Parallelized Simulation of Molecular Dynamics with a Special-Purpose Computer: MDGRAPE-2

1 High Performance Biocomputing Research Team, Bioinformatics Group, Genomic Sciences Center, RIKEN, 61-1 Onocho, Tsurumi, Yokohama, Kanagawa 230-0046, Japan 2 Computational Science Division, Advanced Computing Center, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan 3 Saitama Institute of Technology, 1690 Husaiji, Okabemachi, Osatogun, Saitama 3690293, Japan 4 Department of Mechanical Engineering, Keio University, 3-14-1 Hiyoshi, Kouhoku, Yokohama, Kanagawa 223-8522, Japan 5 Bioinformatics Group, Genomic Sciences Center, RIKEN, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan