A Vector-based Filtering Algorithm for Microarray Image

This paper presents a simple but effective method capable of processing microarray images. By applying nine directional templates to both of the two components of microarray images, the method is able to remove noise impairments while preserving low-contrast signals. This is based on the knowledge that signal spots should have the same edge features in both two components of microarray images, which can be detected by the directional templates, while noise and uneven background do not have this characteristic. The mathematical morphological filtering is then adopted by using a smaller structural element to remove dispersed noise points. The experimental result indicates that the proposed approach yields good performance in removing noise and enhancing spot location.

[1]  Frank Y. Shih,et al.  Recursive soft morphological filters , 1995, IEEE Trans. Image Process..

[2]  A. Venetsanopoulos,et al.  A multichannel order-statistic technique for cDNA microarray image processing , 2004, IEEE Transactions on NanoBioscience.

[3]  Fabrizio Russo,et al.  Color edge detection in presence of Gaussian noise using nonlinear prefiltering , 2005, IEEE Transactions on Instrumentation and Measurement.

[4]  F. Valafar Pattern Recognition Techniques in Microarray Data Analysis , 2002 .

[5]  Etienne E. Kerre,et al.  Fuzzy mathematical morphology: general concepts and decomposition properties , 1999, 1999 Third International Conference on Knowledge-Based Intelligent Information Engineering Systems. Proceedings (Cat. No.99TH8410).

[6]  Rastislav Lukac,et al.  cDNA microarray image processing using fuzzy vector filtering framework , 2005, Fuzzy Sets Syst..

[7]  Richard Alan Peters,et al.  A new algorithm for image noise reduction using mathematical morphology , 1995, IEEE Trans. Image Process..

[8]  Peter Bajcsy,et al.  An Overview of DNA Microarray Image Requirements for Automated Processing , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05) - Workshops.

[9]  F. Russo,et al.  Color edge detection in presence of gaussian noise using nonlinear pre-filtering , 2003, Proceedings of the 20th IEEE Instrumentation Technology Conference (Cat. No.03CH37412).