Genomewide Analysis of PRC1 and PRC2 Occupancy Identifies Two Classes of Bivalent Domains
暂无分享,去创建一个
Simon Kasif | Eric S. Lander | Bradley E. Bernstein | Tarjei S. Mikkelsen | Esther Rheinbay | Xiaohui Xie | Haruhiko Koseki | Mitsuhiro Endoh | Chad Nusbaum | Chad A. Cowan | Mazhar Adli | T. Mikkelsen | C. Nusbaum | E. Lander | S. Kasif | B. Bernstein | Mazhar Adli | Xiaohui Xie | Manching Ku | R. Koche | E. Mendenhall | Aviva Presser | L. Ptaszek | Esther Rheinbay | H. Koseki | M. Endoh | C. Cowan | A. Chi | Manching Ku | Andrew S. Chi | Eric M. Mendenhall | Leon M. Ptaszek | Richard P. Koche | Aviva Presser | Mitsuhiro Endoh | Esther Rheinbay
[1] James A. Cuff,et al. Genome sequence, comparative analysis and haplotype structure of the domestic dog , 2005, Nature.
[2] A. McMahon,et al. T (Brachyury) is a direct target of Wnt3a during paraxial mesoderm specification. , 1999, Genes & development.
[3] M. Vidal,et al. Role of histone H2A ubiquitination in Polycomb silencing , 2004, Nature.
[4] I. Khrebtukova,et al. Transcriptome Profiling of Human and Murine ESCs Identifies Divergent Paths Required to Maintain the Stem Cell State , 2005, Stem cells.
[5] Haruhiko Koseki,et al. Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells , 2007, Nature Cell Biology.
[6] Alexander E. Kel,et al. TRANSFAC®: transcriptional regulation, from patterns to profiles , 2003, Nucleic Acids Res..
[7] Kristian Helin,et al. Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions. , 2006, Genes & development.
[8] Robert K. Davis,et al. The myoD gene family: nodal point during specification of the muscle cell lineage. , 1991, Science.
[9] L. M. Donahue,et al. POU domain genes are differentially expressed in the early stages after lineage commitment of the PNS-derived stem cell line, RT4-AC. , 1998, Brain research. Developmental brain research.
[10] Daniel Chourrout,et al. Genome Regulation by Polycomb and Trithorax Proteins , 2007, Cell.
[11] Sankar Ghosh,et al. Signaling to NF-kappaB. , 2004, Genes & development.
[12] V. Papaioannou,et al. Paracrine action of FGF4 during periimplantation development maintains trophectoderm and primitive endoderm , 2003, Genesis.
[13] J. Thomson,et al. Embryonic stem cell lines derived from human blastocysts. , 1998, Science.
[14] Michel Bellis,et al. Chromosomal Distribution of PcG Proteins during Drosophila Development , 2006, PLoS biology.
[15] Henriette O'Geen,et al. Suz12 binds to silenced regions of the genome in a cell-type-specific manner. , 2006, Genome research.
[16] J. Thomson,et al. Basic FGF and suppression of BMP signaling sustain undifferentiated proliferation of human ES cells , 2005, Nature Methods.
[17] D. Besser. Expression of Nodal, Lefty-A, and Lefty-B in Undifferentiated Human Embryonic Stem Cells Requires Activation of Smad2/3* , 2004, Journal of Biological Chemistry.
[18] O. Ohara,et al. Polycomb group proteins Ring1A/B are functionally linked to the core transcriptional regulatory circuitry to maintain ES cell identity , 2008, Development.
[19] M. Surani,et al. Genetic and Epigenetic Regulators of Pluripotency , 2007, Cell.
[20] Stephan Sauer,et al. Chromatin signatures of pluripotent cell lines , 2006, Nature Cell Biology.
[21] I. Longden,et al. EMBOSS: the European Molecular Biology Open Software Suite. , 2000, Trends in genetics : TIG.
[22] B. Jacobsen,et al. Cloning of a Mammalian Transcriptional Activator That Binds Unmethylated CpG Motifs and Shares a CXXC Domain with DNA Methyltransferase, Human Trithorax, and Methyl-CpG Binding Domain Protein 1 , 2000, Molecular and Cellular Biology.
[23] Anne H. O'Donnell,et al. Hyperconserved CpG domains underlie Polycomb-binding sites , 2007, Proceedings of the National Academy of Sciences.
[24] Wiebe Kruijer,et al. LIF-induced STAT3 signaling in murine versus human embryonal carcinoma (EC) cells. , 2002, Experimental cell research.
[25] Dustin E. Schones,et al. High-Resolution Profiling of Histone Methylations in the Human Genome , 2007, Cell.
[26] Atif Shahab,et al. Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells. , 2007, Cell stem cell.
[27] X. Chen,et al. The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells , 2006, Nature Genetics.
[28] J. Mesirov,et al. GenePattern 2.0 , 2006, Nature Genetics.
