Climate factors and host chemical profiles jointly drives the bacterial community assembly in Mussaenda pubescens stems.
暂无分享,去创建一个
Xi Xiao | Qixin Lv | Xin Qian | Han-Yan Li | Yonglong Wang | Song Feng | Xinghao Tang | Weiwei Tian
[1] Phillip P. A. Staniczenko,et al. Ecological network structure in response to community assembly processes over evolutionary time , 2023, Molecular ecology.
[2] F. Dini-Andreote,et al. Multifaceted roles of flavonoids mediating plant-microbe interactions , 2022, Microbiome.
[3] Lauren C. Cline,et al. Genetic modification of flavone biosynthesis in rice enhances biofilm formation of soil diazotrophic bacteria and biological nitrogen fixation , 2022, Plant biotechnology journal.
[4] Dayong Zhao,et al. Contrasting assembly mechanisms explain the biogeographic patterns of benthic bacterial and fungal communities on the Tibetan Plateau. , 2022, Environmental research.
[5] R. Zeng,et al. The importance of conditionally rare taxa for the assembly and interaction of fungal communities in mangrove sediments , 2022, Applied Microbiology and Biotechnology.
[6] Yahai Lu,et al. Rare Species-Driven Diversity–Ecosystem Multifunctionality Relationships are Promoted by Stochastic Community Assembly , 2022, mBio.
[7] M. Schloter,et al. Dynamics of Bacterial Root Endophytes of Malus domestica Plants Grown in Field Soils Affected by Apple Replant Disease , 2022, Frontiers in Microbiology.
[8] Q. Huang,et al. Distinct Responses of Rare and Abundant Microbial Taxa to In Situ Chemical Stabilization of Cadmium-Contaminated Soil , 2021, mSystems.
[9] Andrea C. Ueno,et al. Seed-borne fungal endophytes constrain reproductive success of host plants under ozone pollution. , 2021, Environmental research.
[10] Dianxiang Zhang,et al. Floral fungal-bacterial community structure and co-occurrence patterns in four sympatric island plant species. , 2021, Fungal biology.
[11] H. Chu,et al. Distinct Community Assembly Processes of Abundant and Rare Soil Bacteria in Coastal Wetlands along an Inundation Gradient , 2020, mSystems.
[12] Randi L. Rollins,et al. Plant part and a steep environmental gradient predict plant microbial composition in a tropical watershed , 2020, The ISME Journal.
[13] C. Vacher,et al. The plant endosphere world - bacterial life within plants. , 2020, Environmental microbiology.
[14] A. Arkin,et al. A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming , 2020, Nature Communications.
[15] Shuo Jiao,et al. Stochastic processes shape the biogeographic variations in core bacterial communities between aerial and belowground compartments of common bean. , 2020, Environmental microbiology.
[16] R. Sommaruga,et al. The balance between deterministic and stochastic processes in structuring lake bacterioplankton community over time , 2020, Molecular ecology.
[17] Yongming Luo,et al. Biogeography and diversity patterns of abundant and rare bacterial communities in rice paddy soils across China. , 2020, The Science of the total environment.
[18] N. Zhang,et al. Divergent Co-occurrence Patterns and Assembly Processes Structure the Abundant and Rare Bacterial Communities in a Salt Marsh Ecosystem , 2020, Applied and Environmental Microbiology.
[19] Yahai Lu,et al. Abundant fungi adapt to broader environmental gradients than rare fungi in agricultural fields , 2020, Global change biology.
[20] X. Cheng,et al. Multifunctionality of biocrusts is positively predicted by network topologies consistent with interspecies facilitation , 2020, Molecular ecology.
[21] Xiaohua Zhang,et al. Spatiotemporal dynamics of the archaeal community in coastal sediments: assembly process and co-occurrence relationship , 2020, The ISME Journal.
[22] Yahai Lu,et al. Soil pH and temperature regulate assembly processes of abundant and rare bacterial communities in agricultural ecosystems. , 2020, Environmental microbiology.
[23] Ke Xing,et al. Root exudates-driven rhizosphere recruitment of the plant growth-promoting rhizobacterium Bacillus flexus KLBMP 4941 and its growth-promoting effect on the coastal halophyte Limonium sinense under salt stress. , 2020, Ecotoxicology and environmental safety.
[24] J. Pereira,et al. Epiphytic and Endophytic Bacteria on Olive Tree Phyllosphere: Exploring Tissue and Cultivar Effect , 2020, Microbial Ecology.
[25] E. Siemann,et al. Root flavonoids are related to enhanced AMF colonization of an invasive tree , 2020, AoB PLANTS.
[26] E. Purdom,et al. Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics , 2020, Nature Communications.
[27] J. Silberg,et al. Soil organic matter attenuates the efficacy of flavonoid-based plant-microbe communication , 2020, Science Advances.
[28] A. Isabwe,et al. Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons , 2019, Microbiome.
[29] J. Harrison,et al. The diversity and distribution of endophytes across biomes, plant phylogeny, and host tissues-how far have we come and where do we go from here? , 2020, Environmental microbiology.
[30] D. Zak,et al. Environmental filtering structures fungal endophyte communities in tree bark , 2019, Molecular ecology.
[31] G. May,et al. Host availability drives distributions of fungal endophytes in the imperilled boreal realm , 2019, Nature Ecology & Evolution.
[32] P. Reich,et al. When Do Ecosystem Services Depend on Rare Species? , 2019, Trends in ecology & evolution.
[33] Xiangping Wang,et al. Leaf and Root Endospheres Harbor Lower Fungal Diversity and Less Complex Fungal Co-occurrence Patterns Than Rhizosphere , 2019, Front. Microbiol..
[34] H. Korpelainen,et al. Distinct co-occurrence patterns and driving forces of rare and abundant bacterial subcommunities following a glacial retreat in the eastern Tibetan Plateau , 2019, Biology and Fertility of Soils.
[35] Shomaila Sikandar,et al. Plant beneficial endophytic bacteria: Mechanisms, diversity, host range and genetic determinants. , 2019, Microbiological research.
[36] Liang Chen,et al. Host genotype strongly influences phyllosphere fungal communities associated with Mussaenda pubescens var. alba (Rubiaceae) , 2018, Fungal Ecology.
[37] M. V. D. van der Heijden,et al. Keystone taxa as drivers of microbiome structure and functioning , 2018, Nature Reviews Microbiology.
[38] Bangqin Huang,et al. Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom , 2018, The ISME Journal.
[39] Jizhong Zhou,et al. Stochastic Community Assembly: Does It Matter in Microbial Ecology? , 2017, Microbiology and Molecular Biology Reviews.
[40] Shuo Jiao,et al. Biogeography and ecological diversity patterns of rare and abundant bacteria in oil‐contaminated soils , 2017, Molecular ecology.
[41] M. Sharifi,et al. Bacillus subtilis affects miRNAs and flavanoids production in Agrobacterium-Tobacco interaction. , 2017, Plant physiology and biochemistry : PPB.
[42] R. Oono,et al. Distance decay relationships in foliar fungal endophytes are driven by rare taxa , 2017, Environmental microbiology.
[43] Alexander Lex,et al. UpSetR: an R package for the visualization of intersecting sets and their properties , 2017, bioRxiv.
[44] Yi Huang,et al. Similar community assembly mechanisms underlie similar biogeography of rare and abundant bacteria in lakes on Yungui Plateau, China , 2017 .
[45] Xiaowei Zhang,et al. Where less may be more: how the rare biosphere pulls ecosystems strings , 2017, The ISME Journal.
[46] Yan Zhang,et al. Identifying the key taxonomic categories that characterize microbial community diversity using full-scale classification: a case study of microbial communities in the sediments of Hangzhou Bay. , 2016, FEMS microbiology ecology.
[47] J. Gilbert,et al. Carbon constrains fungal endophyte assemblages along the timberline. , 2016, Environmental microbiology.
[48] M. Awasthi,et al. Recovery of phosphate from aqueous solution by magnesium oxide decorated magnetic biochar and its potential as phosphate-based fertilizer substitute. , 2016, Bioresource technology.
[49] Jizhong Zhou,et al. The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages. , 2016, Ecology letters.
[50] P. Paolicelli,et al. Evaluation of different extraction methods from pomegranate whole fruit or peels and the antioxidant and antiproliferative activity of the polyphenolic fraction. , 2016, Food chemistry.
[51] Dianxiang Zhang,et al. Fourteen additional microsatellite markers for Mussaenda pubescens and cross-species amplification , 2015, Journal of Genetics.
[52] X. Bai,et al. Reproductive isolation between sympatric sister species, Mussaenda kwangtungensis and M. pubescens var. alba. , 2015, Journal of integrative plant biology.
[53] L. Tedersoo,et al. Stochastic distribution of small soil eukaryotes resulting from high dispersal and drift in a local environment , 2015, The ISME Journal.
[54] G. Berg,et al. The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes , 2015, Microbiology and Molecular Reviews.
[55] Luis Pedro Coelho,et al. Structure and function of the global ocean microbiome , 2015, Science.
