Bdellovibrio predation cycle characterized at nanometre-scale resolution with cryo-electron tomography

[1]  R. Sockett,et al.  Asymmetric peptidoglycan editing generates cell curvature in Bdellovibrio predatory bacteria , 2022, Nature Communications.

[2]  Sander K. Govers,et al.  Chromosome choreography during the non-binary cell cycle of a predatory bacterium , 2021, Current Biology.

[3]  J. V. van Dijl,et al.  Bdellovibrio bacteriovorus: a potential ‘living antibiotic’ to control bacterial pathogens , 2021, Critical reviews in microbiology.

[4]  M. Picard,et al.  Structure, Assembly, and Function of Tripartite Efflux and Type 1 Secretion Systems in Gram-Negative Bacteria , 2021, Chemical reviews.

[5]  R. Atterbury,et al.  Predatory bacteria as living antibiotics - where are we now? , 2021, Microbiology.

[6]  G. Jensen,et al.  PilY1 and minor pilins form a complex priming the type IVa pilus in Myxococcus xanthus , 2020, Nature Communications.

[7]  R. Sockett,et al.  A lysozyme with altered substrate specificity facilitates prey cell exit by the periplasmic predator Bdellovibrio bacteriovorus , 2020, Nature Communications.

[8]  Conrad C. Huang,et al.  UCSF ChimeraX: Structure visualization for researchers, educators, and developers , 2020, Protein science : a publication of the Protein Society.

[9]  Harish Vashisth,et al.  Role of Entropy in Colloidal Self-Assembly , 2020, Entropy.

[10]  S. Caulton,et al.  Bacterial invasion and killing by predatory Bdellovibrio primed by predator prey cell recognition and self protection. , 2020, Current opinion in microbiology.

[11]  F. Pantanella,et al.  Insight into the Possible Use of the Predator Bdellovibrio bacteriovorus as a Probiotic , 2020, Nutrients.

[12]  Davi R. Ortega,et al.  Repurposing a chemosensory macromolecular machine , 2020, Nature Communications.

[13]  G. Laloux.  Shedding Light on the Cell Biology of the Predatory Bacterium Bdellovibrio bacteriovorus , 2020, Frontiers in Microbiology.

[14]  Radostin Danev,et al.  Improved applicability and robustness of fast cryo-electron tomography data acquisition , 2019, Journal of structural biology.

[15]  Davi R. Ortega,et al.  Bacterial flagellar motor PL-ring disassembly subcomplexes are widespread and ancient , 2019, Proceedings of the National Academy of Sciences.

[16]  I. Cadby,et al.  Structural basis for activation of a diguanylate cyclase required for bacterial predation in Bdellovibrio , 2019, Nature Communications.

[17]  Davi R. Ortega,et al.  In situ imaging of the bacterial flagellar motor disassembly and assembly processes , 2019, The EMBO journal.

[18]  Muyuan Chen,et al.  A complete data processing workflow for CryoET and subtomogram averaging , 2019, Nature Methods.

[19]  U. Jenal,et al.  Tad Pili Play a Dynamic Role in Caulobacter crescentus Surface Colonization , 2019, mBio.

[20]  G. Jensen,et al.  In vivo structure of the Legionella type II secretion system by electron cryotomography , 2019, Nature Microbiology.

[21]  K. Thormann,et al.  Spatial arrangement of several flagellins within bacterial flagella improves motility in different environments , 2018, Nature Communications.

[22]  A. Chatzinotas,et al.  Have an Ion on It: The Life‐Cycle of Bdellovibrio bacteriovorus Viewed by Helium‐Ion Microscopy , 2018, Advanced biosystems.

[23]  Grant J. Jensen,et al.  Rapid Tilt-Series Acquisition for Electron Cryotomography , 2018, bioRxiv.

[24]  Erik Lindahl,et al.  New tools for automated high-resolution cryo-EM structure determination in RELION-3 , 2018, eLife.

[25]  K. Thormann,et al.  γ-proteobacteria eject their polar flagella under nutrient depletion, retaining flagellar motor relic structures , 2018, bioRxiv.

[26]  M. Beeby,et al.  Evolution of higher torque in Campylobacter-type bacterial flagellar motors , 2018, Scientific Reports.

[27]  R. Sockett,et al.  Bi-cellular wall modifications during Bdellovibrio bacteriovorus predation include pore-formation and L,D-transpeptidase mediated prey strengthening , 2017, Nature Microbiology.

[28]  R. Sockett,et al.  Predator Versus Pathogen: How Does Predatory Bdellovibrio bacteriovorus Interface with the Challenges of Killing Gram-Negative Pathogens in a Host Setting? , 2017, Annual review of microbiology.

[29]  S. Pietrokovski,et al.  Identification and Characterization of Differentially-Regulated Type IVb Pilin Genes Necessary for Predation in Obligate Bacterial Predators , 2017, Scientific Reports.

[30]  Catherine M. Oikonomou,et al.  Uncharacterized Bacterial Structures Revealed by Electron Cryotomography , 2017, bioRxiv.

[31]  J. Briggs,et al.  Implementation of a cryo-electron tomography tilt-scheme optimized for high resolution subtomogram averaging , 2017, Journal of structural biology.

[32]  Grant J. Jensen,et al.  Architecture of the Vibrio cholerae toxin-coregulated pilus machine revealed by electron cryotomography , 2016, Nature Microbiology.

[33]  E. Ruby,et al.  Rotation of Vibrio fischeri Flagella Produces Outer Membrane Vesicles That Induce Host Development , 2016, Journal of bacteriology.

[34]  S. Liddell,et al.  Interrupting peptidoglycan deacetylation during Bdellovibrio predator-prey interaction prevents ultimate destruction of prey wall, liberating bacterial-ghosts , 2016, Scientific Reports.

[35]  G. Jensen,et al.  Architecture of the type IVa pilus machine , 2016, Science.

[36]  J. Muñoz-Dorado,et al.  Bacterial predation: 75 years and counting! , 2016, Environmental microbiology.

[37]  Grant J Jensen,et al.  The Caltech Tomography Database and Automatic Processing Pipeline. , 2015, Journal of structural biology.

[38]  S. Pietrokovski,et al.  Cell-cycle progress in obligate predatory bacteria is dependent upon sequential sensing of prey recognition and prey quality cues , 2015, Proceedings of the National Academy of Sciences.

[39]  W. Kühlbrandt,et al.  Figures and figure supplements Structure of a type IV pilus machinery in the open and closed state , 2015 .

[40]  Nicholas A. Lyons,et al.  On the evolution of bacterial multicellularity. , 2015, Current opinion in microbiology.

[41]  Shoh Asano,et al.  Robust membrane detection based on tensor voting for electron tomography. , 2014, Journal of structural biology.

[42]  L. Søgaard-Andersen,et al.  Outside-In Assembly Pathway of the Type IV Pilus System in Myxococcus xanthus , 2013, Journal of bacteriology.

[43]  Michael M. Kazhdan,et al.  Screened poisson surface reconstruction , 2013, TOGS.

[44]  Rotem Sorek,et al.  A Global Transcriptional Switch between the Attack and Growth Forms of Bdellovibrio bacteriovorus , 2013, PloS one.

[45]  D. McDougald,et al.  The Rise of Pathogens: Predation as a Factor Driving the Evolution of Human Pathogens in the Environment , 2013, Microbial Ecology.

[46]  Pak Chung Wong,et al.  Expanding the Frontiers of Visual Analytics and Visualization , 2012, Springer London.

[47]  R. Sockett,et al.  Specialized Peptidoglycan Hydrolases Sculpt the Intra-bacterial Niche of Predatory Bdellovibrio and Increase Population Fitness , 2012, PLoS pathogens.

[48]  R. Sockett,et al.  Discrete Cyclic di-GMP-Dependent Control of Bacterial Predation versus Axenic Growth in Bdellovibrio bacteriovorus , 2012, PLoS pathogens.

[49]  H. Niki,et al.  Visualization of bacteriophage P1 infection by cryo-electron tomography of tiny Escherichia coli. , 2011, Virology.

[50]  John M Heumann,et al.  Clustering and variance maps for cryo-electron tomography using wedge-masked differences. , 2011, Journal of structural biology.

[51]  R. Sockett,et al.  Effects of Orally Administered Bdellovibrio bacteriovorus on the Well-Being and Salmonella Colonization of Young Chicks , 2011, Applied and Environmental Microbiology.

[52]  R. Sockett,et al.  Predatory Bdellovibrio Bacteria Use Gliding Motility To Scout for Prey on Surfaces , 2011, Journal of bacteriology.

[53]  Donald Bliss,et al.  Spiral Architecture of the Nucleoid in Bdellovibrio bacteriovorus , 2010, Journal of bacteriology.

[54]  R. Sockett,et al.  Shadowing the Actions of a Predator: Backlit Fluorescent Microscopy Reveals Synchronous Nonbinary Septation of Predatory Bdellovibrio inside Prey and Exit through Discrete Bdelloplast Pores , 2010, Journal of bacteriology.

[55]  S. Koval,et al.  Characterization of type IV pili in the life cycle of the predator bacterium Bdellovibrio. , 2010, Microbiology.

[56]  R. Sockett,et al.  The First Bite— Profiling the Predatosome in the Bacterial Pathogen Bdellovibrio , 2010, PloS one.

[57]  R. Sockett,et al.  A Transcriptional “Scream” Early Response of E. coli Prey to Predatory Invasion by Bdellovibrio , 2009, Current Microbiology.

[58]  R. Sockett,et al.  Roles of Multiple Flagellins in Flagellar Formation and Flagellar Growth Post Bdelloplast Lysis in Bdellovibrio bacteriovorus , 2009, Journal of molecular biology.

[59]  R. Sockett.  Predatory lifestyle of Bdellovibrio bacteriovorus. , 2009, Annual review of microbiology.

