The -omics Era- Toward a Systems-Level Understanding of Streptomyces
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Jianying Gu | Yi-Ling Du | Yufeng Wang | Yufeng Wang | Zhan Zhou | J. Gu | Yong-Quan Li | Yi‐Ling Du | Yong-Quan Li | Zhan Zhou | Jianying Gu | Yi-Ling Du
[1] L. Deterding,et al. Capillary liquid chromatography/mass spectrometry , 1994 .
[2] Kristof Vrancken,et al. Secretory production of recombinant proteins by Streptomyces. , 2009, Future microbiology.
[3] F Wright,et al. Codon usage in the G+C-rich Streptomyces genome. , 1992, Gene.
[4] S. Horinouchi,et al. Signalling early developmental events in two highly diverged Streptomyces species , 2003, Molecular microbiology.
[5] Ralph Kirby,et al. Once the circle has been broken: dynamics and evolution of Streptomyces chromosomes. , 2002, Trends in genetics : TIG.
[6] rag genes: novel components of the RamR regulon that trigger morphological differentiation in Streptomyces coelicolor , 2006, Molecular microbiology.
[7] H. B. Woodruff,et al. Bacteriostatic and Bactericidal Substances Produced by a Soil Actinomyces.∗ , 1940 .
[8] Yinhua Lu,et al. Transcriptomics analyses reveal global roles of the regulator AveI in Streptomyces avermitilis. , 2009, FEMS microbiology letters.
[9] P. Hoskisson. Streptomyces in Nature and Medicine: the Antibiotic Makers , 2008 .
[10] C. Kao,et al. A master regulator σB governs osmotic and oxidative response as well as differentiation via a network of sigma factors in Streptomyces coelicolor , 2005, Molecular microbiology.
[11] Stanley N Cohen,et al. Putative TetR Family Transcriptional Regulator SCO1712 Encodes an Antibiotic Downregulator in Streptomyces coelicolor , 2010, Applied and Environmental Microbiology.
[12] Paola Lecca,et al. Network inference from time-dependent Omics data. , 2011, Methods in molecular biology.
[13] G. Bucca,et al. Negative feedback regulation of dnaK, clpB and lon expression by the DnaK chaperone machine in Streptomyces coelicolor, identified by transcriptome and in vivo DnaK‐depletion analysis , 2003, Molecular microbiology.
[14] M. Bibb,et al. Regulation of secondary metabolism in streptomycetes. , 2005, Current opinion in microbiology.
[15] K. Chater. A morphological and genetic mapping study of white colony mutants of Streptomyces coelicolor. , 1972, Journal of general microbiology.
[16] J. Volff,et al. Genetic instability of the Streptomyces chromosome , 1998, Molecular microbiology.
[17] Rainer Breitling,et al. Metabolomic Characterization of the Salt Stress Response in Streptomyces coelicolor , 2010, Applied and Environmental Microbiology.
[18] Yoshiyuki Sakaki,et al. Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis , 2003, Nature Biotechnology.
[19] M. Karas,et al. Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. , 1988, Analytical chemistry.
[20] Stanley N Cohen,et al. The chaplins: a family of hydrophobic cell-surface proteins involved in aerial mycelium formation in Streptomyces coelicolor. , 2003, Genes & development.
[21] J. Imhoff,et al. Draft Genome Sequence of the Marine Streptomyces sp. Strain PP-C42, Isolated from the Baltic Sea , 2011, Journal of bacteriology.
[22] S. Cohen,et al. Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in Streptomyces coelicolor using DNA microarrays. , 2001, Genes & development.
[23] Rainer Breitling,et al. Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor , 2010, BMC Genomics.
[24] J. Anné,et al. The importance of the twin-arginine translocation pathway for bacterial virulence. , 2008, Trends in microbiology.
[25] Tracy Palmer,et al. The complex extracellular biology of Streptomyces. , 2010, FEMS microbiology reviews.
[26] James R. Cole,et al. Part 10 - The Bacteria: Phylum Actinobacteria, Class "Actinobacteria" , 2007 .
[27] M. Nei,et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.
[28] Klas Flärdh,et al. Streptomyces morphogenetics: dissecting differentiation in a filamentous bacterium , 2009, Nature Reviews Microbiology.
[29] M. Bibb,et al. The global role of ppGpp synthesis in morphological differentiation and antibiotic production in Streptomyces coelicolor A3(2) , 2007, Genome Biology.
[30] S. Osawa,et al. The guanine and cytosine content of genomic DNA and bacterial evolution. , 1987, Proceedings of the National Academy of Sciences of the United States of America.
[31] M. Bibb,et al. Analysis of the phosphoproteome of the multicellular bacterium Streptomyces coelicolor A3(2) by protein/peptide fractionation, phosphopeptide enrichment and high‐accuracy mass spectrometry , 2010, Proteomics.
[32] M. Bibb,et al. A rare leucine codon in adpA is implicated in the morphological defect of bldA mutants of Streptomyces coelicolor , 2003, Molecular microbiology.
[33] Sheng‐Chung Lee,et al. The terminal proteins of linear Streptomyces chromosomes and plasmids: a novel class of replication priming proteins , 2002, Molecular microbiology.
[34] B. Berks,et al. Pathfinders and trailblazers: a prokaryotic targeting system for transport of folded proteins. , 2006, FEMS microbiology letters.
[35] Bo Zhang,et al. Genome Sequence of the Milbemycin-Producing Bacterium Streptomycesbingchenggensis , 2010, Journal of bacteriology.
[36] H. M. Sobell. Actinomycin and DNA transcription. , 1985, Proceedings of the National Academy of Sciences of the United States of America.
[37] G. Suen,et al. Genome Sequence of Streptomyces griseus Strain XylebKG-1, an Ambrosia Beetle-Associated Actinomycete , 2011, Journal of bacteriology.
[38] R. Graham,et al. Microbial proteomics: a mass spectrometry primer for biologists , 2007, Microbial cell factories.
[39] K. Chater,et al. Changes in the Extracellular Proteome Caused by the Absence of the bldA Gene Product, a Developmentally Significant tRNA, Reveal a New Target for the Pleiotropic Regulator AdpA in Streptomyces coelicolor , 2005, Journal of bacteriology.
[40] Stephen J Freeland,et al. A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes , 2001, Genome Biology.
[41] Stanley N Cohen,et al. Genome plasticity in Streptomyces: identification of 1 Mb TIRs in the S. coelicolor A3(2) chromosome , 2004, Molecular microbiology.
[42] H. Okada,et al. The structure of inducing factors for virginiamycin production in Streptomyces virginiae. , 1987, The Journal of antibiotics.
[43] Yong-Quan Li,et al. Identification of a novel Streptomyces chattanoogensis L10 and enhancing its natamycin production by overexpressing positive regulator ScnRII , 2009, The Journal of Microbiology.
[44] K. Chater,et al. TTA codons in some genes prevent their expression in a class of developmental, antibiotic-negative, Streptomyces mutants. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[45] N. Talbot,et al. Building filaments in the air: aerial morphogenesis in bacteria and fungi. , 2004, Current opinion in microbiology.
[46] Gerd Mayer,et al. Streptomycin biosynthesis and its regulation in Streptomycetes. , 1992, Gene.
[47] D. Hopwood,et al. Soil to genomics: the Streptomyces chromosome. , 2006, Annual review of genetics.
[48] C. Huang,et al. The homologous terminal sequence of the Streptomyces lividans chromosome and SLP2 plasmid. , 2000, Microbiology.
[49] Sebastian Shterental,et al. Secreted-Protein Response to σU Activity in Streptomyces coelicolor , 2007 .
[50] O. Jensen,et al. Quantitative proteome analysis of Streptomyces coelicolor Nonsporulating liquid cultures demonstrates a complex differentiation process comparable to that occurring in sporulating solid cultures. , 2010, Journal of proteome research.
[51] George Karypis,et al. Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor , 2007, Nucleic acids research.
[52] Shengyue Wang,et al. Draft Genome Sequence of the Marine Bacterium Streptomyces griseoaurantiacus M045, Which Produces Novel Manumycin-Type Antibiotics with a pABA Core Component , 2011, Journal of bacteriology.
[53] M. Bibb,et al. Genome-wide analysis of the role of GlnR in Streptomyces venezuelae provides new insights into global nitrogen regulation in actinomycetes , 2011, BMC Genomics.
[54] Radhey S. Gupta,et al. Signature proteins that are distinctive characteristics of Actinobacteria and their subgroups , 2006, Antonie van Leeuwenhoek.
[55] A. Simao-Beaunoir,et al. Genetic and physiological determinants of Streptomyces scabies pathogenicity. , 2009, Molecular plant pathology.
[56] Lisa C. Crossman,et al. Draft Genome Sequence of Streptomyces Strain S4, a Symbiont of the Leaf-Cutting Ant Acromyrmex octospinosus , 2011, Journal of bacteriology.
[57] Y. Tsay,et al. The telomere system of the Streptomyces linear plasmid SCP1 represents a novel class , 2007, Molecular microbiology.
[58] Martin A. Nowak,et al. Inferring Cellular Networks Using Probabilistic Graphical Models , 2004 .
[59] M. Bibb,et al. Primary and secondary metabolism, and post‐translational protein modifications, as portrayed by proteomic analysis of Streptomyces coelicolor , 2002, Molecular microbiology.
[60] Eriko Takano,et al. A bacterial hormone (the SCB1) directly controls the expression of a pathway‐specific regulatory gene in the cryptic type I polyketide biosynthetic gene cluster of Streptomyces coelicolor , 2005, Molecular microbiology.
[61] J. Nielsen,et al. Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism. , 2005, Genome research.
[62] Kenneth G. Johnson,et al. Induction of Cellulolytic and Xylanolytic Enzyme Systems in Streptomyces spp , 1987, Applied and environmental microbiology.
[63] Kay Nieselt,et al. The dynamic architecture of the metabolic switch in Streptomyces coelicolor , 2010, BMC Genomics.
[64] J. Cullum,et al. Genetic instability in Streptomyces , 2006 .
[65] W. Piepersberg,et al. Genetics of streptomycin production in Streptomyces griseus: nucleotide sequence of five genes, strFGHIK, including a phosphatase gene , 1991, Molecular and General Genetics MGG.
[66] Sarika Mehra,et al. Genome-wide transcriptome analysis reveals that a pleiotropic antibiotic regulator, AfsS, modulates nutritional stress response in Streptomyces coelicolor A3(2) , 2008, BMC Genomics.
[67] N. Allenby,et al. Development and application of versatile high density microarrays for genome-wide analysis of Streptomyces coelicolor: characterization of the HspR regulon , 2009, Genome Biology.
[68] R. D. Tillotson,et al. A surface active protein involved in aerial hyphae formation in the filamentous fungus Schizophillum commune restores the capacity of a bald mutant of the filamentous bacterium Streptomyces coelicolor to erect aerial structures , 1998, Molecular microbiology.
[69] Jun Ishikawa,et al. Genome Sequence of the Streptomycin-Producing Microorganism Streptomyces griseus IFO 13350 , 2008, Journal of bacteriology.
[70] Johan A. Kers,et al. Evolution of plant pathogenicity in Streptomyces. , 2006, Annual review of phytopathology.
[71] Michael Hecker,et al. The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies , 2010, Molecular microbiology.
[72] T. Beppu,et al. Cross-interaction of anti-σH factor RshA with BldG, an anti-sigma factor antagonist in Streptomyces griseus. , 2011, FEMS microbiology letters.
[73] Zhan Zhou,et al. New approach to achieve high-level secretory expression of heterologous proteins by using Tat signal peptide. , 2009, Protein and peptide letters.
[74] G. Karypis,et al. Genome-wide inference of regulatory networks in Streptomyces coelicolor , 2010, BMC Genomics.
[75] T. Nyström,et al. ppGpp: a global regulator in Escherichia coli. , 2005, Trends in microbiology.
[76] S. Horinouchi,et al. Dynamic changes in the extracellular proteome caused by absence of a pleiotropic regulator AdpA in Streptomyces griseus , 2009, Molecular microbiology.
[77] Yoshiyuki Sakaki,et al. Genome sequence of an industrial microorganism Streptomyces avermitilis: Deducing the ability of producing secondary metabolites , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[78] N. Perna,et al. progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement , 2010, PloS one.
