Higher mutation rate helps to rescue genes from the elimination by selection.
暂无分享,去创建一个
Maria Kowalczuk | Joanna Banaszak | Stanislaw Cebrat | Dorota Mackiewicz | Malgorzata Dudkiewicz | Natalia Polak | Kamila Smolarczyk | Pawel Mackiewicz | S. Cebrat | M. Dudek | P. Mackiewicz | D. Mackiewicz | M. Kowalczuk | A. Nowicka | M. Dudkiewicz | N. Polak | Kamila Smolarczyk | J. Banaszak | Miroslaw R Dudek | Aleksandra Nowicka
[1] G. Paul,et al. Molecular Diversity and Evolution of blaTEM Genes Encoding β-Lactamases Resistant to Clavulanic Acid in Clinical E. coli , 1997, Journal of Molecular Evolution.
[2] Temple F. Smith,et al. Patterns of Genome Organization in Bacteria , 1998, Science.
[3] S. Cebrat,et al. High divergence rate of sequences located on different DNA strands in closely related bacterial genomes. , 2003, Journal of applied genetics.
[4] A. Danchin,et al. Universal replication biases in bacteria , 1999, Molecular microbiology.
[5] J O McInerney,et al. Replicational and transcriptional selection on codon usage in Borrelia burgdorferi. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[6] S. Karlin,et al. Dinucleotide relative abundance extremes: a genomic signature. , 1995, Trends in genetics : TIG.
[7] Kui Lin,et al. Strand Compositional Asymmetries of Nuclear DNA in Eukaryotes , 2003, Journal of Molecular Evolution.
[8] R D Appel,et al. A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server. , 1994, Trends in biochemical sciences.
[9] J. Lobry. Asymmetric substitution patterns in the two DNA strands of bacteria. , 1996, Molecular biology and evolution.
[10] Michael Y. Galperin,et al. The COG database: new developments in phylogenetic classification of proteins from complete genomes , 2001, Nucleic Acids Res..
[11] H. Ochman,et al. Strand asymmetries in DNA evolution. , 1997, Trends in genetics : TIG.
[12] Paweł Mackiewicz,et al. Mechanisms generating long-range correlation in nucleotide composition of the Borrelia burgdorferi genome , 1999 .
[13] S. Cebrat,et al. Asymmetry of nucleotide composition of prokaryotic chromosomes , 1999 .
[14] T. Tanaka,et al. Recent Progress in Self-Healable Hydrogel-Based Electroluminescent Devices: A Comprehensive Review , 2023, Gels.
[15] K. H. Wolfe,et al. Base Composition Skews, Replication Orientation, and Gene Orientation in 12 Prokaryote Genomes , 1998, Journal of Molecular Evolution.
[16] Jerry L. Slightom,et al. Base substitutions, length differences and DNA strand asymmetries in the human G γ and A γ fetal globin gene region , 1981, Cell.
[17] M. Wilkins,et al. Cross-species protein identification using amino acid composition, peptide mass fingerprinting, isoelectric point and molecular mass: a theoretical evaluation. , 1997, Journal of theoretical biology.
[18] Joël-Paul Grillasca,et al. SPAC: Identification of Polypeptides using Their Amino-acid Composition , 2000, Comput. Chem..
[19] U. Hobohm,et al. A sequence property approach to searching protein databases. , 1995, Journal of molecular biology.
[20] D. Hochstrasser,et al. From Proteins to Proteomes: Large Scale Protein Identification by Two-Dimensional Electrophoresis and Arnino Acid Analysis , 1996, Bio/Technology.
[21] E. Tillier,et al. Replication Orientation Affects the Rate and Direction of Bacterial Gene Evolution , 2000, Journal of Molecular Evolution.
[22] E V Koonin,et al. Gene order is not conserved in bacterial evolution. , 1996, Trends in genetics : TIG.
[23] A Bairoch,et al. Multiple parameter cross‐species protein identification using MultiIdent ‐ a world‐wide web accessible tool , 1998, Electrophoresis.
[24] S. Cebrat,et al. Evolution Rates of Genes on Leading and Lagging DNA Strands , 2001, Journal of Molecular Evolution.
[25] J. C. Shepherd. Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification. , 1981, Proceedings of the National Academy of Sciences of the United States of America.
[26] S. Karlin,et al. Strand compositional asymmetry in bacterial and large viral genomes. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[27] J. Lawrence. The Dynamic Bacterial Genome , 2005 .
[28] A Grigoriev,et al. Analyzing genomes with cumulative skew diagrams. , 1998, Nucleic acids research.
[29] S. Cebrat,et al. Asymmetry of coding versus noncoding strand in coding sequences of different genomes. , 1997, Microbial & comparative genomics.
[30] A. Galat,et al. Convergence of amino acid compositions of certain groups of proteins aids in their identification on two‐dimensional electrophoresis gels , 1997, Electrophoresis.
[31] S. Cebrat,et al. DNA asymmetry and the replicational mutational pressure. , 2001, Journal of applied genetics.
[32] Paweł Mackiewicz,et al. Rearrangements between differently replicating DNA strands in asymmetric bacterial genomes. , 2003, Acta microbiologica Polonica.
[33] C Sander,et al. Amino acid analysis and protein database compositional search as a rapid and inexpensive method to identify proteins. , 1994, Analytical biochemistry.
[34] A. Danchin,et al. Ongoing evolution of strand composition in bacterial genomes. , 2001, Molecular biology and evolution.
[35] R. Cedergren,et al. Natural selection versus primitive gene structure as determinant of codon usage. , 1986, European journal of biochemistry.
[36] T. Gojobori,et al. Dynamic Evolution of Genomes and the Concept of Genome Space , 1999, Annals of the New York Academy of Sciences.
[37] P. Argos,et al. Identification of proteins in sequence databases from amino acid composition data. , 1991, Analytical biochemistry.
[38] S. Cebrat,et al. How does replication-associated mutational pressure influence amino acid composition of proteins? , 1999, Genome research.
[39] S. Cebrat,et al. Is there replication-associated mutational pressure in the Saccharomyces cerevisiae genome? , 2000, Journal of theoretical biology.
[40] N. Sueoka,et al. Asymmetric directional mutation pressures in bacteria , 2002, Genome Biology.
[41] S. Salzberg,et al. Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi , 1997, Nature.
[42] Diarmaid Hughes,et al. Evaluating genome dynamics: the constraints on rearrangements within bacterial genomes , 2000, Genome Biology.
[43] A. Kolstø,et al. Dynamic bacterial genome organization , 1997, Molecular microbiology.
[44] P. Sharp,et al. Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases. , 1999, Nucleic acids research.
[45] E. Tillier,et al. The Contributions of Replication Orientation, Gene Direction, and Signal Sequences to Base-Composition Asymmetries in Bacterial Genomes , 2000, Journal of Molecular Evolution.
[46] J. Lobry,et al. Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms. , 1999, Gene.
[47] Maria Kowalczuk,et al. High correlation between the turnover of nucleotides under mutational pressure and the DNA composition , 2001, BMC Evolutionary Biology.
[48] M R Wilkins,et al. Cross‐species identification of proteins separated by two‐dimensional gel electrophoresis using matrix‐assisted laser desorption ionisation/time‐of‐flight mass spectrometry and amino acid composition , 1995, Electrophoresis.
[49] H. Mori,et al. Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes. , 1999, Molecular biology and evolution.