Translation of vph mRNA in Streptomyces lividans and Escherichia coli after removal of the 5′ untranslated leader

The Streptomyces vinaceus viomycin phosphotransferase (vph) mRNA contains an untranslated leader with a conventional Shine–Dalgarno homology. The vph leader was removed by ligation of the vph coding sequence to the transcriptional start site of a Strepto‐myces or an Escherichia coli promoter, such that transcription would initiate at the first position of the vph start codon. Analysis of mRNA demonstrated that transcription initiated primarily at the A of the vph AUG translational start codon in both Streptomyces lividans and E. coli; cells expressing the unleadered vph mRNA were resistant to viomycin indicating that the Shine–Dalgarno sequence, or other features contained within the leader, was not necessary for vph translation. Addition of four nucleotides (5′‐AUGC‐3′) onto the 5′ end of the unleadered vph mRNA resulted in translation initiation from the vph start codon and the AUG triplet contained within the added sequence. Translational fusions of vph sequence to a Tn5 neo reporter gene indicated that the first 16 codons of vph coding sequence were sufficient to specify the translational start site and reading frame for expression of neomycin resistance in both E. coli and S. lividans.

[1]  J W Watts,et al.  The 5'-leader sequence of tobacco mosaic virus RNA enhances the expression of foreign gene transcripts in vitro and in vivo. , 1987, Nucleic acids research.

[2]  J. Nickoloff,et al.  Site-directed mutagenesis of virtually any plasmid by eliminating a unique site. , 1992, Analytical biochemistry.

[3]  Mark J. Buttner,et al.  At least three different RNA polymerase holoenzymes direct transcription of the agarase gene (dagA) of streptomyces coelicolor A3(2) , 1988, Cell.

[4]  J. Steitz,et al.  How ribosomes select initiator regions in mRNA: base pair formation between the 3' terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli. , 1975, Proceedings of the National Academy of Sciences of the United States of America.

[5]  M. Bibb,et al.  Cloning and expression in streptomyces lividans of antibiotic resistance genes derived from Escherichia coli , 1981, Journal of bacteriology.

[6]  S. Arnott,et al.  The ribosome binding sites recognized by E. coli ribosomes have regions with signal character in both the leader and protein coding segments. , 1980, Nucleic acids research.

[7]  M. Nishiyama,et al.  Nucleotide sequence of the streptothricin acetyltransferase gene from Streptomyces lavendulae and its expression in heterologous hosts , 1987, Journal of bacteriology.

[8]  M. Santer,et al.  A single base change in the Shine-Dalgarno region of 16S rRNA of Escherichia coli affects translation of many proteins. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[9]  H. Chen,et al.  The influence of adenine-rich motifs in the 3' portion of the ribosome binding site on human IFN-gamma gene expression in Escherichia coli. , 1994, Journal of molecular biology.

[10]  W. Reznikoff,et al.  Downstream deletion analysis of the lac promoter , 1991, Journal of bacteriology.

[11]  D. Hopwood,et al.  Cloning and expression of Mycobacterium bovis BCG DNA in "Streptomyces lividans" , 1986, Journal of bacteriology.

[12]  P. Heinzel,et al.  Isolation and nucleotide sequencing of an aminocyclitol acetyltransferase gene from Streptomyces rimosus forma paromomycinus , 1989, Journal of bacteriology.

[13]  P. Hu,et al.  A novel translation initiation region from Mycoplasma genitalium that functions in Escherichia coli. , 1991, Nucleic acids research.

[14]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[15]  S. Lacks,et al.  Characterization of the polA gene of Streptococcus pneumoniae and comparison of the DNA polymerase I it encodes to homologous enzymes from Escherichia coli and phage T7. , 1989, The Journal of biological chemistry.

[16]  M Ptashne,et al.  Autoregulation and function of a repressor in bacteriophage lambda. , 1976, Science.

[17]  T. Linn,et al.  Improved vector system for constructing transcriptional fusions that ensures independent translation of lacZ , 1990, Journal of bacteriology.

[18]  V. Maximova,et al.  Efficiency of the 5'-terminal sequence (omega) of tobacco mosaic virus RNA for the initiation of eukaryotic gene translation in Escherichia coli. , 1992, European journal of biochemistry.

[19]  J. van Duin,et al.  Scanning model for translational reinitiation in eubacteria. , 1990, Journal of molecular biology.

[20]  M. Bibb,et al.  Unusual transcriptional and translational features of the aminoglycoside phosphotransferase gene (aph) from Streptomyces fradiae. , 1989, Genes & development.

[21]  M. Nishiyama,et al.  Nucleotide sequence and transcriptional analysis of the Streptomyces griseus gene (afsA) responsible for A-factor biosynthesis , 1989, Journal of bacteriology.

[22]  D. Dosch,et al.  Nucleotide sequence and transcriptional analysis of the nosiheptide-resistance gene from Streptomyces actuosus. , 1990, Gene.

[23]  T. Yura,et al.  Interplay of two cis-acting mRNA regions in translational control of sigma 32 synthesis during the heat shock response of Escherichia coli. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[24]  W. Hillen,et al.  Expression, purification and operator binding of the transposon Tn1721-encoded Tet repressor. , 1986, Journal of molecular biology.

[25]  S. Rangwala,et al.  A novel sequence element derived from bacteriophage T7 mRNA acts as an enhancer of translation of the lacZ gene in Escherichia coli. , 1989, The Journal of biological chemistry.

[26]  M. Okanishi,et al.  Formation and reversion of Streptomycete protoplasts: cultural condition and morphological study. , 1974, Journal of general microbiology.

[27]  J. Shine,et al.  The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. , 1974, Proceedings of the National Academy of Sciences of the United States of America.

[28]  G. Christie,et al.  Bacteriophage P2 late promoters. II. Comparison of the four late promoter sequences. , 1985, Journal of molecular biology.

[29]  M. L. Sprengart,et al.  The initiation of translation in E. coli: apparent base pairing between the 16srRNA and downstream sequences of the mRNA. , 1990, Nucleic acids research.

[30]  L. Brakier-Gingras,et al.  The anti-Shine-Dalgarno region in Escherichia coli 16S ribosomal RNA is not essential for the correct selection of translational starts. , 1990, Biochemistry.

[31]  J. Davies,et al.  Transcriptional mapping of the promoter of the aminoglycoside acetyltransferase gene (aacC9) of neomycin-producing Micromonospora chalcea. , 1992, Research in microbiology.

[32]  M. Bibb,et al.  Cloning and analysis of the promoter region of the erythromycin resistance gene (ermE) of Streptomyces erythraeus. , 1985, Gene.

[33]  S. Lacks,et al.  An extended -10 promoter alone directs transcription of the DpnII operon of Streptococcus pneumoniae. , 1995, Journal of molecular biology.

[34]  William R. McClure,et al.  Dual promoter control of the escherichia coli lactose operon , 1984, Cell.

[35]  M. Bibb,et al.  Plasmids, recombination and chromosome mapping in Streptomyces lividans 66. , 1983, Journal of general microbiology.

[36]  C. Thompson,et al.  Cloning of antibiotic resistance and nutritional genes in streptomycetes , 1982, Journal of bacteriology.

[37]  C. S. Devine,et al.  The T7 phage gene 10 leader RNA, a ribosome-binding site that dramatically enhances the expression of foreign genes in Escherichia coli. , 1988, Gene.

[38]  L. Isaksson,et al.  Codon choice and potential complementarity between mRNA downstream of the initiation codon and bases 1471-1480 in 16S ribosomal RNA affects expression of glnS. , 1991, Nucleic acids research.

[39]  Multiple control of Escherichia coli lysyl-tRNA synthetase expression involves a transcriptional repressor and a translational enhancer element. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[40]  D. Hopwood Genetic manipulation of Streptomyces : a laboratory manual , 1985 .

[41]  C. Gualerzi,et al.  Selection of the mRNA translation initiation region by Escherichia coli ribosomes. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[42]  J. Montoya,et al.  Distinctive features of the 5′-terminal sequences of the human mitochondrial mRNAs , 1981, Nature.

[43]  K. Kendrick,et al.  Regulated expression of the histidase structural gene in Streptomyces griseus , 1995, Journal of bacteriology.

[44]  A. Bogdanov,et al.  Unusual ribosome binding properties of mRNA encoding bacteriophage λ repressor , 1992 .

[45]  J. Jaskula,et al.  In vivo translational start site selection on leaderless mRNA transcribed from the Streptomyces fradiae aph gene , 1992, Journal of bacteriology.

[46]  H. Boyer,et al.  Characterization of a halobacterial gene affecting bacterio-opsin gene expression. , 1984, Nucleic acids research.

[47]  R. Treisman,et al.  Transcription maps of polyoma virus-specific RNA: analysis by two-dimensional nuclease S1 gel mapping. , 1980, Methods in enzymology.

[48]  M. Bibb,et al.  Derivatives of pUC18 that have BglII sites flanking a modified multiple cloning site and that retain the ability to identify recombinant clones by visual screening of Escherichia coli colonies. , 1993, Gene.

[49]  T. Kunkel Rapid and efficient site-specific mutagenesis without phenotypic selection. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[50]  D. Oesterhelt,et al.  The halo‐opsin gene. II. Sequence, primary structure of halorhodopsin and comparison with bacteriorhodopsin , 1987, The EMBO journal.

[51]  H. D. de Boer,et al.  Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[52]  S. Horinouchi,et al.  A putative two-component regulatory system involved in secondary metabolism in Streptomyces spp , 1992, Journal of bacteriology.

[53]  S. Henikoff Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. , 1984, Gene.

[54]  W. V. Shaw,et al.  Nucleotide sequence of the chloramphenicol acetyltransferase gene of Streptomyces acrimycini. , 1989, Gene.