Climate factors and host chemical profiles jointly drives the bacterial community assembly in Mussaenda pubescens stems.

[1]  Phillip P. A. Staniczenko,et al.  Ecological network structure in response to community assembly processes over evolutionary time , 2023, Molecular ecology.

[2]  F. Dini-Andreote,et al.  Multifaceted roles of flavonoids mediating plant-microbe interactions , 2022, Microbiome.

[3]  Lauren C. Cline,et al.  Genetic modification of flavone biosynthesis in rice enhances biofilm formation of soil diazotrophic bacteria and biological nitrogen fixation , 2022, Plant biotechnology journal.

[4]  Dayong Zhao,et al.  Contrasting assembly mechanisms explain the biogeographic patterns of benthic bacterial and fungal communities on the Tibetan Plateau. , 2022, Environmental research.

[5]  R. Zeng,et al.  The importance of conditionally rare taxa for the assembly and interaction of fungal communities in mangrove sediments , 2022, Applied Microbiology and Biotechnology.

[6]  Yahai Lu,et al.  Rare Species-Driven Diversity–Ecosystem Multifunctionality Relationships are Promoted by Stochastic Community Assembly , 2022, mBio.

[7]  M. Schloter,et al.  Dynamics of Bacterial Root Endophytes of Malus domestica Plants Grown in Field Soils Affected by Apple Replant Disease , 2022, Frontiers in Microbiology.

[8]  Q. Huang,et al.  Distinct Responses of Rare and Abundant Microbial Taxa to In Situ Chemical Stabilization of Cadmium-Contaminated Soil , 2021, mSystems.

[9]  Andrea C. Ueno,et al.  Seed-borne fungal endophytes constrain reproductive success of host plants under ozone pollution. , 2021, Environmental research.

[10]  Dianxiang Zhang,et al.  Floral fungal-bacterial community structure and co-occurrence patterns in four sympatric island plant species. , 2021, Fungal biology.

[11]  H. Chu,et al.  Distinct Community Assembly Processes of Abundant and Rare Soil Bacteria in Coastal Wetlands along an Inundation Gradient , 2020, mSystems.

[12]  Randi L. Rollins,et al.  Plant part and a steep environmental gradient predict plant microbial composition in a tropical watershed , 2020, The ISME Journal.

[13]  C. Vacher,et al.  The plant endosphere world - bacterial life within plants. , 2020, Environmental microbiology.

[14]  A. Arkin,et al.  A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming , 2020, Nature Communications.

[15]  Shuo Jiao,et al.  Stochastic processes shape the biogeographic variations in core bacterial communities between aerial and belowground compartments of common bean. , 2020, Environmental microbiology.

[16]  R. Sommaruga,et al.  The balance between deterministic and stochastic processes in structuring lake bacterioplankton community over time , 2020, Molecular ecology.

[17]  Yongming Luo,et al.  Biogeography and diversity patterns of abundant and rare bacterial communities in rice paddy soils across China. , 2020, The Science of the total environment.

[18]  N. Zhang,et al.  Divergent Co-occurrence Patterns and Assembly Processes Structure the Abundant and Rare Bacterial Communities in a Salt Marsh Ecosystem , 2020, Applied and Environmental Microbiology.

[19]  Yahai Lu,et al.  Abundant fungi adapt to broader environmental gradients than rare fungi in agricultural fields , 2020, Global change biology.

[20]  X. Cheng,et al.  Multifunctionality of biocrusts is positively predicted by network topologies consistent with interspecies facilitation , 2020, Molecular ecology.

[21]  Xiaohua Zhang,et al.  Spatiotemporal dynamics of the archaeal community in coastal sediments: assembly process and co-occurrence relationship , 2020, The ISME Journal.

[22]  Yahai Lu,et al.  Soil pH and temperature regulate assembly processes of abundant and rare bacterial communities in agricultural ecosystems. , 2020, Environmental microbiology.

[23]  Ke Xing,et al.  Root exudates-driven rhizosphere recruitment of the plant growth-promoting rhizobacterium Bacillus flexus KLBMP 4941 and its growth-promoting effect on the coastal halophyte Limonium sinense under salt stress. , 2020, Ecotoxicology and environmental safety.

[24]  J. Pereira,et al.  Epiphytic and Endophytic Bacteria on Olive Tree Phyllosphere: Exploring Tissue and Cultivar Effect , 2020, Microbial Ecology.

[25]  E. Siemann,et al.  Root flavonoids are related to enhanced AMF colonization of an invasive tree , 2020, AoB PLANTS.

[26]  E. Purdom,et al.  Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics , 2020, Nature Communications.

