Symmetry-Based Model Reduction for Approximate Stochastic Analysis
暂无分享,去创建一个
François Lemaire | Cédric Lhoussaine | Cristian Versari | Kirill Batmanov | Céline Kuttler | F. Lemaire | K. Batmanov | Cédric Lhoussaine | Cristian Versari | C. Kuttler
[1] Pascal Hersen,et al. Towards Real-Time Control of Gene Expression: in silico Analysis* , 2011 .
[2] Eric H. Davidson,et al. Gene Regulatory Networks for Development: What They Are, How They Work, and What They Mean , 2006 .
[3] S. Orszag,et al. Moment expansions in spatial ecological models and moment closure through Gaussian approximation , 2000, Bulletin of mathematical biology.
[4] K Dietz,et al. Modelling patterns of parasite aggregation in natural populations: trichostrongylid nematode–ruminant interactions as a case study , 1995, Parasitology.
[5] J. Hespanha,et al. Stochastic models for chemically reacting systems using polynomial stochastic hybrid systems , 2005 .
[6] Bernhard O. Palsson,et al. A road map for the development of community systems (CoSy) biology , 2012, Nature Reviews Microbiology.
[7] Mudita Singhal,et al. COPASI - a COmplex PAthway SImulator , 2006, Bioinform..
[8] Ching Leang,et al. Direct Exchange of Electrons Within Aggregates of an Evolved Syntrophic Coculture of Anaerobic Bacteria , 2010, Science.
[9] Linda R Petzold,et al. Efficient step size selection for the tau-leaping simulation method. , 2006, The Journal of chemical physics.
[10] D. Gillespie. A General Method for Numerically Simulating the Stochastic Time Evolution of Coupled Chemical Reactions , 1976 .
[11] J. Gurdon,et al. A community effect in animal development , 1988, Nature.
[12] Cédric Lhoussaine,et al. Self-organized Patterning by Diffusible Factors: Roles of a Community Effect , 2012, Fundam. Informaticae.
[13] Chang Hyeong Lee,et al. A moment closure method for stochastic reaction networks. , 2009, The Journal of chemical physics.
[14] Jeffrey W. Smith,et al. Stochastic Gene Expression in a Single Cell , .
[15] Péter Érdi,et al. Mathematical Models of Chemical Reactions: Theory and Applications of Deterministic and Stochastic Models , 1989 .
[16] Melvin K. Simmons,et al. Hybrid simulation of cellular behavior , 2004, Bioinform..
[17] D. Wilkinson,et al. Moment closure approximations for stochastic kinetic models with rational rate laws. , 2011, Mathematical biosciences.
[18] Darren J. Wilkinson,et al. Moment closure based parameter inference of stochastic kinetic models , 2013, Stat. Comput..
[19] Thomas A. Henzinger,et al. Approximation of event probabilities in noisy cellular processes , 2011, Theor. Comput. Sci..
[20] Mudita Singhal,et al. Bioinformatics Original Paper Copasi—a Complex Pathway Simulator , 2022 .
[21] P. Swain,et al. Stochastic Gene Expression in a Single Cell , 2002, Science.
[22] C. D. Levermore,et al. Moment closure hierarchies for kinetic theories , 1996 .
[23] A. M. Turing,et al. The chemical basis of morphogenesis , 1952, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences.
[24] J. Hornos,et al. Symmetry in biology: from genetic code to stochastic gene regulation. , 2010, IET systems biology.
[25] Leo A. Goodman,et al. Population Growth of the Sexes , 1953 .
[26] Cédric Lhoussaine,et al. Theoretical basis of the community effect in development , 2010, BMC Systems Biology.
[27] M. Golubitsky,et al. Interior symmetry and local bifurcation in coupled cell networks , 2004 .
[28] M. Khammash,et al. The finite state projection algorithm for the solution of the chemical master equation. , 2006, The Journal of chemical physics.
[29] Jérôme Feret,et al. Formal Reduction for Rule-based Models , 2011, MFPS.
[30] Approximating the solution of the chemical master equation by aggregation , 2008 .
[31] E. Davidson. The Regulatory Genome: Gene Regulatory Networks In Development And Evolution , 2006 .
[32] D. Gillespie. The chemical Langevin equation , 2000 .
[33] François Lemaire,et al. Models of Stochastic Gene Expression and Weyl Algebra , 2010, ANB.
[34] Eric H Davidson,et al. The gene regulatory network basis of the "community effect," and analysis of a sea urchin embryo example. , 2010, Developmental biology.
[35] J.P. Hespanha,et al. Lognormal Moment Closures for Biochemical Reactions , 2006, Proceedings of the 45th IEEE Conference on Decision and Control.
[36] P. Whittle. On the Use of the Normal Approximation in the Treatment of Stochastic Processes , 1957 .
[37] C. Gillespie. Moment-closure approximations for mass-action models. , 2009, IET systems biology.