Construction of a human cell landscape at single-cell level
暂无分享,去创建一个
Dan Zhang | Yincong Zhou | Hailan Hu | He Huang | Yiqing Wu | Lijiang Fei | Haide Chen | Guoji Guo | Ziming Zhou | Chengxuan Yu | Mengmeng Jiang | Tingbo Liang | Jianghua Chen | Xueli Bai | Guoji Guo | T. Liang | X. Bai | Xiaoping Han | Renying Wang | Yincong Zhou | Lijiang Fei | Huiyu Sun | Shujing Lai | Ziming Zhou | Haide Chen | Fang Ye | Mengmeng Jiang | Yao Chen | He Huang | Ming Chen | Hailan Hu | Weilin Wang | Wenhao Ge | Jianghua Chen | Yi-qing Wu | Dan Zhang | Min Wang | Saiyong Zhu | R. Zhan | Yuchi Gao | Shujing Lai | Xiaoping Han | Qi Zhang | Lijun Zhu | Saiyong Zhu | Min Wang | Weilin Wang | Lijun Zhu | Huiyu Sun | Renying Wang | Yao Chen | Jingjing Wang | Huanna Tang | Wenhao Ge | Fang Ye | Junqing Wu | Yanyu Xiao | Xiaoning Jia | Tingyue Zhang | Xiaojie Ma | Rui Lin | Jianming Zhang | Renya Zhan | Changchun Wang | Ming Chen | Xiaojie Ma | Junqing Wu | Yanyu Xiao | Chengxuan Yu | Jingjing Wang | Tingyue Zhang | Yuchi Gao | Changchun Wang | Huanna Tang | Jianmin Zhang | Rui Lin | Xiaoning Jia | Qi Zhang | Yuchi Gao
[1] P. Kharchenko,et al. Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain , 2017, Nature Biotechnology.
[2] H. Binder,et al. Multilineage communication regulates human liver bud development from pluripotency , 2017, Nature.
[3] J. Junker,et al. Simultaneous lineage tracing and cell-type identification using CRISPR/Cas9-induced genetic scars , 2018, Nature Biotechnology.
[4] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[5] Guo-Cheng Yuan,et al. Revealing the Critical Regulators of Cell Identity in the Mouse Cell Atlas , 2018, bioRxiv.
[6] James T. Webber,et al. Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris , 2018, Nature.
[7] Geoffrey J Maher,et al. The adult human testis transcriptional cell atlas , 2018, Cell Research.
[8] F. Tang,et al. Single-Cell RNA Sequencing Analysis Reveals Sequential Cell Fate Transition during Human Spermatogenesis. , 2018, Cell stem cell.
[9] J. Aerts,et al. SCENIC: Single-cell regulatory network inference and clustering , 2017, Nature Methods.
[10] A. Regev,et al. Spatial reconstruction of single-cell gene expression , 2015, Nature Biotechnology.
[11] A. Tanay,et al. Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq , 2018, Cell.
[12] Tracy M. Yamawaki,et al. Evolution of pallium, hippocampus, and cortical cell types revealed by single-cell transcriptomics in reptiles , 2018, Science.
[13] Fabian J Theis,et al. Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics , 2018, Science.
[14] N. Neff,et al. Reconstructing lineage hierarchies of the distal lung epithelium using single cell RNA-seq , 2014, Nature.
[15] R. Sandberg,et al. Full-Length mRNA-Seq from single cell levels of RNA and individual circulating tumor cells , 2012, Nature Biotechnology.
[16] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[17] Lu Wen,et al. Tracing the temporal-spatial transcriptome landscapes of the human fetal digestive tract using single-cell RNA-sequencing , 2018, Nature Cell Biology.
[18] N. Hacohen,et al. Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors , 2017, Science.
[19] F. Hamey,et al. Heterogeneity of human lympho-myeloid progenitors at the single cell level , 2017, Nature Immunology.
[20] Evan Z. Macosko,et al. Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets , 2015, Cell.
[21] Marcel H. Schulz,et al. Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction , 2016, bioRxiv.
[22] Lars E. Borm,et al. Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells , 2016, Cell.
[23] Allan R. Jones,et al. Conserved cell types with divergent features in human versus mouse cortex , 2019, Nature.
[24] Mauro J. Muraro,et al. A Single-Cell Transcriptome Atlas of the Human Pancreas , 2016, Cell systems.
[25] Guo-Cheng Yuan,et al. Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing , 2018, Genome Biology.
[26] Peiyong Jiang,et al. Integrative single-cell and cell-free plasma RNA transcriptomics elucidates placental cellular dynamics , 2017, Proceedings of the National Academy of Sciences.
[27] J. Thomson,et al. Human embryonic stem cell-derived CD34+ cells: efficient production in the coculture with OP9 stromal cells and analysis of lymphohematopoietic potential. , 2005, Blood.
[28] Allon M. Klein,et al. A single cell atlas of the tracheal epithelium reveals the CFTR-rich pulmonary ionocyte , 2018, Nature.
[29] Allon M. Klein,et al. Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells , 2015, Cell.
[30] R. Stewart,et al. Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm , 2016, Genome Biology.
[31] Dominic Grün,et al. A Human Liver Cell Atlas reveals Heterogeneity and Epithelial Progenitors , 2019, Nature.
[32] S. Orkin,et al. Mapping the Mouse Cell Atlas by Microwell-Seq , 2018, Cell.
[33] Samuel L. Wolock,et al. A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure. , 2016, Cell systems.
[34] Madeline A. Lancaster,et al. Human cerebral organoids recapitulate gene expression programs of fetal neocortex development , 2015, Proceedings of the National Academy of Sciences.
[35] James D. Johnson,et al. Reversal of diabetes with insulin-producing cells derived in vitro from human pluripotent stem cells , 2014, Nature Biotechnology.
[36] Allon M. Klein,et al. Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo , 2018, Science.
[37] Catalin C. Barbacioru,et al. mRNA-Seq whole-transcriptome analysis of a single cell , 2009, Nature Methods.
[38] Principal Investigators,et al. Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris , 2018 .
[39] Rona S. Gertner,et al. Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells , 2013, Nature.
[40] A. Regev,et al. Scaling single-cell genomics from phenomenology to mechanism , 2017, Nature.
[41] A. Regev,et al. Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis , 2018, Science.
[42] Berthold Göttgens,et al. A single-cell molecular map of mouse gastrulation and early organogenesis , 2019, Nature.
[43] Mauro J. Muraro,et al. De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data , 2016, Cell stem cell.
[44] C. Myers,et al. Using networks to measure similarity between genes: association index selection , 2013, Nature Methods.
[45] M. Guo,et al. SLICE: determining cell differentiation and lineage based on single cell entropy , 2016, Nucleic acids research.
[46] Kay Elder,et al. Defining the three cell lineages of the human blastocyst by single-cell RNA-seq , 2015, Development.
[47] Roland Eils,et al. circlize implements and enhances circular visualization in R , 2014, Bioinform..
[48] Fabian J Theis,et al. SCANPY: large-scale single-cell gene expression data analysis , 2018, Genome Biology.
[49] M. Gerstein,et al. Unlocking the secrets of the genome , 2009, Nature.
[50] Omri Wurtzel,et al. Cell type transcriptome atlas for the planarian Schmidtea mediterranea , 2018, Science.
[51] Ruiqiang Li,et al. Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells , 2013, Nature Structural &Molecular Biology.
[52] Rong Li,et al. Single-Cell RNA-Seq Analysis Maps Development of Human Germline Cells and Gonadal Niche Interactions. , 2017, Cell stem cell.
[53] Fabian J Theis,et al. Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells , 2015, Nature Biotechnology.
[54] Sarah A. Teichmann,et al. Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors , 2018, Science.
[55] Andrew J. Hill,et al. The single cell transcriptional landscape of mammalian organogenesis , 2019, Nature.
[56] Jie Qiao,et al. A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex , 2018, Nature.
[57] Hans Clevers,et al. Intra-tumour diversification in colorectal cancer at the single-cell level , 2018, Nature.
[58] Tal Galili,et al. dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering , 2015, Bioinform..
[59] Fabian J Theis,et al. PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells , 2019, Genome Biology.
[60] Seema A. Khan,et al. Profiling human breast epithelial cells using single cell RNA sequencing identifies cell diversity , 2018, Nature Communications.
[61] L. Steinmetz,et al. Human haematopoietic stem cell lineage commitment is a continuous process , 2017, Nature Cell Biology.
[62] Kerstin B. Meyer,et al. Single-cell reconstruction of the early maternal–fetal interface in humans , 2018, Nature.
[63] Geoffrey J Maher,et al. Chromatin and Single-Cell RNA-Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development , 2017, Cell stem cell.
[64] Sara Ballouz,et al. Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor , 2018, Nature Communications.
[65] Andrew C. Adey,et al. Single-Cell Transcriptional Profiling of a Multicellular Organism , 2017 .
[66] Erik Sundström,et al. RNA velocity of single cells , 2018, Nature.
[67] D. M. Smith,et al. Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes , 2016, Cell metabolism.