Preparing Unbiased T-Cell Receptor and Antibody cDNA Libraries for the Deep Next Generation Sequencing Profiling
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Olga V. Britanova | Dmitriy M. Chudakov | Ekaterina V. Putintseva | Maria A. Turchaninova | Dmitriy A. Bolotin | Ivan V. Zvyagin | Ilgar Z. Mamedov | O. Britanova | D. Chudakov | E. Putintseva | I. Mamedov | Y. Lebedev | M. A. Turchaninova | I. Zvyagin | D. A. Bolotin | Yuriy B. Lebedev
[1] R. Holt,et al. Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing. , 2009, Genome research.
[2] Daniel C. Douek,et al. A Novel Approach to the Analysis of Specificity, Clonality, and Frequency of HIV-Specific T Cell Responses Reveals a Potential Mechanism for Control of Viral Escape1 , 2002, The Journal of Immunology.
[3] S. Linnarsson,et al. Counting absolute numbers of molecules using unique molecular identifiers , 2011, Nature Methods.
[4] V. Tarabykin,et al. [Highly-effective subtractive hybridization of cDNA]. , 1994, Bioorganicheskaia khimiia.
[5] Abigail Wacher,et al. Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells. , 2009, Blood.
[6] Mikhail Shugay,et al. MiTCR: software for T-cell receptor sequencing data analysis , 2013, Nature Methods.
[7] F. Baas,et al. Deep Sequencing of Antiviral T-Cell Responses to HCMV and EBV in Humans Reveals a Stable Repertoire That Is Maintained for Many Years , 2012, PLoS pathogens.
[8] S. Nasim,et al. Nested polymerase chain reaction assay for the detection of cytomegalovirus overcomes false positives caused by contamination with fragmented DNA , 1990, Journal of medical virology.
[9] Ton N Schumacher,et al. Parallel detection of antigen-specific T cell responses by combinatorial encoding of MHC multimers , 2012, Nature Protocols.
[10] C. Vaquero,et al. Transcriptional and post‐transcriptional regulation of TcR, CD4 and CD8 gene expression during activation of normal human T lymphocytes. , 1990, The EMBO journal.
[11] Sergey Lukyanov,et al. Next generation sequencing for TCR repertoire profiling: Platform‐specific features and correction algorithms , 2012, European journal of immunology.
[12] O. Britanova,et al. First autologous hematopoietic SCT for ankylosing spondylitis: a case report and clues to understanding the therapy , 2012, Bone Marrow Transplantation.
[13] D. Price,et al. Wrestling with the repertoire: The promise and perils of next generation sequencing for antigen receptors , 2012, European journal of immunology.
[14] C. Carlson,et al. Overlap and Effective Size of the Human CD8+ T Cell Receptor Repertoire , 2010, Science Translational Medicine.
[15] O. Britanova,et al. Amplification of cDNA ends based on template-switching effect and step-out PCR. , 1999, Nucleic acids research.
[16] Dmitriy A Bolotin,et al. Quantitative tracking of T cell clones after haematopoietic stem cell transplantation , 2011, EMBO molecular medicine.
[17] Richard A. Moore,et al. Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes. , 2011, Genome research.
[18] N. Siafakas,et al. Multiplex polymerase chain reaction: A practical approach , 2002, Journal of clinical laboratory analysis.
[19] John Shawe-Taylor,et al. Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine , 2013, Bioinform..
[20] T. Schumacher,et al. High-throughput identification of antigen-specific TCRs by TCR gene capture , 2013, Nature Medicine.
[21] O. Britanova,et al. Single high-dose treatment with glucosaminyl-muramyl dipeptide is ineffective in treating ankylosing spondylitis , 2011, Rheumatology International.
[22] L. Farinelli,et al. By-passing in vitro screening—next generation sequencing technologies applied to antibody display and in silico candidate selection , 2010, Nucleic acids research.
[23] R. Wallace. Is this a practical approach? , 2001, Journal of the American College of Surgeons.
[24] Cheng Cheng,et al. Identification of errors introduced during high throughput sequencing of the T cell receptor repertoire , 2011, BMC Genomics.
[25] Mikhail Shugay,et al. Pairing of T‐cell receptor chains via emulsion PCR , 2013, European journal of immunology.
[26] P E Klapper,et al. Multiplex PCR: Optimization and Application in Diagnostic Virology , 2000, Clinical Microbiology Reviews.
[27] O. Britanova,et al. Individual characterization of stably expanded T cell clones in ankylosing spondylitis patients , 2009, Autoimmunity.
[28] Baback Gharizadeh,et al. High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets , 2010, Proceedings of the National Academy of Sciences.
[29] G. Dranoff,et al. Ex vivo characterization and isolation of rare memory B cells with antigen tetramers. , 2011, Blood.
[30] Seung Hyun Kang,et al. Monoclonal antibodies isolated without screening by analyzing the variable-gene repertoire of plasma cells , 2010, Nature Biotechnology.