Metal-responsive promoter DNA compaction by the ferric uptake regulator

[1]  A. Vannini,et al.  The allosteric behavior of Fur mediates oxidative stress signal transduction in Helicobacter pylori , 2015, Front. Microbiol..

[2]  S. Busby,et al.  Evolution of bacterial transcription factors: how proteins take on new tasks, but do not always stop doing the old ones. , 2015, Trends in microbiology.

[3]  Remo Rohs,et al.  Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator , 2015, Nature Communications.

[4]  M. Fillat.  The FUR (ferric uptake regulator) superfamily: diversity and versatility of key transcriptional regulators. , 2014, Archives of biochemistry and biophysics.

[5]  N. Becker,et al.  Bacterial promoter repression by DNA looping without protein–protein binding competition , 2014, Nucleic acids research.

[6]  M. Fillat,et al.  Sequential binding of FurA from Anabaena sp. PCC 7120 to iron boxes: exploring regulation at the nanoscale. , 2014, Biochimica et biophysica acta.

[7]  Cristian Del Campo,et al.  FeON-FeOFF: the Helicobacter pylori Fur regulator commutates iron-responsive transcription by discriminative readout of opposed DNA grooves , 2013, Nucleic acids research.

[8]  H. Hassan,et al.  Transcriptional regulation by Ferric Uptake Regulator (Fur) in pathogenic bacteria , 2013, Front. Cell. Infect. Microbiol..

[9]  Charles J. Dorman,et al.  Genome architecture and global gene regulation in bacteria: making progress towards a unified model? , 2013, Nature Reviews Microbiology.

[10]  Axel Cournac,et al.  DNA Looping in Prokaryotes: Experimental and Theoretical Approaches , 2013, Journal of bacteriology.

[11]  N. Becker,et al.  Mechanism of promoter repression by Lac repressor–DNA loops , 2012, Nucleic acids research.

[12]  V. Scarlato,et al.  A Convenient and Robust In Vivo Reporter System To Monitor Gene Expression in the Human Pathogen Helicobacter pylori , 2012, Applied and Environmental Microbiology.

[13]  A. Stintzi,et al.  Structure and regulon of Campylobacter jejuni ferric uptake regulator Fur define apo-Fur regulation , 2012, Proceedings of the National Academy of Sciences.

[14]  Bronwyn G. Butcher,et al.  Characterization of the Fur Regulon in Pseudomonas syringae pv. tomato DC3000 , 2011, Journal of bacteriology.

[15]  H. Toledo,et al.  Helicobacter pylori Exhibits a Fur‐Dependent Acid Tolerance Response , 2011, Helicobacter.

[16]  S. Busby,et al.  Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression. , 2010, Current opinion in microbiology.

[17]  Alberto Danielli,et al.  Regulatory circuits in Helicobacter pylori : network motifs and regulators involved in metal-dependent responses. , 2010, FEMS microbiology reviews.

[18]  G. Amore,et al.  Built Shallow to Maintain Homeostasis and Persistent Infection: Insight into the Transcriptional Regulatory Network of the Gastric Human Pathogen Helicobacter pylori , 2010, PLoS pathogens.

[19]  E. Kuipers,et al.  Characterization of NikR-responsive promoters of urease and metal transport genes of Helicobacter mustelae , 2010, BioMetals.

[20]  Benno Müller-Hill,et al.  High local concentration: a fundamental strategy of life. , 2010, Journal of molecular biology.

[21]  M. Suyama,et al.  Transcriptome Complexity in a Genome-Reduced Bacterium , 2009, Science.

[22]  C. Rivetti.  A simple and optimized length estimator for digitized DNA contours , 2009, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

[23]  Lorenzo Costantino,et al.  Growth Phase and Metal-Dependent Transcriptional Regulation of the fecA Genes in Helicobacter pylori , 2009, Journal of bacteriology.

[24]  Johan Elf,et al.  Effects of macromolecular crowding and DNA looping on gene regulation kinetics , 2009 .

[25]  S. Ciurli,et al.  High-affinity Ni2+ binding selectively promotes binding of Helicobacter pylori NikR to its target urease promoter. , 2008, Journal of molecular biology.

[26]  E. Chiancone,et al.  The neutrophil-activating Dps protein of Helicobacter pylori, HP-NAP, adopts a mechanism different from Escherichia coli Dps to bind and condense DNA , 2007, Nucleic acids research.

[27]  R. Ebright,et al.  Upstream promoter sequences and αCTD mediate stable DNA wrapping within the RNA polymerase–promoter open complex , 2007, EMBO reports.

[28]  B. D'Autréaux,et al.  Reversible redox- and zinc-dependent dimerization of the Escherichia coli fur protein. , 2007, Biochemistry.

[29]  D. Beier,et al.  Acid-responsive gene regulation in the human pathogen Helicobacter pylori. , 2006, Journal of biotechnology.

[30]  R. Rappuoli,et al.  In Vivo Dissection of the Helicobacter pylori Fur Regulatory Circuit by Genome-Wide Location Analysis , 2006, Journal of bacteriology.

[31]  E. R. Rocha,et al.  Characterization of Bacteroides fragilis Hemolysins and Regulation and Synergistic Interactions of HlyA and HlyB , 2006, Infection and Immunity.

[32]  H. Gancz,et al.  Iron and pH Homeostasis Intersect at the Level of Fur Regulation in the Gastric Pathogen Helicobacter pylori , 2006, Infection and Immunity.

[33]  R. Rappuoli,et al.  In Vitro Analysis of Protein-Operator Interactions of the NikR and Fur Metal-Responsive Regulators of Coregulated Genes in Helicobacter pylori , 2005, Journal of bacteriology.

[34]  D. Beier,et al.  Acid-Induced Activation of the Urease Promoters Is Mediated Directly by the ArsRS Two-Component System of Helicobacter pylori , 2005, Infection and Immunity.

[35]  Leonor Saiz,et al.  DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise. , 2005, Current opinion in genetics & development.

[36]  F. Ernst,et al.  NikR-mediated regulation of Helicobacter pylori acid adaptation. , 2004, Trends in microbiology.

[37]  V. Zhurkin,et al.  DNA trajectory in the Gal repressosome. , 2004, Genes & development.

[38]  Ertugrul M. Ozbudak,et al.  Multistability in the lactose utilization network of Escherichia coli , 2004, Nature.

[39]  R. Rappuoli,et al.  An anti‐repression Fur operator upstream of the promoter is required for iron‐mediated transcriptional autoregulation in Helicobacter pylori , 2003, Molecular microbiology.

[40]  M. R. O'Brian,et al.  A Novel DNA-binding Site for the Ferric Uptake Regulator (Fur) Protein from Bradyrhizobium japonicum* , 2003, Journal of Biological Chemistry.

[41]  N. Brown,et al.  The MerR family of transcriptional regulators. , 2003, FEMS microbiology reviews.

[42]  D. Beier,et al.  Identification of Target Genes Regulated by the Two-Component System HP166-HP165 of Helicobacter pylori , 2002, Journal of bacteriology.

[43]  Y. Lyubchenko,et al.  Atomic force microscopic demonstration of DNA looping by GalR and HU. , 1997, Nucleic acids research.

[44]  E. Le Cam,et al.  Observation of binding and polymerization of Fur repressor onto operator-containing DNA with electron and atomic force microscopes. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[45]  R. Lobell,et al.  AraC-DNA looping: orientation and distance-dependent loop breaking by the cyclic AMP receptor protein. , 1991, Journal of molecular biology.

[46]  B. Müller-Hill,et al.  The three operators of the lac operon cooperate in repression. , 1990, The EMBO journal.

[47]  V. de Lorenzo,et al.  Metal ion regulation of gene expression. Fur repressor-operator interaction at the promoter region of the aerobactin system of pColV-K30. , 1988, Journal of molecular biology.

[48]  M. Ptashne,et al.  How λ repressor and λ Cro distinguish between OR1 and OR3 , 1986, Cell.

[49]  T. Dunn,et al.  An operator at -280 base pairs that is required for repression of araBAD operon promoter: addition of DNA helical turns between the operator and promoter cyclically hinders repression. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[50]  R. Schleif,et al.  DNA looping. , 1988, Science.

[51]  M. Ptashne,et al.  How lambda repressor and lambda Cro distinguish between OR1 and OR3. , 1986, Cell.