Snurportin1, an m3G‐cap‐specific nuclear import receptor with a novel domain structure

The nuclear import of the spliceosomal snRNPs U1, U2, U4 and U5, is dependent on the presence of a complex nuclear localization signal (NLS). The latter is composed of the 5′‐2,2,7‐terminal trimethylguanosine (m3G) cap structure of the U snRNA and the Sm core domain. Here, we describe the isolation and cDNA cloning of a 45 kDa protein, termed snurportin1, which interacts specifically with m3G‐cap but not m7G‐cap structures. Snurportin1 enhances the m3G‐capdependent nuclear import of U snRNPs in both Xenopus laevis oocytes and digitonin‐permeabilized HeLa cells, demonstrating that it functions as an snRNP‐specific nuclear import receptor. Interestingly, solely the m3G‐cap and not the Sm core NLS appears to be recognized by snurportin1, indicating that at least two distinct import receptors interact with the complex snRNP NLS. Snurportin1 represents a novel nuclear import receptor which contains an N‐terminal importin β binding (IBB) domain, essential for function, and a C‐terminal m3G‐cap‐binding region with no structural similarity to the arm repeat domain of importin α.

[1]  R. Wallace,et al.  Protein incorporation by isolated amphibian oocytes III. Optimum incubation conditions , 1973 .

[2]  M. Fornerod,et al.  The human homologue of yeast CRM1 is in a dynamic subcomplex with CAN/Nup214 and a novel nuclear pore component Nup88 , 1997, The EMBO journal.

[3]  I. Mattaj Cap trimethylation of U snRNA is cytoplasmic and dependent on U snRNP protein binding , 1986, Cell.

[4]  S. Riva,et al.  Nucleo-cytoplasmic distribution of human hnRNP proteins: a search for the targeting domains in hnRNP A1. , 1995, Journal of cell science.

[5]  A. Gingras,et al.  The mRNA 5' cap-binding protein eIF4E and control of cell growth. , 1998, Current opinion in cell biology.

[6]  Elena Smirnova,et al.  Yrb4p, a yeast Ran–GTP‐binding protein involved in import of ribosomal protein L25 into the nucleus , 1997, The EMBO journal.

[7]  T. Ishida,et al.  Specific ring stacking interaction on the tryptophan-7-methylguanine system: comparative crystallographic studies of indole derivatives-7-methylguanine base, nucleoside, and nucleotide complexes , 1988 .

[8]  D. Goldfarb,et al.  Microinjected U snRNAs are imported to oocyte nuclei via the nuclear pore complex by three distinguishable targeting pathways , 1992, The Journal of cell biology.

[9]  G. Blobel,et al.  Previously identified protein of uncertain function is karyopherin alpha and together with karyopherin beta docks import substrate at nuclear pore complexes. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[10]  E. Izaurralde,et al.  Transport of macromolecules between the nucleus and the cytoplasm. , 1998, RNA.

[11]  A. Lamond,et al.  The conserved amino‐terminal domain of hSRP1 alpha is essential for nuclear protein import. , 1996, The EMBO journal.

[12]  C. Will,et al.  Protein functions in pre-mRNA splicing. , 1997, Current opinion in cell biology.

[13]  M. Sekine,et al.  Chemical Synthesis of a 5'-Terminal TMG-Capped Triribonucleotide m(3)(2,2,7)G(5)(')pppAmpUmpA of U1 RNA. , 1996, The Journal of organic chemistry.

[14]  D. Goldfarb,et al.  Multiple pathways in nuclear transport: the import of U2 snRNP occurs by a novel kinetic pathway , 1991, The Journal of cell biology.

[15]  F. Bischoff,et al.  The thermolability of nuclear protein import in tsBN2 cells is suppressed by microinjected Ran-GTP or Ran-GDP, but not by RanQ69L or RanT24N. , 1996, Journal of cell science.

[16]  C. McGuigan,et al.  Domains of U4 and U6 snRNAs required for snRNP assembly and splicing complementation in Xenopus oocytes. , 1990, The EMBO journal.

[17]  A. Lamond,et al.  Identification of hSRP1 alpha as a functional receptor for nuclear localization sequences. , 1995, Science.

[18]  Christina A. Cuomo,et al.  Rch1, a protein that specifically interacts with the RAG-1 recombination-activating protein. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[19]  G. Blobel,et al.  Identification of a protein complex that is required for nuclear protein import and mediates docking of import substrate to distinct nucleoporins. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[20]  R. Lührmann,et al.  Nuclear transport of U1 snRNP in somatic cells: differences in signal requirement compared with Xenopus laevis oocytes , 1994, The Journal of cell biology.

[21]  G. Blobel,et al.  Kap104p: A Karyopherin Involved in the Nuclear Transport of Messenger RNA Binding Proteins , 1996, Science.

[22]  E. Hartmann,et al.  Distinct functions for the two importin subunits in nuclear protein import , 1995, Nature.

[23]  R. Lührmann,et al.  In vitro nuclear import of snRNPs: cytosolic factors mediate m3G‐cap dependence of U1 and U2 snRNP transport. , 1994, The EMBO journal.

[24]  R. Laskey,et al.  Nuclear targeting sequences--a consensus? , 1991, Trends in biochemical sciences.

[25]  R. Wallace,et al.  Protein incorporation by isolated amphibian oocytes. V. Specificity for vitellogenin incorporation , 1976, The Journal of cell biology.

[26]  F. Quiocho,et al.  Specific protein recognition of an mRNA cap through its alkylated base , 1997, Nature Structural Biology.

[27]  G. Dreyfuss,et al.  Transportin: nuclear transport receptor of a novel nuclear protein import pathway. , 1996, Experimental cell research.

[28]  Imamoto Naoko,et al.  The nuclear pore-targeting complex binds to nuclear pores after association with a karyophile. , 1995 .

[29]  U. Kutay,et al.  The asymmetric distribution of the constituents of the Ran system is essential for transport into and out of the nucleus , 1997, The EMBO journal.

[30]  R. Lührmann,et al.  Diversity in the signals required for nuclear accumulation of U snRNPs and variety in the pathways of nuclear transport , 1991, The Journal of cell biology.

[31]  B. Cullen,et al.  Nuclear import of hnRNP A 1 is mediated by a novel cellular cofactor related to karyopherin-β , 1997 .

[32]  G. Dreyfuss,et al.  A nuclear export signal in hnRNP A1: A signal-mediated, temperature-dependent nuclear protein export pathway , 1995, Cell.

[33]  R. Roeder,et al.  Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. , 1983, Nucleic acids research.

[34]  E. Hartmann,et al.  A 41 amino acid motif in importin-a confers binding to importin-, and hence transit into the nucleus , 2022 .

[35]  R. Lührmann,et al.  Evidence for three distinct D proteins, which react differentially with anti-Sm autoantibodies, in the cores of the major snRNPs U1, U2, U4/U6 and U5. , 1990, Nucleic acids research.

[36]  R. Lührmann,et al.  m3G cap hypermethylation of U1 small nuclear ribonucleoprotein (snRNP) in vitro: evidence that the U1 small nuclear RNA-(guanosine-N2)-methyltransferase is a non-snRNP cytoplasmic protein that requires a binding site on the Sm core domain , 1994, Molecular and cellular biology.

[37]  E. Hartmann,et al.  A 41 amino acid motif in importin‐alpha confers binding to importin‐beta and hence transit into the nucleus. , 1996, The EMBO journal.

[38]  R. Lührmann,et al.  The snRNP core assembly pathway: identification of stable core protein heteromeric complexes and an snRNP subcore particle in vitro. , 1996, The EMBO journal.

[39]  R. Lührmann,et al.  A monoclonal antibody against 2,2,7-trimethylguanosine that reacts with intact, class U, small nuclear ribonucleoproteins as well as with 7-methylguanosine-capped RNAs. , 1987, European journal of biochemistry.

[40]  E. Robertis,et al.  Nuclear segregation of U2 snRNA requires binding of specific snRNP proteins , 1985, Cell.

[41]  E. Darżynkiewicz,et al.  The trimethylguanosine cap structure of U1 snRNA is a component of a bipartite nuclear targeting signal , 1990, Cell.

[42]  G. Dreyfuss,et al.  A Role for the M9 Transport Signal of hnRNP A1 in mRNA Nuclear Export , 1997, The Journal of cell biology.

[43]  M. Powers,et al.  The Vertebrate GLFG Nucleoporin, Nup98, Is an Essential Component of Multiple RNA Export Pathways , 1997, The Journal of cell biology.

[44]  F. Bischoff,et al.  Export of Importin α from the Nucleus Is Mediated by a Specific Nuclear Transport Factor , 1997, Cell.

[45]  G. Dreyfuss,et al.  The K nuclear shuttling domain: a novel signal for nuclear import and nuclear export in the hnRNP K protein , 1997, The EMBO journal.

[46]  G. Blobel,et al.  A Distinct Nuclear Import Pathway Used by Ribosomal Proteins , 1997, Cell.

[47]  S. Adam,et al.  Sequence and characterization of cytoplasmic nuclear protein import factor p97 , 1995, The Journal of cell biology.

[48]  M. Sekine,et al.  Synthesis of N2, N2, 7-trimethylguanosine cap derivatives. , 1989, Nucleic acids research.

[49]  M. Sekine,et al.  Nucleo‐cytoplasmic transport of U snRNPs: definition of a nuclear location signal in the Sm core domain that binds a transport receptor independently of the m3G cap. , 1993, The EMBO journal.

[50]  B. Cullen,et al.  Nuclear import of hnRNP A1 is mediated by a novel cellular cofactor related to karyopherin-beta. , 1997, Journal of cell science.

[51]  F. Bischoff,et al.  In vitro and in vivo evidence that protein and U1 snRNP nuclear import in somatic cells differ in their requirement for GTP-hydrolysis, Ran/TC4 and RCC1. , 1996, Nucleic acids research.

[52]  R. Wallace,et al.  Protein incorporation by isolated amphibian oocytes—VI. Comparison of autologous and xenogeneic vitellogenins☆ , 1980 .

[53]  G. Dreyfuss,et al.  A nuclear localization domain in the hnRNP A1 protein , 1995, The Journal of cell biology.

[54]  P. Limbach,et al.  Summary: the modified nucleosides of RNA. , 1994, Nucleic acids research.

[55]  G. Dreyfuss,et al.  A Novel Receptor-Mediated Nuclear Protein Import Pathway , 1996, Cell.

[56]  B. Paschal,et al.  Identification of NTF2, a cytosolic factor for nuclear import that interacts with nuclear pore complex protein p62 , 1995, The Journal of cell biology.

[57]  P. Bork,et al.  A Novel Class of RanGTP Binding Proteins , 1997, The Journal of cell biology.

[58]  J. Dahlberg,et al.  Nucleocytoplasmic transport and processing of small nuclear RNA precursors. , 1990, Molecular and Cellular Biology.

[59]  Deutsches Krebsforschungszentrum,et al.  Nucleocytoplasmic Transport , 1986, Springer Berlin Heidelberg.

[60]  R. Kraft,et al.  Two different subunits of importin cooperate to recognize nuclear localization signals and bind them to the nuclear envelope , 1995, Current Biology.

[61]  M. Nomura,et al.  Cloning and characterization of SRP1, a suppressor of temperature-sensitive RNA polymerase I mutations, in Saccharomyces cerevisiae , 1992, Molecular and cellular biology.

[62]  R. Lührmann,et al.  Purification of small nuclear ribonucleoprotein particles with antibodies against modified nucleosides of small nuclear RNAs. , 1990, Methods in enzymology.

[63]  S. Adam,et al.  Nuclear protein import in permeabilized mammalian cells requires soluble cytoplasmic factors , 1990, The Journal of cell biology.

[64]  F. Melchior,et al.  Inhibition of nuclear protein import by nonhydrolyzable analogues of GTP and identification of the small GTPase Ran/TC4 as an essential transport factor [published erratum appears in J Cell Biol 1994 Jan;124(1-2):217] , 1993, The Journal of cell biology.

[65]  G. Blobel,et al.  The GTP-binding protein Ran/TC4 is required for protein import into the nucleus , 1993, Nature.

[66]  B. Hames,et al.  RNA processing : a practical approach , 1994 .

[67]  N. Imamoto,et al.  The nuclear pore‐targeting complex binds to nuclear pores after association with a karyophile , 1995, FEBS letters.

[68]  E. Hartmann,et al.  Isolation of a protein that is essential for the first step of nuclear protein import , 1994, Cell.

[69]  G. Blobel,et al.  Purification of a Ran-interacting protein that is required for protein import into the nucleus. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[70]  D. Baltimore,et al.  RAG-1 interacts with the repeated amino acid motif of the human homologue of the yeast protein SRP1. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[71]  R. Lührmann,et al.  An essential signaling role for the m3G cap in the transport of U1 snRNP to the nucleus. , 1990, Science.

[72]  C. Dingwall,et al.  RAN/TC4 mutants identify a common requirement for snRNP and protein import into the nucleus , 1996, The Journal of cell biology.

[73]  A. Gingras,et al.  Cocrystal Structure of the Messenger RNA 5′ Cap-Binding Protein (eIF4E) Bound to 7-methyl-GDP , 1997, Cell.

[74]  M. Hetzer,et al.  Nuclear import of U snRNPs requires importin β , 1997 .

[75]  Erich A. Nigg,et al.  Nucleocytoplasmic transport: signals, mechanisms and regulation , 1997, Nature.

[76]  G. Blobel,et al.  The binding site of karyopherin alpha for karyopherin beta overlaps with a nuclear localization sequence. , 1996, Proceedings of the National Academy of Sciences of the United States of America.