[60]  E. Jurkevitch,et al.  Predation between prokaryotes and the origin of eukaryotes , 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.

[61]  Julio O. Ortiz,et al.  The Native 3D Organization of Bacterial Polysomes , 2009, Cell.

[62]  S. Pietrokovski,et al.  Proteome-Based Comparative Analyses of Growth Stages Reveal New Cell Cycle-Dependent Functions in the Predatory Bacterium Bdellovibrio bacteriovorus , 2008, Applied and Environmental Microbiology.

[63]  R. Sockett,et al.  Laboratory Maintenance of Bdellovibrio , 2008, Current protocols in microbiology.

[64]  M. Borgnia,et al.  Three-Dimensional Imaging of the Highly Bent Architecture of Bdellovibrio bacteriovorus by Using Cryo-Electron Tomography , 2008, Journal of bacteriology.

[65]  Y. Lee.  Colloidal Self‐Assembly , 2007 .

[66]  R. Sockett,et al.  Predation by Bdellovibrio bacteriovorus HD100 Requires Type IV Pili , 2007, Journal of bacteriology.

[67]  J. McIntosh,et al.  The Molecular Architecture of Axonemes Revealed by Cryoelectron Tomography , 2006, Science.

[68]  S. Schuster,et al.  Characterizing the flagellar filament and the role of motility in bacterial prey-penetration by Bdellovibrio bacteriovorus , 2006, Molecular microbiology.

[69]  David N Mastronarde,et al.  Automated electron microscope tomography using robust prediction of specimen movements. , 2005, Journal of structural biology.

[70]  P. Jagtap,et al.  A Predator Unmasked: Life Cycle of Bdellovibrio bacteriovorus from a Genomic Perspective , 2004, Science.

[71]  W Baumeister,et al.  Electron tomography of molecules and cells. , 1999, Trends in cell biology.

[72]  Tony Lindeberg,et al.  Feature Detection with Automatic Scale Selection , 1998, International Journal of Computer Vision.

[73]  M. Karp,et al.  Translocation of an outer membrane protein into prey cytoplasmic membranes by bdellovibrios , 1994, Journal of bacteriology.

[74]  M. Mccann,et al.  A new model for the penetration of prey cells by bdellovibrios , 1990, Journal of bacteriology.

[75]  L. Thomashow,et al.  Isolation and composition of sheathed flagella from Bdellovibrio bacteriovorus 109J , 1985, Journal of bacteriology.

[76]  J. H. Parish.  Developmental Biology of Prokaryotes , 1980 .

[77]  M. Thomashow,et al.  Intraperiplasmic growth of Bdellovibrio bacteriovorus 109J: attachment of long-chain fatty acids to escherichia coli peptidoglycan , 1978, Journal of bacteriology.

[78]  M. Thomashow,et al.  Intraperiplasmic growth of Bdellovibrio bacteriovorus 109J: solubilization of Escherichia coli peptidoglycan , 1978, Journal of bacteriology.

[79]  M. Thomashow,et al.  Intraperiplasmic growth of Bdellovibrio bacteriovorus 109J: N-deacetylation of Escherichia coli peptidoglycan amino sugars , 1978, Journal of bacteriology.

[80]  D. Abram,et al.  Penetration of Bdellovibrio bacteriovorus into Host Cells , 1974, Journal of bacteriology.

[81]  J. Burnham,et al.  Ultrastructure and Cell Division of a Facultatively Parasitic Strain of Bdellovibrio bacteriovorus , 1970, Journal of bacteriology.

[82]  J. Burnham,et al.  Electron Microscopic Observations on the Penetration of Bdellovibrio bacteriovorus into Gram-negative Bacterial Hosts , 1968, Journal of bacteriology.

[83]  B. Byers.  Structure and formation of ribosome crystals in hypothermic chick embryo cells. , 1967, Journal of molecular biology.

[84]  M. Starr,et al.  Parasitic Interaction of Bdellovibrio bacteriovorus with Other Bacteria , 1966, Journal of bacteriology.

[85]  H. Petzold,et al.  Untersuchungen über einen obligat parasitischen Mikroorganismus mit lytischer Aktivität für Pseudomonas‐Bakterien , 1962 .

[86]  Wen Jiang,et al.  EMAN2: an extensible image processing suite for electron microscopy. , 2007, Journal of structural biology.

[87]  John W Sedat,et al.  UCSF tomography: an integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction. , 2007, Journal of structural biology.

[88]  M. Starr,et al.  Bdellovibrio bacteriovorus gen. et sp. n., a predatory, ectoparasitic, and bacteriolytic microorganism , 2005, Antonie van Leeuwenhoek.

[89]  M. Starr,et al.  Ultrastructural aspects of localized membrane damage in Spirillum serpens VHL early in its association with Bdellovibrio bacteriovorus 109D , 2004, Archives of Microbiology.

[90]  J R Kremer,et al.  Computer visualization of three-dimensional image data using IMOD. , 1996, Journal of structural biology.