[29] Kristian Helin,et al. The Polycomb Group Protein Suz12 Is Required for Embryonic Stem Cell Differentiation , 2007, Molecular and Cellular Biology.
[30] Wyeth W. Wasserman,et al. JASPAR: an open-access database for eukaryotic transcription factor binding profiles , 2004, Nucleic Acids Res..
[31] T. Rabbitts,et al. The T cell leukemia LIM protein Lmo2 is necessary for adult mouse hematopoiesis. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[32] R. McKay,et al. New cell lines from mouse epiblast share defining features with human embryonic stem cells , 2007, Nature.
[33] A. Mortazavi,et al. Genome-Wide Mapping of in Vivo Protein-DNA Interactions , 2007, Science.
[34] Klaudia Walter,et al. Open access, freely available online PLoS BIOLOGY Highly Conserved Non-Coding Sequences Are Associated with Vertebrate Development , 2022 .
[35] Anke Sparmann,et al. Polycomb silencers control cell fate, development and cancer , 2006, Nature Reviews Cancer.
[36] Richard Bourgon,et al. Genome-wide analysis of Polycomb targets in Drosophila melanogaster , 2006, Nature Genetics.
[37] B. Steensel,et al. Genome-wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster , 2006, Nature Genetics.
[38] K. Lindblad-Toh,et al. Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals , 2005, Nature.
[39] M. Vidal,et al. Production of monoclonal antibodies against mammalian Ring1B proteins. , 2001, Hybridoma.
[40] Henry Adams,et al. REST maintains self-renewal and pluripotency of embryonic stem cells , 2008, Nature.
[41] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[42] S. Orkin,et al. An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells , 2008, Cell.
[43] J. Utikal,et al. Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution. , 2007, Cell stem cell.
[44] T. Mikkelsen,et al. Genome-scale DNA methylation maps of pluripotent and differentiated cells , 2008, Nature.
[45] M. Birke,et al. The MT domain of the proto-oncoprotein MLL binds to CpG-containing DNA and discriminates against methylation. , 2002, Nucleic acids research.
[46] Michael Q. Zhang,et al. Use of Chromatin Immunoprecipitation To Clone Novel E2F Target Promoters , 2001, Molecular and Cellular Biology.
[47] James A. Cuff,et al. A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells , 2006, Cell.
[48] Christina Chaivorapol,et al. Systematic Identification of cis-Regulatory Sequences Active in Mouse and Human Embryonic Stem Cells , 2007, PLoS genetics.
[49] Peter C. Hollenhorst,et al. Genome-wide analyses reveal properties of redundant and specific promoter occupancy within the ETS gene family. , 2007, Genes & development.
[50] R. Young,et al. Stem Cells, the Molecular Circuitry of Pluripotency and Nuclear Reprogramming , 2008, Cell.
[51] Michael Gribskov,et al. Combining evidence using p-values: application to sequence homology searches , 1998, Bioinform..
[52] T. Mikkelsen,et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells , 2007, Nature.
[53] G. Pan,et al. Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. , 2007, Cell stem cell.
[54] Fiona M. Watt,et al. Nanog maintains pluripotency of mouse embryonic stem cells by inhibiting NFκB and cooperating with Stat3 , 2008, Nature Cell Biology.
[55] Haruhiko Koseki,et al. Polycomb group proteins Ring1A/B link ubiquitylation of histone H2A to heritable gene silencing and X inactivation. , 2004, Developmental cell.
[56] E. Lander,et al. The Mammalian Epigenome , 2007, Cell.
[57] Mary Anne Wheeler,et al. Stem , 1985 .
[58] R. Paro,et al. Polycomb/Trithorax response elements and epigenetic memory of cell identity , 2007, Development.
[59] Michael B. Stadler,et al. Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors. , 2008, Molecular cell.
[60] C. Allis,et al. Mouse Polycomb Proteins Bind Differentially to Methylated Histone H3 and RNA and Are Enriched in Facultative Heterochromatin , 2006, Molecular and Cellular Biology.
[61] Y. Barrandon,et al. The transcriptional repressor CDP (Cutl1) is essential for epithelial cell differentiation of the lung and the hair follicle. , 2001, Genes & development.
[62] J. Zeitlinger,et al. Polycomb complexes repress developmental regulators in murine embryonic stem cells , 2006, Nature.
[63] G. Daley,et al. HoxB4 Confers Definitive Lymphoid-Myeloid Engraftment Potential on Embryonic Stem Cell and Yolk Sac Hematopoietic Progenitors , 2002, Cell.
[64] R. Jaenisch,et al. In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state , 2007, Nature.
[65] Megan F. Cole,et al. Control of Developmental Regulators by Polycomb in Human Embryonic Stem Cells , 2006, Cell.
[66] Ping Zhu,et al. Histone H2A monoubiquitination represses transcription by inhibiting RNA polymerase II transcriptional elongation. , 2008, Molecular cell.