibiotic resistance gene substantially improves the manufacturing process. , 2010, Journal of biotechnology.

[23]  K. Scheibe,et al.  Laminitis in Przewalski horses kept in a semireserve. , 2001, Journal of veterinary science.

[24]  W. Buchinger,et al.  Industrial Scale cGMP Purification of Pharmaceutical Grade Plasmid‐DNA , 2005 .

[25]  Peter Mayrhofer,et al.  Use of minicircle plasmids for gene therapy. , 2009, Methods in molecular biology.

[26]  J. Griffith,et al.  Separation of topological forms of plasmid DNA by anion-exchange HPLC: shifts in elution order of linear DNA. , 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[27]  Sang Jun Lee,et al.  Modified Escherichia coli B (BL21), a superior producer of plasmid DNA compared with Escherichia coli K (DH5alpha). , 2008, Biotechnology and bioengineering.

[28]  Jochen Urthaler,et al.  Improved downstream process for the production of plasmid DNA for gene therapy. , 2005, Acta biochimica Polonica.

[29]  R. Necina,et al.  Automated alkaline lysis for industrial scale cGMP production of pharmaceutical grade plasmid-DNA. , 2007, Journal of biotechnology.

[30]  D. Mahvi,et al.  DNA cancer vaccines: A gene gun approach , 1997, Immunology and cell biology.

[31]  M. Schleef,et al.  Animal‐free production of ccc‐supercoiled plasmids for research and clinical applications , 2004, The journal of gene medicine.

[32]  Margaret A. Liu Gene-based vaccines: Recent developments. , 2010, Current opinion in molecular therapeutics.

[33]  Y. Katayama,et al.  The features and shortcomings for gene delivery of current non-viral carriers. , 2006, Current medicinal chemistry.

[34]  E. Keshavarz‐Moore,et al.  Host strain influences on supercoiled plasmid DNA production in Escherichia coli: Implications for efficient design of large‐scale processes , 2008, Biotechnology and bioengineering.

[35]  M. Schleef,et al.  Production of plasmid DNA as a pharmaceutical. , 2009, Methods in molecular biology.

[36]  A. Podgornik,et al.  Preparation of pharmaceutical-grade plasmid DNA using methacrylate monolithic columns. , 2010, Vaccine.

[37]  Clarence M. Ongkudon,et al.  Mitigating the looming vaccine crisis: production and delivery of plasmid-based vaccines , 2011, Critical reviews in biotechnology.

[38]  R. Draghia‐Akli,et al.  DNA vaccination and gene therapy: optimization and delivery for cancer therapy , 2008, Expert review of vaccines.

[39]  S. Hyde,et al.  Progress and Prospects: The design and production of plasmid vectors , 2009, Gene Therapy.

[40]  Ales Podgornik,et al.  Application of monoliths for plasmid DNA purification development and transfer to production. , 2005, Journal of chromatography. A.

[41]  R. Grabherr,et al.  A novel antibiotic free plasmid selection system: Advances in safe and efficient DNA therapy , 2008, Biotechnology journal.

[42]  Ying Cai,et al.  DNA vaccine manufacture: scale and quality , 2009, Expert review of vaccines.

[43]  U. Jb An update on the state of the art of DNA vaccines. , 2001 .

[44]  M. S. Levy,et al.  Bioprocess Engineering Issues That Would Be Faced in Producing a DNA Vaccine at up to 100 m3 Fermentation Scale for an Influenza Pandemic , 2008, Biotechnology progress.

[45]  M. Eiteman,et al.  DNA plasmid production in different host strains of Escherichia coli , 2009, Journal of Industrial Microbiology & Biotechnology.

[46]  P. Perrin,et al.  Production, purification and analysis of an experimental DNA vaccine against rabies , 2001, The journal of gene medicine.

[47]  Ernst Wagner,et al.  Gene delivery using polymer therapeutics , 2006 .

[48]  F. Artzner,et al.  THERMOTROPIC PHASE BEHAVIOR OF CATIONIC LIPID: DNA COMPLEXES COMPARED TO BINARY LIPID MIXTURES , 1999 .

[49]  R. Peschka-Süss,et al.  Transfection Efficiency and Cytotoxicity of Nonviral Gene Transfer Reagents in Human Smooth Muscle and Endothelial Cells , 2004, Pharmaceutical Research.

[50]  K. Prather,et al.  Engineering of bacterial strains and vectors for the production of plasmid DNA , 2009, Applied Microbiology and Biotechnology.

[51]  R. Tyagi,et al.  Various carrier system(s)- mediated genetic vaccination strategies against malaria - Retracted , 2008, Expert review of vaccines.

[52]  R. Macdonald,et al.  Cationic phospholipids forming cubic phases: lipoplex structure and transfection efficiency. , 2008, Molecular pharmaceutics.

[53]  D. Scherman,et al.  Efficient purification of plasmid DNA for gene transfer using triple-helix affinity chromatography , 1997, Gene Therapy.

[54]  James A. Williams,et al.  Plasmid DNA vaccine vector design: impact on efficacy, safety and upstream production. , 2009, Biotechnology advances.

[55]  Ernst Wagner,et al.  Targeting tumors with non-viral gene delivery systems. , 2002, Drug discovery today.

[56]  B. Pitard,et al.  Physicochemical parameters of non-viral vectors that govern transfection efficiency. , 2008, Current gene therapy.

[57]  C. Voss Production of plasmid DNA for pharmaceutical use. , 2007, Biotechnology annual review.

[58]  H. Birnboim,et al.  A rapid alkaline extraction procedure for screening recombinant plasmid DNA. , 1979, Nucleic acids research.

[59]  Leaf Huang,et al.  Gene therapy progress and prospects: non-viral gene therapy by systemic delivery , 2006, Gene Therapy.

[60]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[61]  Raf Lemmens,et al.  Plasmid DNA purification , 2004 .

[62]  James A. Williams,et al.  Generic plasmid DNA production platform incorporating low metabolic burden seed‐stock and fed‐batch fermentation processes , 2009, Biotechnology and bioengineering.

[63]  J. Beijnen,et al.  DNA tattoo vaccination: effect on plasmid purity and transfection efficiency of different topoisoforms. , 2009, Journal of controlled release : official journal of the Controlled Release Society.

[64]  P. Ayazi Shamlou,et al.  Effect of shear on plasmid DNA in solution , 1999 .

[65]  R. Macdonald,et al.  Modulation of a membrane lipid lamellar-nonlamellar phase transition by cationic lipids: a measure for transfection efficiency. , 2008, Biochimica et biophysica acta.

[66]  Yu-hong Li,et al.  Good Manufacturing Practices production and analysis of a DNA vaccine against dental caries , 2009, Acta Pharmacologica Sinica.

[67]  M. Lenter,et al.  In Vivo Human MCP-1 Transfection in Porcine Arteries by Intravascular Electroporation , 2005, Pharmaceutical Research.

[68]  M. Ogris,et al.  Stabilized Nonviral Formulations for the Delivery of MCP-1 Gene into Cells of the Vasculoendothelial System , 2004, Pharmaceutical Research.

[69]  Gerald Striedner,et al.  Development of an antibiotic-free plasmid selection system based on glycine auxotrophy for recombinant protein overproduction in Escherichia coli. , 2008, Journal of biotechnology.

[70]  M. Schleef,et al.  Minicircle‐DNA production by site specific recombination and protein–DNA interaction chromatography , 2008, The journal of gene medicine.

[71]  James A. Williams,et al.  Plasmid DNA manufacturing technology. , 2007, Recent patents on biotechnology.

[72]  R. Peschka-Süss,et al.  Large-scale production of lipoplexes with long shelf-life. , 2005, European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft fur Pharmazeutische Verfahrenstechnik e.V.

[73]  J. Cabral,et al.  Development of Process Flow Sheets for the Purification of Supercoiled Plasmids for Gene Therapy Applications , 1999 .

[74]  V. Dufour DNA vaccines: new applications for veterinary medicine , 2001 .

[75]  James A. Williams,et al.  Inducible Escherichia coli fermentation for increased plasmid DNA production , 2006, Biotechnology and applied biochemistry.

[76]  Kristala Jones Prather,et al.  Industrial scale production of plasmid DNA for vaccine and gene therapy: plasmid design, production, and purification , 2003 .

[77]  D. Schaffert,et al.  Gene therapy progress and prospects: synthetic polymer-based systems , 2008, Gene Therapy.

[78]  D. Scherman,et al.  pCOR: a new design of plasmid vectors for nonviral gene therapy , 1999, Gene Therapy.

[79]  S. Martins,et al.  Purification of a cystic fibrosis plasmid vector for gene therapy using hydrophobic interaction chromatography , 2000, Biotechnology and bioengineering.

[80]  A. Tejeda-Mansir,et al.  Upstream processing of plasmid DNA for vaccine and gene therapy applications. , 2008, Recent patents on biotechnology.

[81]  M. H. Santana,et al.  The synergy between structural stability and DNA-binding controls the antibody production in EPC/DOTAP/DOPE liposomes and DOTAP/DOPE lipoplexes. , 2009, Colloids and surfaces. B, Biointerfaces.