[27]  J. Silberg,et al.  Soil organic matter attenuates the efficacy of flavonoid-based plant-microbe communication , 2020, Science Advances.

[28]  A. Isabwe,et al.  Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons , 2019, Microbiome.

[29]  J. Harrison,et al.  The diversity and distribution of endophytes across biomes, plant phylogeny, and host tissues-how far have we come and where do we go from here? , 2020, Environmental microbiology.

[30]  D. Zak,et al.  Environmental filtering structures fungal endophyte communities in tree bark , 2019, Molecular ecology.

[31]  G. May,et al.  Host availability drives distributions of fungal endophytes in the imperilled boreal realm , 2019, Nature Ecology & Evolution.

[32]  P. Reich,et al.  When Do Ecosystem Services Depend on Rare Species? , 2019, Trends in ecology & evolution.

[33]  Xiangping Wang,et al.  Leaf and Root Endospheres Harbor Lower Fungal Diversity and Less Complex Fungal Co-occurrence Patterns Than Rhizosphere , 2019, Front. Microbiol..

[34]  H. Korpelainen,et al.  Distinct co-occurrence patterns and driving forces of rare and abundant bacterial subcommunities following a glacial retreat in the eastern Tibetan Plateau , 2019, Biology and Fertility of Soils.

[35]  Shomaila Sikandar,et al.  Plant beneficial endophytic bacteria: Mechanisms, diversity, host range and genetic determinants. , 2019, Microbiological research.

[36]  Liang Chen,et al.  Host genotype strongly influences phyllosphere fungal communities associated with Mussaenda pubescens var. alba (Rubiaceae) , 2018, Fungal Ecology.

[37]  M. V. D. van der Heijden,et al.  Keystone taxa as drivers of microbiome structure and functioning , 2018, Nature Reviews Microbiology.

[38]  Bangqin Huang,et al.  Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom , 2018, The ISME Journal.

[39]  Jizhong Zhou,et al.  Stochastic Community Assembly: Does It Matter in Microbial Ecology? , 2017, Microbiology and Molecular Biology Reviews.

[40]  Shuo Jiao,et al.  Biogeography and ecological diversity patterns of rare and abundant bacteria in oil‐contaminated soils , 2017, Molecular ecology.

[41]  M. Sharifi,et al.  Bacillus subtilis affects miRNAs and flavanoids production in Agrobacterium-Tobacco interaction. , 2017, Plant physiology and biochemistry : PPB.

[42]  R. Oono,et al.  Distance decay relationships in foliar fungal endophytes are driven by rare taxa , 2017, Environmental microbiology.

[43]  Alexander Lex,et al.  UpSetR: an R package for the visualization of intersecting sets and their properties , 2017, bioRxiv.

[44]  Yi Huang,et al.  Similar community assembly mechanisms underlie similar biogeography of rare and abundant bacteria in lakes on Yungui Plateau, China , 2017 .

[45]  Xiaowei Zhang,et al.  Where less may be more: how the rare biosphere pulls ecosystems strings , 2017, The ISME Journal.

[46]  Yan Zhang,et al.  Identifying the key taxonomic categories that characterize microbial community diversity using full-scale classification: a case study of microbial communities in the sediments of Hangzhou Bay. , 2016, FEMS microbiology ecology.

[47]  J. Gilbert,et al.  Carbon constrains fungal endophyte assemblages along the timberline. , 2016, Environmental microbiology.

[48]  M. Awasthi,et al.  Recovery of phosphate from aqueous solution by magnesium oxide decorated magnetic biochar and its potential as phosphate-based fertilizer substitute. , 2016, Bioresource technology.

[49]  Jizhong Zhou,et al.  The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages. , 2016, Ecology letters.

[50]  P. Paolicelli,et al.  Evaluation of different extraction methods from pomegranate whole fruit or peels and the antioxidant and antiproliferative activity of the polyphenolic fraction. , 2016, Food chemistry.

[51]  Dianxiang Zhang,et al.  Fourteen additional microsatellite markers for Mussaenda pubescens and cross-species amplification , 2015, Journal of Genetics.

[52]  X. Bai,et al.  Reproductive isolation between sympatric sister species, Mussaenda kwangtungensis and M. pubescens var. alba. , 2015, Journal of integrative plant biology.

[53]  L. Tedersoo,et al.  Stochastic distribution of small soil eukaryotes resulting from high dispersal and drift in a local environment , 2015, The ISME Journal.

[54]  G. Berg,et al.  The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes , 2015, Microbiology and Molecular Reviews.

[55]  Luis Pedro Coelho,et al.  Structure and function of the global ocean microbiome , 2015, Science.

