Exploring biomedical databases with BioNav

We demonstrate the BioNav system, a novel search interface for biomedical databases, such as PubMed. BioNav enables users to navigate large number of query results by categorizing them using MeSH; a comprehensive concept hierarchy used by PubMed. Once the query results are organized into a navigation tree, BioNav reveals only a small subset of the concept nodes at each step, selected such that the expected user navigation cost is minimized. In contrast, previous works expand the hierarchy in a predefined static manner, without navigation cost modeling. BioNav is available at http://db.cse.buffalo.edu/bionav.

[1]  Vagelis Hristidis,et al.  BioNav: Effective Navigation on Query Results of Biomedical Databases , 2009, 2009 IEEE 25th International Conference on Data Engineering.

[2]  Seung-won Hwang,et al.  Automatic categorization of query results , 2004, SIGMOD '04.

[3]  Joyce A. Mitchell,et al.  Gene Indexing: Characterization and Analysis of NLM's GeneRIFs , 2003, AMIA.

[4]  F B ROGERS,et al.  Medical Subject Headings , 1948, Nature.

[5]  Tao Li,et al.  Addressing diverse user preferences in SQL-query-result navigation , 2007, SIGMOD '07.

[6]  C E Lipscomb,et al.  Medical Subject Headings (MeSH). , 2000, Bulletin of the Medical Library Association.