[79] C. Thompson,et al. A central regulator of morphological differentiation in the multicellular bacterium Streptomyces coelicolor , 2002, Molecular microbiology.
[80] Stanley N Cohen,et al. Recruitment of terminal protein to the ends of Streptomyces linear plasmids and chromosomes by a novel telomere-binding protein essential for linear DNA replication. , 2003, Genes & development.
[81] D. Buckley,et al. Widespread homologous recombination within and between Streptomyces species , 2010, The ISME Journal.
[82] M. Bibb,et al. The use of a rare codon specifically during development? , 1991, Molecular microbiology.
[83] T. Kieser. Practical streptomyces genetics , 2000 .
[84] P. Mackiewicz,et al. Streptomyces sudanensis sp. nov., a new pathogen isolated from patients with actinomycetoma , 2008, Antonie van Leeuwenhoek.
[85] Secreted-protein response to sigmaU activity in Streptomyces coelicolor. , 2008, Journal of bacteriology.
[86] Govind Chandra,et al. Genes essential for morphological development and antibiotic production in Streptomyces coelicolor are targets of BldD during vegetative growth , 2010, Molecular microbiology.
[87] Eung-Soo Kim,et al. Transcriptome Analysis of an Antibiotic Downregulator Mutant and Synergistic Actinorhodin Stimulation via Disruption of a Precursor Flux Regulator in Streptomyces coelicolor , 2011, Applied and Environmental Microbiology.
[88] Wenjun Zhang,et al. Regulation of Secondary Metabolism in Bacteria , 2009 .
[89] B. Veress,et al. The immunopathology of actinomycetoma lesions caused by Streptomyces somaliensis. , 2001, Transactions of the Royal Society of Tropical Medicine and Hygiene.
[90] Alice M. Yaxley. Study of the complete genome sequence of Streptomyces scabies (or scabiei) 87.22 , 2009 .
[91] B. Barrell,et al. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2) , 2002, Nature.
[92] Rosemary Loria,et al. What does it take to be a plant pathogen: genomic insights from Streptomyces species , 2010, Antonie van Leeuwenhoek.
[93] Purification and structural determination of SCB1, a gamma-butyrolactone that elicits antibiotic production in Streptomyces coelicolor A3(2). , 2000, The Journal of biological chemistry.
[94] Ralph Kirby,et al. Chromosome diversity and similarity within the Actinomycetales. , 2011, FEMS microbiology letters.
[95] M. Díaz,et al. Novel Two-Component Systems Implied in Antibiotic Production in Streptomyces coelicolor , 2011, PloS one.
[96] E V Koonin,et al. Lineage-specific gene expansions in bacterial and archaeal genomes. , 2001, Genome research.
[97] M. Fischbach,et al. Draft Genome Sequence of Streptomyces clavuligerus NRRL 3585, a Producer of Diverse Secondary Metabolites , 2010, Journal of bacteriology.
[98] Tracy Palmer,et al. The twin-arginine translocation pathway is a major route of protein export in Streptomyces coelicolor , 2006, Proceedings of the National Academy of Sciences.
[99] John R Yates,et al. Large-scale protein identification using mass spectrometry. , 2003, Biochimica et biophysica acta.
[100] T. Silhavy,et al. Periplasmic stress and ECF sigma factors. , 2001, Annual review of microbiology.
[101] R. Breitling,et al. The Sequence of a 1.8-Mb Bacterial Linear Plasmid Reveals a Rich Evolutionary Reservoir of Secondary Metabolic Pathways , 2010, Genome biology and evolution.
[102] D. Hopwood,et al. Forty years of genetics with Streptomyces: from in vivo through in vitro to in silico. , 1999, Microbiology.
[103] S. Günther,et al. Genome Sequence of Streptomyces sp. Strain Tü6071 , 2011, Journal of bacteriology.
[104] I. Rapoport,et al. [The A-factor, responsible for streptomycin biosynthesis by mutant strains of Actinomyces streptomycini]. , 1967, Doklady Akademii nauk SSSR.
[105] M. Bibb,et al. Purification and Structural Determination of SCB1, a γ-Butyrolactone That Elicits Antibiotic Production inStreptomyces coelicolor A3(2)* , 2000, The Journal of Biological Chemistry.