[56]  Lemian Liu,et al.  The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China , 2015, The ISME Journal.

[57]  M. Lynch,et al.  Ecology and exploration of the rare biosphere , 2015, Nature Reviews Microbiology.

[58]  Roland Eils,et al.  circlize implements and enhances circular visualization in R , 2014, Bioinform..

[59]  Noah Fierer,et al.  Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria. , 2014, Ecology letters.

[60]  P. Coley,et al.  Communities of fungal endophytes in tropical forest grasses: highly diverse host- and habitat generalists characterized by strong spatial structure , 2014 .

[61]  James R. Cole,et al.  Ribosomal Database Project: data and tools for high throughput rRNA analysis , 2013, Nucleic Acids Res..

[62]  Jiajie Zhang,et al.  PEAR: a fast and accurate Illumina Paired-End reAd mergeR , 2013, Bioinform..

[63]  Robert C. Edgar,et al.  UPARSE: highly accurate OTU sequences from microbial amplicon reads , 2013, Nature Methods.

[64]  Wilfried Thuiller,et al.  Rare Species Support Vulnerable Functions in High-Diversity Ecosystems , 2013, PLoS biology.

[65]  J. Raes,et al.  Microbial interactions: from networks to models , 2012, Nature Reviews Microbiology.

[66]  A. Konopka,et al.  Stochastic and deterministic assembly processes in subsurface microbial communities , 2012, The ISME Journal.

[67]  Jonathan M. Chase,et al.  Disentangling the importance of ecological niches from stochastic processes across scales , 2011, Philosophical Transactions of the Royal Society B: Biological Sciences.

[68]  S. Hubbell,et al.  The unified neutral theory of biodiversity and biogeography at age ten. , 2011, Trends in ecology & evolution.

[69]  Rob Knight,et al.  UCHIME improves sensitivity and speed of chimera detection , 2011, Bioinform..

[70]  Robert A. Edwards,et al.  Quality control and preprocessing of metagenomic datasets , 2011, Bioinform..

[71]  Ai-min Li,et al.  Cryptic dioecy in Mussaenda pubescens (Rubiaceae): a species with stigma-height dimorphism. , 2010, Annals of botany.

[72]  Jonathan M. Chase,et al.  Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments , 2010, Science.

[73]  Christophe Clément,et al.  Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization , 2010 .

[74]  Adam P. Arkin,et al.  FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix , 2009, Molecular biology and evolution.

[75]  S. Horvath,et al.  WGCNA: an R package for weighted correlation network analysis , 2008, BMC Bioinformatics.

[76]  S. He,et al.  Role of stomata in plant innate immunity and foliar bacterial diseases. , 2008, Annual review of phytopathology.

[77]  Thomas D. Schmittgen,et al.  Analyzing real-time PCR data by the comparative CT method , 2008, Nature Protocols.

[78]  Stéphane Dray,et al.  Spatial modelling: a comprehensive framework for principal coordinate analysis of neighbour matrices (PCNM) , 2006 .

[79]  K. R. Clarke,et al.  On resemblance measures for ecological studies, including taxonomic dissimilarities and a zero-adjusted Bray–Curtis coefficient for denuded assemblages , 2006 .

[80]  Stephen P. Hubbell,et al.  Neutral theory in community ecology and the hypothesis of functional equivalence , 2005 .

[81]  P. Dixon VEGAN, a package of R functions for community ecology , 2003 .

[82]  Thomas D. Schmittgen,et al.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.

[83]  K. Hyde,et al.  Identification of endophytic fungi from Livistona chinensis based on morphology and rDNA sequences. , 2000, The New phytologist.

[84]  M. Loreau,et al.  Biodiversity and ecosystem productivity in a fluctuating environment: the insurance hypothesis. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[85]  B. D. Oomah,et al.  Antioxidant Activity and Total Phenolics in Selected Fruits, Vegetables, and Grain Products , 1998 .

[86]  S. McGrath,et al.  Comparison of three wet digestion methods for the determination of plant sulphur by inductively coupled plasma atomic emission spectroscopy (ICP‐AES) , 1994 .

[87]  A. Uitterlinden,et al.  Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA , 1993, Applied and environmental microbiology.

[88]  C. Dai,et al.  Plant symbionts: keys to the phytosphere , 2012, Symbiosis.

[89]  S. Langenheder,et al.  Regional invariance among microbial communities. , 2010, Ecology letters.

[90]  Andy Liaw,et al.  Classification and Regression by randomForest , 2007 .

[91]  Gábor Csárdi,et al.  The igraph software package for complex network research , 2006 .

[92]  R. Hell Molecular physiology of plant sulfur metabolism , 1997, Planta.

[93]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .