Bioinformatics TrichOME : A Comparative Omics Database for Plant Trichomes 1

Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma 73401 (X.D., D.S.Y., Y.T., L.W.S., R.A.D., P.X.Z.); Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China (G.W.); Nestlé R&D Center Tours, Plant Science and Technology, 37390 Notre-Dame D’Oé, France (P.B.); and Department of Plant Biology, University of Minnesota, St. Paul, Minnesota 55108 (M.D.M.)

[1]  T. Wada,et al.  The Trihelix Transcription Factor GTL1 Regulates Ploidy-Dependent Cell Growth in the Arabidopsis Trichome[W][OA] , 2009, The Plant Cell Online.

[2]  Anthony L. Schilmiller,et al.  Monoterpenes in the glandular trichomes of tomato are synthesized from a neryl diphosphate precursor rather than geranyl diphosphate , 2009, Proceedings of the National Academy of Sciences.

[3]  R. Dixon,et al.  Transcriptome Analysis of Arabidopsis Wild-Type and gl3–sst sim Trichomes Identifies Four Additional Genes Required for Trichome Development , 2009, Molecular plant.

[4]  Ibrahim Emam,et al.  ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression , 2008, Nucleic Acids Res..

[5]  R. Dixon,et al.  Divergent Regulation of Terpenoid Metabolism in the Trichomes of Wild and Cultivated Tomato Species1[W][OA] , 2008, Plant Physiology.

[6]  P. Arsenault,et al.  Recent advances in artemisinin production through heterologous expression. , 2008, Current medicinal chemistry.

[7]  Robert D. Finn,et al.  InterPro: the integrative protein signature database , 2008, Nucleic Acids Res..

[8]  T. Margaritis,et al.  Transcriptome analysis approaches for the isolation of trichome-specific genes from the medicinal plant Cistus creticus subsp. creticus , 2008, Plant Molecular Biology.

[9]  A. Schnittger,et al.  Transcriptional Profiling of Mature Arabidopsis Trichomes Reveals That NOECK Encodes the MIXTA-Like Transcriptional Regulator MYB1061[C][W][OA] , 2008, Plant Physiology.

[10]  R. Dixon,et al.  Terpene Biosynthesis in Glandular Trichomes of Hop12[W][OA] , 2008, Plant Physiology.

[11]  G. Weiller,et al.  A gene expression atlas of the model legume Medicago truncatula. , 2008, The Plant journal : for cell and molecular biology.

[12]  Yansheng Zhang,et al.  The Molecular Cloning of Artemisinic Aldehyde Δ11(13) Reductase and Its Role in Glandular Trichome-dependent Biosynthesis of Artemisinin in Artemisia annua* , 2008, Journal of Biological Chemistry.

[13]  Anthony L. Schilmiller,et al.  Harnessing plant trichome biochemistry for the production of useful compounds. , 2008, The Plant journal : for cell and molecular biology.

[14]  D. Gang,et al.  A systems biology investigation of the MEP/terpenoid and shikimate/phenylpropanoid pathways points to multiple levels of metabolic control in sweet basil glandular trichomes. , 2008, The Plant journal : for cell and molecular biology.

[15]  J. F. Stevens,et al.  EST Analysis of Hop Glandular Trichomes Identifies an O-Methyltransferase That Catalyzes the Biosynthesis of Xanthohumol[W][OA] , 2008, The Plant Cell Online.

[16]  Yoshihiro Yamanishi,et al.  KEGG for linking genomes to life and the environment , 2007, Nucleic Acids Res..

[17]  Xin Chen,et al.  PlantTFDB: a comprehensive plant transcription factor database , 2007, Nucleic Acids Res..

[18]  I. Dry,et al.  Induction of a grapevine germin-like protein (VvGLP3) gene is closely linked to the site of Erysiphe necator infection: a possible role in defense? , 2007, Molecular plant-microbe interactions : MPMI.

[19]  Nigel W. Hardy,et al.  The Metabolomics Standards Initiative , 2007, Nature Biotechnology.

[20]  Lloyd W. Sumner,et al.  MedicCyc: a biochemical pathway database for Medicago truncatula , 2007, Bioinform..

[21]  Corey D Broeckling,et al.  MET-IDEA: data extraction tool for mass spectrometry-based metabolomics. , 2006, Analytical chemistry.

[22]  P. Covello,et al.  Artemisia annua L. (Asteraceae) trichome‐specific cDNAs reveal CYP71AV1, a cytochrome P450 with a key role in the biosynthesis of the antimalarial sesquiterpene lactone artemisinin , 2006, FEBS letters.

[23]  I. Baldwin,et al.  Silencing of a Germin-Like Gene in Nicotiana attenuata Improves Performance of Native Herbivores1[W] , 2006, Plant Physiology.

[24]  Milton H. Saier,et al.  TCDB: the Transporter Classification Database for membrane transport protein analyses and information , 2005, Nucleic Acids Res..

[25]  Stefan R. Henz,et al.  A gene expression map of Arabidopsis thaliana development , 2005, Nature Genetics.

[26]  J. Ohlrogge,et al.  Metabolic, Genomic, and Biochemical Analyses of Glandular Trichomes from the Wild Tomato Species Lycopersicon hirsutum Identify a Key Enzyme in the Biosynthesis of Methylketonesw⃞ , 2005, The Plant Cell Online.

[27]  R. Dixon,et al.  Transcriptome analysis of alfalfa glandular trichomes , 2005, Planta.

[28]  C. Ranger,et al.  Mass spectral characterization of fatty acid amides from alfalfa trichomes and their deterrence against the potato leafhopper. , 2005, Phytochemistry.

[29]  John Quackenbush,et al.  The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes , 2004, Nucleic Acids Res..

[30]  M. D. Marks,et al.  Comparison of TRY and the closely related At1g01380 gene in controlling Arabidopsis trichome patterning. , 2004, The Plant journal : for cell and molecular biology.

[31]  Naser A. Arikat,et al.  Micropropagation and accumulation of essential oils in wild sage (Salvia fruticosa Mill.) , 2004 .

[32]  E. Pichersky,et al.  Characterization of Geraniol Synthase from the Peltate Glands of Sweet Basil1 , 2004, Plant Physiology.

[33]  S. Rhee,et al.  AraCyc: A Biochemical Pathway Database for Arabidopsis1 , 2003, Plant Physiology.

[34]  T. Speed,et al.  Summaries of Affymetrix GeneChip probe level data. , 2003, Nucleic acids research.

[35]  R. Dixon,et al.  A putative lipid transfer protein involved in systemic resistance signalling in Arabidopsis , 2002, Nature.

[36]  R. Croteau,et al.  Strategies for transgenic manipulation of monoterpene biosynthesis in plants. , 2002, Trends in plant science.

[37]  D. Smyth,et al.  TRANSPARENT TESTA GLABRA2, a Trichome and Seed Coat Development Gene of Arabidopsis, Encodes a WRKY Transcription Factor Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.001404. , 2002, The Plant Cell Online.

[38]  J. Noel,et al.  Characterization of phenylpropene O-methyltransferases from sweet basil: facile change of substrate specificity and convergent evolution within a plant O-methyltransferase family. , 2002, The Plant cell.

[39]  Jason E. Stewart,et al.  Minimum information about a microarray experiment (MIAME)—toward standards for microarray data , 2001, Nature Genetics.

[40]  C. Ranger,et al.  Glandular Morphology from a Perennial Alfalfa Clone Resistant to the Potato Leafhopper , 2001 .

[41]  C. Li,et al.  Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[42]  D. Stekel,et al.  The comparison of gene expression from multiple cDNA libraries. , 2000, Genome research.

[43]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[44]  B. M. Lange,et al.  Probing essential oil biosynthesis and secretion by functional evaluation of expressed sequence tags from mint glandular trichomes. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[45]  G. Laue,et al.  Fast track to the trichome: induction of N-acyl nornicotines precedes nicotine induction in Nicotiana repanda , 2000, Planta.

[46]  J. F. Stevens,et al.  Chemistry and biology of hop flavonoids , 1998 .

[47]  P Green,et al.  Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.

[48]  A. Peter,et al.  Plant glandular trichomes , 1998 .

[49]  J. Kader Lipid-transfer proteins: a puzzling family of plant proteins , 1997 .

[50]  R. Dixon,et al.  Enhanced Protection Against Fungal Attack by Constitutive Co–expression of Chitinase and Glucanase Genes in Transgenic Tobacco , 1994, Bio/Technology.

[51]  Y. Lin,et al.  Rapid and Simple Method for Estimation of Sugar Esters , 1994 .

[52]  K. Feldmann,et al.  The GLABRA2 gene encodes a homeo domain protein required for normal trichome development in Arabidopsis. , 1994, Genes & development.

[53]  S. Duke,et al.  Localization of Artemisinin and Artemisitene in Foliar Tissues of Glanded and Glandless Biotypes of Artemisia annua L. , 1994, International Journal of Plant Sciences.

[54]  M. Boguski,et al.  dbEST — database for “expressed sequence tags” , 1993, Nature Genetics.

[55]  S. Duke,et al.  Development and Fine Structure of the Glandular Trichomes of Artemisia annua L. , 1993, International Journal of Plant Sciences.

[56]  J. Gershenzon,et al.  Evidence for an essential histidine residue in 4S-limonene synthase and other terpene cyclases. , 1992, Archives of biochemistry and biophysics.

[57]  J. Gershenzon,et al.  Morphology and monoterpene biosynthetic capabilities of secretory cell clusters isolated from glandular trichomes of peppermint (Mentha piperita L.) , 1992, Planta.

[58]  J. Gershenzon,et al.  Purification of 4S-limonene synthase, a monoterpene cyclase from the glandular trichomes of peppermint (Mentha x piperita) and spearmint (Mentha spicata). , 1992, The Journal of biological chemistry.

[59]  G. Wagner Secreting glandular trichomes: more than just hairs. , 1991, Plant physiology.

[60]  M. Mutschler,et al.  Aphid deterrence by glucose esters in glandular trichome exudate of the wild tomato,Lycopersicon pennellii , 1989, Journal of Chemical Ecology.

[61]  T. Boller,et al.  Antifungal Hydrolases in Pea Tissue : II. Inhibition of Fungal Growth by Combinations of Chitinase and beta-1,3-Glucanase. , 1988, Plant physiology.

[62]  M. Oliveira,et al.  Glandular trichomes of Humulus lupulus var. Brewer's Gold: Ontogeny and histochemical characterization of the secretion , 1988 .

[63]  U. Pfitzner,et al.  Pathogenesis-related proteins in plants , 1999 .

[64]  D. Lipman,et al.  Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[65]  C. Lemke,et al.  Inheritance of Glandular Trichomes in Crosses between Lycopersicon esculentum and Lycopersicon pennellii , 1984, Journal of the American Society for Horticultural Science.

[66]  C. P. Akers,et al.  Ultrastructure of glandular trichomes of leaves of Nicotiana tabacum L., cv. Xanthi , 1978 .

[67]  A. Reeves TOMATO TRICHOMES AND MUTATIONS AFFECTING THEIR DEVELOPMENT , 1977 .

[68]  R. Dixon,et al.  Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism. , 2005, Journal of experimental botany.

[69]  G. Wagner,et al.  New approaches for studying and exploiting an old protuberance, the plant trichome. , 2004, Annals of botany.

[70]  G. Wagner,et al.  trichome-specific promoter from Nicotiana tabacum L. , 2002 .

[71]  P. Gülz,et al.  Leaf trichomes in the genus Cistus , 1996 .

[72]  E. Werker,et al.  Glandular hairs and essential oil in developing leaves of Ocimum basilicum L. (Lamiaceae) , 1993 .

[73]  A. Mccomb,et al.  Plant resins—their formation, secretion and possible functions , 1979 .