Molecular dynamics simulations of polymers: Methods for optimal Fortran programming

The structure of the general classical trajectory FORTRAN code is discussed for use in molecular dynamics simulations of polymer processes. Substantial reductions in the number of mathematical operations in the code are achieved by using statement functions, modifying the ususal chain rule derivatives, applying appropriate vector identities, and using closure relationships among the required derivatives of the potential.

[1]  M. Levitt,et al.  Refinement of protein conformations using a macromolecular energy minimization procedure. , 1969, Journal of molecular biology.

[2]  Robert J. Hinde,et al.  First and second derivative matrix elements for the stretching, bending, and torsional energy , 1989 .

[3]  William G. Hoover,et al.  Nonequilibrium Molecular Dynamics , 1983 .

[4]  Richard H. Boyd,et al.  Method for Calculation of the Conformation of Minimum Potential‐Energy and Thermodynamic Functions of Molecules from Empirical Valence‐Force Potentials—Application to the Cyclophanes , 1968 .

[5]  F. W. Kellaway,et al.  Advanced Engineering Mathematics , 1969, The Mathematical Gazette.

[6]  Thomas A. Weber,et al.  Relaxation of a n‐octane fluid , 1979 .

[7]  Richard H. Boyd,et al.  The Conformational Analysis of Crankshaft Motions in Polyethylene , 1974 .

[8]  J. B. Drake,et al.  Molecular dynamics of a model polymer on a hypercube parallel computer , 1988, Comput. Chem..

[9]  R. H. Boyd,et al.  Prediction of polymer crystal structures and properties: a method utilizing simultaneous inter- and intramolecular energy minimization , 1988 .

[10]  Paul von Ragué Schleyer,et al.  Critical evaluation of molecular mechanics , 1973 .

[11]  S. L. Marple,et al.  Dispersion curves from short-time molecular dynamics simulations. 1. Diatomic chain results , 1988 .

[12]  Jerry Goodisman,et al.  Diatomic interaction potential theory , 1973 .

[13]  Thomas A. Weber,et al.  Simulation of n‐butane using a skeletal alkane model , 1978 .

[14]  Stephen Z. D. Cheng,et al.  Computer Simulation of the Melting Process in Linear Macromolecules , 1988 .

[15]  Søren Toxvaerd,et al.  Molecular dynamics of liquid butane , 1988 .

[16]  L. Shampine,et al.  Computer solution of ordinary differential equations : the initial value problem , 1975 .

[17]  Michael L. Klein COMPUTER SIMULATION STUDIES OF SOLIDS , 1985 .

[18]  D. Fincham,et al.  Recent advances in molecular-dynamics computer simulation , 1985 .

[19]  Rudolf Zbinden,et al.  Infrared spectroscopy of high polymers , 1964 .