[56] Lemian Liu,et al. The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China , 2015, The ISME Journal.
[57] M. Lynch,et al. Ecology and exploration of the rare biosphere , 2015, Nature Reviews Microbiology.
[58] Roland Eils,et al. circlize implements and enhances circular visualization in R , 2014, Bioinform..
[59] Noah Fierer,et al. Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria. , 2014, Ecology letters.
[60] P. Coley,et al. Communities of fungal endophytes in tropical forest grasses: highly diverse host- and habitat generalists characterized by strong spatial structure , 2014 .
[61] James R. Cole,et al. Ribosomal Database Project: data and tools for high throughput rRNA analysis , 2013, Nucleic Acids Res..
[62] Jiajie Zhang,et al. PEAR: a fast and accurate Illumina Paired-End reAd mergeR , 2013, Bioinform..
[63] Robert C. Edgar,et al. UPARSE: highly accurate OTU sequences from microbial amplicon reads , 2013, Nature Methods.
[64] Wilfried Thuiller,et al. Rare Species Support Vulnerable Functions in High-Diversity Ecosystems , 2013, PLoS biology.
[65] J. Raes,et al. Microbial interactions: from networks to models , 2012, Nature Reviews Microbiology.
[66] A. Konopka,et al. Stochastic and deterministic assembly processes in subsurface microbial communities , 2012, The ISME Journal.
[67] Jonathan M. Chase,et al. Disentangling the importance of ecological niches from stochastic processes across scales , 2011, Philosophical Transactions of the Royal Society B: Biological Sciences.
[68] S. Hubbell,et al. The unified neutral theory of biodiversity and biogeography at age ten. , 2011, Trends in ecology & evolution.
[69] Rob Knight,et al. UCHIME improves sensitivity and speed of chimera detection , 2011, Bioinform..
[70] Robert A. Edwards,et al. Quality control and preprocessing of metagenomic datasets , 2011, Bioinform..
[71] Ai-min Li,et al. Cryptic dioecy in Mussaenda pubescens (Rubiaceae): a species with stigma-height dimorphism. , 2010, Annals of botany.
[72] Jonathan M. Chase,et al. Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments , 2010, Science.
[73] Christophe Clément,et al. Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization , 2010 .
[74] Adam P. Arkin,et al. FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix , 2009, Molecular biology and evolution.
[75] S. Horvath,et al. WGCNA: an R package for weighted correlation network analysis , 2008, BMC Bioinformatics.
[76] S. He,et al. Role of stomata in plant innate immunity and foliar bacterial diseases. , 2008, Annual review of phytopathology.
[77] Thomas D. Schmittgen,et al. Analyzing real-time PCR data by the comparative CT method , 2008, Nature Protocols.
[78] Stéphane Dray,et al. Spatial modelling: a comprehensive framework for principal coordinate analysis of neighbour matrices (PCNM) , 2006 .
[79] K. R. Clarke,et al. On resemblance measures for ecological studies, including taxonomic dissimilarities and a zero-adjusted Bray–Curtis coefficient for denuded assemblages , 2006 .
[80] Stephen P. Hubbell,et al. Neutral theory in community ecology and the hypothesis of functional equivalence , 2005 .
[81] P. Dixon. VEGAN, a package of R functions for community ecology , 2003 .
[82] Thomas D. Schmittgen,et al. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.
[83] K. Hyde,et al. Identification of endophytic fungi from Livistona chinensis based on morphology and rDNA sequences. , 2000, The New phytologist.
[84] M. Loreau,et al. Biodiversity and ecosystem productivity in a fluctuating environment: the insurance hypothesis. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[85] B. D. Oomah,et al. Antioxidant Activity and Total Phenolics in Selected Fruits, Vegetables, and Grain Products , 1998 .
[86] S. McGrath,et al. Comparison of three wet digestion methods for the determination of plant sulphur by inductively coupled plasma atomic emission spectroscopy (ICP‐AES) , 1994 .
[87] A. Uitterlinden,et al. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA , 1993, Applied and environmental microbiology.
[88] C. Dai,et al. Plant symbionts: keys to the phytosphere , 2012, Symbiosis.
[89] S. Langenheder,et al. Regional invariance among microbial communities. , 2010, Ecology letters.
[90] Andy Liaw,et al. Classification and Regression by randomForest , 2007 .
[91] Gábor Csárdi,et al. The igraph software package for complex network research , 2006 .
[92] R. Hell. Molecular physiology of plant sulfur metabolism , 1997, Planta.
[93] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .