Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival
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R. Garrido-Oter | P. Schulze-Lefert | S. Hacquard | Paloma Durán | E. Kemen | Thorsten Thiergart | M. Agler
[1] Kazutaka Katoh,et al. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization , 2017, Briefings Bioinform..
[2] S. Hacquard,et al. Microbial interactions within the plant holobiont , 2018, Microbiome.
[3] Eoin L. Brodie,et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly , 2018, Nature Microbiology.
[4] J. Tiedje,et al. FlowPot axenic plant growth system for microbiota research , 2018, bioRxiv.
[5] G. Coupland,et al. Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition , 2017, Proceedings of the National Academy of Sciences.
[6] Sur Herrera Paredes,et al. Root microbiota drive direct integration of phosphate stress and immunity , 2017, Nature.
[7] J. Maciá‐Vicente,et al. Influence of phylogenetic conservatism and trait convergence on the interactions between fungal root endophytes and plants , 2016, The ISME Journal.
[8] R. Garrido-Oter,et al. Root nodule symbiosis in Lotus japonicus drives the establishment of distinctive rhizosphere, root, and nodule bacterial communities , 2016, Proceedings of the National Academy of Sciences.
[9] Bernard Henrissat,et al. Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi , 2016, Nature Communications.
[10] Peer Bork,et al. Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees , 2016, Nucleic Acids Res..
[11] P. Schulze-Lefert,et al. Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent , 2016, Cell.
[12] P. Greenfield,et al. Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences , 2016, Mycologia.
[13] Detlef Weigel,et al. Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation , 2016, PLoS biology.
[14] S. Tringe,et al. Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species , 2015, The New phytologist.
[15] R. Logtestijn,et al. A widespread plant-fungal-bacterial symbiosis promotes plant biodiversity, plant nutrition and seedling recruitment , 2015, The ISME Journal.
[16] Karoline Faust,et al. CoNet app: inference of biological association networks using Cytoscape , 2016, F1000Research.
[17] Alice C. McHardy,et al. Functional overlap of the Arabidopsis leaf and root microbiota , 2015, Nature.
[18] I. Baldwin,et al. Native root-associated bacteria rescue a plant from a sudden-wilt disease that emerged during continuous cropping , 2015, Proceedings of the National Academy of Sciences.
[19] Sur Herrera Paredes,et al. Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa , 2015, Science.
[20] R. Knight,et al. Microbiota and Host Nutrition across Plant and Animal Kingdoms. , 2015, Cell host & microbe.
[21] Nicolas Bailly,et al. A Higher Level Classification of All Living Organisms , 2015, PloS one.
[22] R. Henrik Nilsson,et al. A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts , 2015, Microbes and environments.
[23] Cameron Johnson,et al. Structure, variation, and assembly of the root-associated microbiomes of rice , 2015, Proceedings of the National Academy of Sciences.
[24] I. Maldonado-Mendoza,et al. A high‐throughput screening assay to identify bacterial antagonists against Fusarium verticillioides , 2014, Journal of basic microbiology.
[25] M. Thines,et al. Root-associated fungi of Arabidopsis thaliana and Microthlaspi perfoliatum , 2014, Fungal Diversity.
[26] K. Peay,et al. Endemism and functional convergence across the North American soil mycobiome , 2014, Proceedings of the National Academy of Sciences.
[27] C. Schadt,et al. A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees , 2013, PloS one.
[28] R. Henrik Nilsson,et al. Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data , 2013 .
[29] Mihai Pop,et al. Robust methods for differential abundance analysis in marker gene surveys , 2013, Nature Methods.
[30] Robert C. Edgar,et al. UPARSE: highly accurate OTU sequences from microbial amplicon reads , 2013, Nature Methods.
[31] P. Poole,et al. The plant microbiome , 2013, Genome Biology.
[32] Jonathan Friedman,et al. Inferring Correlation Networks from Genomic Survey Data , 2012, PLoS Comput. Biol..
[33] Robert C. Edgar,et al. Defining the core Arabidopsis thaliana root microbiome , 2012, Nature.
[34] R. Amann,et al. Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota , 2012, Nature.
[35] Vladimir Makarenkov,et al. T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks , 2012, Nucleic Acids Res..
[36] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.
[37] Rob Knight,et al. PyNAST: a flexible tool for aligning sequences to a template alignment , 2009, Bioinform..
[38] Andrea Lancichinetti,et al. Community detection algorithms: a comparative analysis: invited presentation, extended abstract , 2009, VALUETOOLS.
[39] J. Tiedje,et al. Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.
[40] C. Emmerling,et al. Methods for evaluating human impact on soil microorganisms based on their activity, biomass, and diversity in agricultural soils , 2006 .
[41] Eoin L. Brodie,et al. Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB , 2006, Applied and Environmental Microbiology.
[42] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[43] J. Garbaye. Tansley Review No. 76 Helper bacteria: a new dimension to the mycorrhizal symbiosis. , 1994, The New phytologist.
[44] Daniel R. Mishell,et al. A multifactor analysis , 1979 .