development Two waves of de novo methylation during mouse germ cell Material

Material Supplemental http://genesdev.cshlp.org/content/suppl/2014/07/16/28.14.1544.DC1.html References http://genesdev.cshlp.org/content/28/14/1544.full.html#ref-list-1 This article cites 36 articles, 10 of which can be accessed free at: License Commons Creative . http://creativecommons.org/licenses/by-nc/4.0/ at Creative Commons License (Attribution-NonCommercial 4.0 International), as described ). After six months, it is available under a http://genesdev.cshlp.org/site/misc/terms.xhtml six months after the full-issue publication date (see This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first

[1]  Xiwei Wu,et al.  De novo DNA methylation in the male germ line occurs by default but is excluded at sites of H3K4 methylation. , 2013, Cell reports.

[2]  DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus , 2013, Genome Biology.

[3]  T. Down,et al.  Germline DNA Demethylation Dynamics and Imprint Erasure Through 5-Hydroxymethylcytosine , 2013, Science.

[4]  Crystal M. Hepp,et al.  Revisiting the evolution of mouse LINE-1 in the genomic era , 2013, Mobile DNA.

[5]  W. Reik,et al.  The Dynamics of Genome-wide DNA Methylation Reprogramming in Mouse Primordial Germ Cells , 2012, Molecular cell.

[6]  R. Martienssen,et al.  Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA , 2012, Cell.

[7]  Michael Weber,et al.  Global profiling of DNA methylation erasure in mouse primordial germ cells. , 2012, Genome research.

[8]  C. Feschotte,et al.  Endogenous viruses: insights into viral evolution and impact on host biology , 2012, Nature Reviews Genetics.

[9]  Yutaka Suzuki,et al.  Contribution of Intragenic DNA Methylation in Mouse Gametic DNA Methylomes to Establish Oocyte-Specific Heritable Marks , 2012, PLoS genetics.

[10]  Anton J. Enright,et al.  The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements , 2011, Nature.

[11]  F. Lienert,et al.  Identification of genetic elements that autonomously determine DNA methylation states , 2011, Nature Genetics.

[12]  S. Rafii,et al.  Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment. , 2011, Molecular cell.

[13]  W. Richard McCombie,et al.  Sperm Methylation Profiles Reveal Features of Epigenetic Inheritance and Evolution in Primates , 2011, Cell.

[14]  J. V. Moran,et al.  Dynamic interactions between transposable elements and their hosts , 2011, Nature Reviews Genetics.

[15]  Michael Q. Zhang,et al.  Updates to the RMAP short-read mapping software , 2009, Bioinform..

[16]  Jörg D. Becker,et al.  Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen , 2009, Cell.

[17]  H. Kazazian,et al.  Retrotransposons Revisited: The Restraint and Rehabilitation of Parasites , 2008, Cell.

[18]  Ravi Sachidanandam,et al.  A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. , 2008, Molecular cell.

[19]  A. Aravin,et al.  Small RNA guides for de novo DNA methylation in mammalian germ cells. , 2008, Genes & development.

[20]  Kenichiro Hata,et al.  DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes. , 2008, Genes & development.

[21]  C. Lengner,et al.  Oct4 expression is not required for mouse somatic stem cell self-renewal. , 2007, Cell stem cell.

[22]  Y. Kohara,et al.  Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse. , 2007, Human molecular genetics.

[23]  Ravi Sachidanandam,et al.  Developmentally Regulated piRNA Clusters Implicate MILI in Transposon Control , 2007, Science.

[24]  G. Hannon,et al.  MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline. , 2007, Developmental cell.

[25]  M. Surani,et al.  Genetic and Epigenetic Regulators of Pluripotency , 2007, Cell.

[26]  L. Riou,et al.  Flow cytometric characterization of viable meiotic and postmeiotic cells by Hoechst 33342 in mouse spermatogenesis , 2005, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

[27]  T. Bestor,et al.  Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L , 2004, Nature.

[28]  Yoichi Matsuda,et al.  Mili, a mammalian member of piwi family gene, is essential for spermatogenesis , 2004, Development.

[29]  D. Lees-Murdock,et al.  Methylation dynamics of repetitive DNA elements in the mouse germ cell lineage. , 2003, Genomics.

[30]  W. Reik,et al.  Resistance of IAPs to methylation reprogramming may provide a mechanism for epigenetic inheritance in the mouse , 2003, Genesis.

[31]  M. Surani,et al.  Epigenetic reprogramming in mouse primordial germ cells , 2002, Mechanisms of Development.

[32]  Y. Matsuda,et al.  Two mouse piwi-related genes: miwi and mili , 2001, Mechanisms of Development.

[33]  W. Reik,et al.  Epigenetic Reprogramming in Mammalian Development , 2001, Science.

[34]  C. Walsh,et al.  Transcription of IAP endogenous retroviruses is constrained by cytosine methylation , 1998, Nature Genetics.

[35]  A. Mclaren,et al.  Primordial germ cells in the mouse embryo during gastrulation. , 1990, Development.

[36]  S. Lehnert,et al.  Temporal and regional changes in DNA methylation in the embryonic, extraembryonic and germ cell lineages during mouse embryo development. , 1987, Development.

[37]  C. Wylie Primordial germ cells , 1980, Nature.