Calibrationless joint compressed sensing reconstruction for rapid parallel MRI

Abstract 3D magnetic resonance imaging (3D MRI) or multi-slice MRI involves significant data acquisition time. Traditionally, scanning rate of conventional MRI is restricted due to inherent physiological and instrumental limitations. In multi-slice parallel MRI (multi-slice pMRI) adjacent slices are highly correlated, so one can interpolate missing k-space data of any slice from its adjacent slices. Moreover, images corresponding to different coils are also highly correlated as they represent the same field of view (FoV) with different spatial sensitivity functions. Exploiting above redundancies in multi-slice pMRI, we propose a joint compressed sensing (CS) reconstruction model, which contains two joint sparsity promoting regularization terms based on wavelet forest sparsity and joint total variations (JTV). Extensive experiments are carried out for performance evaluations and compared with existing methods using real multi-slice pMRI datasets. Results in terms of CS reconstruction quality show significant improvements compared to the state-of-the-art. Additionally, implementation of the proposed method is done using multi-core CPU and GP-GPU in a hybrid computing environment to study its clinical feasibility in terms of computational time.

[1]  Angshul Majumdar,et al.  Calibration-less multi-coil MR image reconstruction. , 2012, Magnetic resonance imaging.

[2]  Dong Liang,et al.  Learning Joint-Sparse Codes for Calibration-Free Parallel MR Imaging , 2018, IEEE Transactions on Medical Imaging.

[3]  Emmanuel J. Candès,et al.  Robust uncertainty principles: exact signal reconstruction from highly incomplete frequency information , 2004, IEEE Transactions on Information Theory.

[4]  D. Donoho,et al.  Sparse MRI: The application of compressed sensing for rapid MR imaging , 2007, Magnetic resonance in medicine.

[5]  Junzhou Huang,et al.  Learning with structured sparsity , 2009, ICML '09.

[6]  Justin P. Haldar,et al.  Image Reconstruction From Highly Undersampled $( {\bf k}, {t})$-Space Data With Joint Partial Separability and Sparsity Constraints , 2012, IEEE Transactions on Medical Imaging.

[7]  M. Lustig,et al.  SPIRiT: Iterative self‐consistent parallel imaging reconstruction from arbitrary k‐space , 2010, Magnetic resonance in medicine.

[8]  Bhabesh Deka,et al.  Wavelet Tree Support Detection for Compressed Sensing MRI Reconstruction , 2018, IEEE Signal Processing Letters.

[9]  Junzhou Huang,et al.  Forest Sparsity for Multi-Channel Compressive Sensing , 2012, IEEE Transactions on Signal Processing.

[10]  Angshul Majumdar,et al.  Compressed Sensing for Magnetic Resonance Image Reconstruction , 2015 .

[11]  Bhabesh Deka,et al.  Compressed Sensing Magnetic Resonance Image Reconstruction Algorithms , 2018, Springer Series on Bio- and Neurosystems.

[12]  Michael Elad,et al.  ESPIRiT—an eigenvalue approach to autocalibrating parallel MRI: Where SENSE meets GRAPPA , 2014, Magnetic resonance in medicine.

[13]  Jingwei Zhuo,et al.  P‐LORAKS: Low‐rank modeling of local k‐space neighborhoods with parallel imaging data , 2016, Magnetic resonance in medicine.

[14]  Robert D. Nowak,et al.  Wavelet-based statistical signal processing using hidden Markov models , 1998, IEEE Trans. Signal Process..

[15]  Michael Elad,et al.  Calibrationless parallel imaging reconstruction based on structured low‐rank matrix completion , 2013, Magnetic resonance in medicine.

[16]  Jeffrey A. Fessler,et al.  Efficient Dynamic Parallel MRI Reconstruction for the Low-Rank Plus Sparse Model , 2019, IEEE Transactions on Computational Imaging.

[17]  Junzhou Huang,et al.  Calibrationless Parallel MRI with Joint Total Variation Regularization , 2013, MICCAI.

[18]  Bhabesh Deka,et al.  Efficient interpolated compressed sensing reconstruction scheme for 3D MRI , 2018, IET Image Process..

[19]  Kawin Setsompop,et al.  Improving parallel imaging by jointly reconstructing multi‐contrast data , 2018, Magnetic resonance in medicine.

[20]  L. Ying,et al.  Accelerating SENSE using compressed sensing , 2009, Magnetic resonance in medicine.

[21]  T. Hohage,et al.  Image reconstruction by regularized nonlinear inversion—Joint estimation of coil sensitivities and image content , 2008, Magnetic resonance in medicine.

[22]  Junzhou Huang,et al.  Efficient MR image reconstruction for compressed MR imaging , 2011, Medical Image Anal..

[23]  Armando Manduca,et al.  Calibrationless parallel MRI using CLEAR , 2011, 2011 Conference Record of the Forty Fifth Asilomar Conference on Signals, Systems and Computers (ASILOMAR).

[24]  Ben Adcock,et al.  Efficient Compressed Sensing SENSE pMRI Reconstruction With Joint Sparsity Promotion , 2016, IEEE Transactions on Medical Imaging.

[25]  Zhong Chen,et al.  Undersampled MRI reconstruction with patch-based directional wavelets. , 2012, Magnetic resonance imaging.

[26]  Junzhou Huang,et al.  Fast multi-contrast MRI reconstruction. , 2014, Magnetic resonance imaging.

[27]  Frank Ong,et al.  ENLIVE: An Efficient Nonlinear Method for Calibrationless and Robust Parallel Imaging , 2017, Scientific Reports.

[28]  Robin M Heidemann,et al.  Generalized autocalibrating partially parallel acquisitions (GRAPPA) , 2002, Magnetic resonance in medicine.

[29]  B. Deka,et al.  Magnetic resonance image reconstruction using fast interpolated compressed sensing , 2018 .