Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12
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Elizabeth Yohannes | M. Radmacher | J. Slonczewski | Jessica C. Wilks | Piero Sanfilippo | E. Yohannes | S. S. Bondurant | B. D. Jones | Joan L Slonczewski | Michael D Radmacher | Everett T Hayes | Jessica C Wilks | Piero Sanfilippo | Daniel P Tate | Brian D Jones | Sandra S BonDurant | Brian D. Jones
[1] R. Titball,et al. The pH 6 Antigen of Yersinia pestisBinds to β1-Linked Galactosyl Residues in Glycosphingolipids , 1998, Infection and Immunity.
[2] G. Macfarlane,et al. Short chain fatty acids in human large intestine, portal, hepatic and venous blood. , 1987, Gut.
[3] K. Young,et al. AmpC and AmpH, proteins related to the class C beta-lactamases, bind penicillin and contribute to the normal morphology of Escherichia coli , 1997, Journal of bacteriology.
[4] R M Macnab,et al. pH homeostasis in Escherichia coli: measurement by 31P nuclear magnetic resonance of methylphosphonate and phosphate. , 1981, Proceedings of the National Academy of Sciences of the United States of America.
[5] K. Shanmugam,et al. N-terminal truncations in the FhlA protein result in formate- and MoeA-independent expression of the hyc (formate hydrogenlyase) operon of Escherichia coli. , 2001, Microbiology.
[6] P. King,et al. Response of hya Expression to External pH in Escherichia coli , 1999, Journal of bacteriology.
[7] D. Barstad,et al. A glutamate-dependent acid resistance gene in Escherichia coli , 1996, Journal of bacteriology.
[8] Pierre Baldi,et al. Global gene expression profiling in Escherichia coli K12: effects of oxygen availability and ArcA. , 2005, The Journal of biological chemistry.
[9] D. Georgellis,et al. Regulatory Circuitry of the CsrA/CsrB and BarA/UvrY Systems of Escherichia coli , 2002, Journal of bacteriology.
[10] R. Maier,et al. Molecular Hydrogen as an Energy Source for Helicobacter pylori , 2002, Science.
[11] G. Storz,et al. GadY, a Small-RNA Regulator of Acid Response Genes in Escherichia coli , 2004, Journal of bacteriology.
[12] S. Park,et al. Transcriptional regulation of the proton-translocating ATPase (atpIBEFHAGDC) operon of Escherichia coli: control by cell growth rate , 1996, Journal of bacteriology.
[13] P. Pomposiello,et al. Genome-Wide Transcriptional Profiling of theEscherichia coli Responses to Superoxide Stress and Sodium Salicylate , 2001, Journal of bacteriology.
[14] Joan L. Slonczewski,et al. Acid- and Base-Induced Proteins during Aerobic and Anaerobic Growth of Escherichia coli Revealed by Two-Dimensional Gel Electrophoresis , 1999, Journal of bacteriology.
[15] A. Böck,et al. Mechanism of regulation of the formate‐hydrogenlyase pathway by oxygen, nitrate, and pH: definition of the formate regulon , 1991, Molecular microbiology.
[16] J. Foster,et al. YjdE (AdiC) Is the Arginine:Agmatine Antiporter Essential for Arginine-Dependent Acid Resistance in Escherichia coli , 2003, Journal of bacteriology.
[17] S. Calderwood,et al. pepA, a Gene Mediating pH Regulation of Virulence Genes in Vibrio cholerae , 2001, Journal of bacteriology.
[18] Cheng Li,et al. DNA-Chip Analyzer (dChip) , 2003 .
[19] S. McAteer,et al. Why Is Carbonic Anhydrase Essential to Escherichia coli? , 2003, Journal of bacteriology.
[20] F. Neidhardt,et al. Analysis of proteins synthesized by Salmonella typhimurium during growth within a host macrophage , 1993, Journal of bacteriology.
[21] J. Dressman,et al. Upper Gastrointestinal (GI) pH in Young, Healthy Men and Women , 1990, Pharmaceutical Research.
[22] Yuliya N. Yoncheva,et al. pH-Dependent Expression of Periplasmic Proteins and Amino Acid Catabolism in Escherichia coli , 2002, Journal of bacteriology.
[23] T. Silhavy,et al. Signal Detection and Target Gene Induction by the CpxRA Two-Component System , 2003, Journal of bacteriology.
[24] Pierre Baldi,et al. Global Gene Expression Profiling in Escherichia coliK12 , 2002, The Journal of Biological Chemistry.
[25] J. Slonczewski,et al. Acid and base resistance in Escherichia coli and Shigella flexneri: role of rpoS and growth pH , 1994, Journal of bacteriology.
[26] George M Church,et al. Regulatory network of acid resistance genes in Escherichia coli , 2003, Molecular microbiology.
[27] Johan Nilsson,et al. Experimentally based topology models for E. coli inner membrane proteins , 2004, Protein science : a publication of the Protein Society.
[28] G. W. Hatfield,et al. Global Gene Expression Profiling in Escherichia coli K12 , 2003, Journal of Biological Chemistry.
[29] John W. Foster,et al. Escherichia coli acid resistance: tales of an amateur acidophile , 2004, Nature Reviews Microbiology.
[30] O. Lewinson,et al. Do physiological roles foster persistence of drug/multidrug-efflux transporters? A case study , 2005, Nature Reviews Microbiology.
[31] T. Conway,et al. Gene Expression Profiling of the pH Response in Escherichia coli , 2002, Journal of bacteriology.
[32] S. Finkel,et al. The Growth Advantage in Stationary-Phase PhenotypeConferred by rpoS Mutations Is Dependent on the pH andNutrientEnvironment , 2003, Journal of bacteriology.
[33] Jeremy D. Glasner,et al. Systematic Mutagenesis of the Escherichia coli Genome , 2004, Journal of bacteriology.
[34] A. Böck,et al. Anaerobic Formate and Hydrogen Metabolism. , 2004, EcoSal Plus.
[35] S. Altuvia. Regulatory Small RNAs: the Key to Coordinating Global Regulatory Circuits , 2004, Journal of bacteriology.
[36] John W. Foster,et al. Collaborative Regulation of Escherichia coli Glutamate-Dependent Acid Resistance by Two AraC-Like Regulators, GadX and GadW (YhiW) , 2002, Journal of bacteriology.
[37] Michael I. Jordan,et al. Lessons from Escherichia coli genes similarly regulated in response to nitrogen and sulfur limitation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[38] Paul S. Cohen,et al. Genes of the GadX-GadW Regulon in Escherichia coli , 2003, Journal of bacteriology.
[39] G. Bennett,et al. Construction of lac fusions to the inducible arginine‐and lysine decarboxylase genes of Escherichia coli K12 , 1989, Molecular microbiology.
[40] W. Boos,et al. Hexose/Pentose and Hexitol/Pentitol Metabolism , 2005, EcoSal Plus.
[41] E. Padan,et al. Induction of SOS functions by alkaline intracellular pH in Escherichia coli , 1986, Journal of bacteriology.
[42] J. Foster,et al. Escherichia coli acid resistance: cAMP receptor protein and a 20 bp cis-acting sequence control pH and stationary phase expression of the gadA and gadBC glutamate decarboxylase genes. , 2001, Microbiology.
[43] J. Slonczewski,et al. Polyamine stress at high pH in Escherichia coli K-12 , 2005, BMC Microbiology.
[44] J. Hardcastle,et al. Measurement of gastrointestinal pH profiles in normal ambulant human subjects. , 1988, Gut.
[45] Yung-Sheng Chang,et al. Regulation of the Hydrogenase-4 Operon of Escherichia coli by the σ54-Dependent Transcriptional Activators FhlA and HyfR , 2002, Journal of bacteriology.
[46] Hiroshi Kobayashi,et al. Expression of chaA, a sodium ion extrusion system of Escherichia coli, is regulated by osmolarity and pH. , 2002, Biochimica et biophysica acta.
[47] F. Blattner,et al. Global Transcriptional Programs Reveal a Carbon Source Foraging Strategy by Escherichia coli*♦ , 2005, Journal of Biological Chemistry.
[48] K. Bagramyan,et al. Hydrogenase 3 but not hydrogenase 4 is major in hydrogen gas production by Escherichia coli formate hydrogenlyase at acidic pH and in the presence of external formate , 2007, Cell Biochemistry and Biophysics.
[49] William T. Self,et al. Expression and Regulation of a Silent Operon, hyf, Coding for Hydrogenase 4 Isoenzyme in Escherichia coli , 2004, Journal of bacteriology.
[50] A. Yamaguchi,et al. Analysis of a Complete Library of Putative Drug Transporter Genes in Escherichia coli , 2001, Journal of bacteriology.
[51] Michael I. Jordan,et al. Sulfur and Nitrogen Limitation in Escherichia coli K-12: Specific Homeostatic Responses , 2005, Journal of bacteriology.
[52] O. Lewinson,et al. Alkalitolerance: a biological function for a multidrug transporter in pH homeostasis. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[53] External-pH-Dependent Expression of the Maltose Regulon and ompF Gene in Escherichia coli Is Affected by the Level of Glycerol Kinase, Encoded byglpK , 2001, Journal of bacteriology.
[54] D. Siegele,et al. Global Analysis of Escherichia coli Gene Expression during the Acetate-Induced Acid Tolerance Response , 2001, Journal of bacteriology.
[55] J. Russell,et al. The effects of fermentation acids on bacterial growth. , 1998, Advances in microbial physiology.
[56] Ka Yee Yeung,et al. Principal component analysis for clustering gene expression data , 2001, Bioinform..
[57] R. G. Kroll,et al. The effect of food preservatives on pH homeostasis in Escherichia coli. , 1984, Journal of general microbiology.
[58] August Böck,et al. HypF, a Carbamoyl Phosphate-converting Enzyme Involved in [NiFe] Hydrogenase Maturation* , 2002, The Journal of Biological Chemistry.
[59] K. Bagramyan,et al. The roles of hydrogenases 3 and 4, and the F0F1‐ATPase, in H2 production by Escherichia coli at alkaline and acidic pH , 2002, FEBS letters.
[60] M. Radmacher,et al. pH Regulates Genes for Flagellar Motility, Catabolism, and Oxidative Stress in Escherichia coli K-12 , 2005, Journal of bacteriology.
[61] J. Slonczewski,et al. pH-Dependent Catabolic Protein Expression during Anaerobic Growth of Escherichia coli K-12 , 2004, Journal of bacteriology.
[62] George-John E. Nychas,et al. Development and Evaluation of a Model Predicting the Survival of Escherichia coli O157:H7 NCTC 12900 in Homemade Eggplant Salad at Various Temperatures, pHs, and Oregano Essential Oil Concentrations , 2000, Applied and Environmental Microbiology.
[63] A. Camilli,et al. Acid tolerance of gastrointestinal pathogens. , 2002, Current opinion in microbiology.
[64] A. Böck,et al. Molecular characterization of an operon (hyp) necessary for the activity of the three hydrogenase isoenzymes in Escherichia coli , 1991, Molecular microbiology.
[65] Robert A. LaRossa,et al. DNA Microarray-Mediated Transcriptional Profiling of the Escherichia coli Response to Hydrogen Peroxide , 2001, Journal of bacteriology.
[66] E. Wit. Design and Analysis of DNA Microarray Investigations , 2004, Human Genomics.
[67] H. Sahm,et al. DNA Microarray Analyses of the Long-Term Adaptive Response of Escherichia coli to Acetate and Propionate , 2003, Applied and Environmental Microbiology.
[68] V. Wendisch,et al. Genome-Wide Analysis of the General Stress Response Network in Escherichia coli: σS-Dependent Genes, Promoters, and Sigma Factor Selectivity , 2005, Journal of bacteriology.
[69] A. Yamaguchi,et al. EvgA of the Two-Component Signal Transduction System Modulates Production of the YhiUV Multidrug Transporter in Escherichia coli , 2002, Journal of bacteriology.
[70] G. Bennett,et al. Molecular characterization of adiY, a regulatory gene which affects expression of the biodegradative acid-induced arginine decarboxylase gene (adiA) of Escherichia coli. , 1996, Microbiology.
[71] H. Schellhorn,et al. Regulation of katF and katE in Escherichia coli K-12 by weak acids , 1992, Journal of bacteriology.
[72] C. Li,et al. Analyzing high‐density oligonucleotide gene expression array data , 2001, Journal of cellular biochemistry.
[73] D. Allison,et al. Microarray data analysis: from disarray to consolidation and consensus , 2006, Nature Reviews Genetics.
[74] D. Botstein,et al. Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[75] Jessica L. Rowe,et al. Complex Transcriptional Control Links NikABCDE-Dependent Nickel Transport with Hydrogenase Expression in Escherichia coli , 2005, Journal of bacteriology.
[76] H. Margalit,et al. Novel small RNA-encoding genes in the intergenic regions of Escherichia coli , 2001, Current Biology.
[77] M. Neely,et al. Roles of LysP and CadC in mediating the lysine requirement for acid induction of the Escherichia coli cad operon , 1994, Journal of bacteriology.
[78] J. Foster,et al. Ch. 96: pH-Regulated Genes and Survival at Extreme pH , 1987 .
[79] M. Quail,et al. A 12-cistron Escherichia coli operon (hyf) encoding a putative proton-translocating formate hydrogenlyase system. , 1997, Microbiology.
[80] G. von Heijne,et al. Protein Complexes of the Escherichia coli Cell Envelope* , 2005, Journal of Biological Chemistry.
[81] K. Shanmugam,et al. Isolation and characterization of mutant strains of Escherichia coli altered in H2 metabolism , 1985, Journal of bacteriology.
[82] J. Slonczewski,et al. Alkaline induction of a novel gene locus, alx, in Escherichia coli , 1990, Journal of bacteriology.
[83] E. Padan,et al. Physiological role of nhaB, a specific Na+/H+ antiporter in Escherichia coli. , 1993, The Journal of biological chemistry.
[84] N. Majdalani,et al. Regulatory roles for small RNAs in bacteria. , 2003, Current opinion in microbiology.
[85] Yuliya Yoncheva,et al. Acetate and Formate Stress: Opposite Responses in the Proteome of Escherichia coli , 2001, Journal of bacteriology.
[86] K. Gajiwala,et al. HDEA, a periplasmic protein that supports acid resistance in pathogenic enteric bacteria. , 2000, Journal of molecular biology.
[87] S. Broitman,et al. Influence of gastric acidity on bacterial and parasitic enteric infections. A perspective. , 1973, Annals of internal medicine.
[88] E. Padan,et al. Overproduction and purification of a functional Na+/H+ antiporter coded by nhaA (ant) from Escherichia coli. , 1991, The Journal of biological chemistry.
[89] M. Mandrand-Berthelot,et al. Catabolism of Hexuronides, Hexuronates, Aldonates, and Aldarates. , 2004, EcoSal Plus.
[90] T. Silhavy,et al. Escherichia coli Starvation Diets: Essential Nutrients Weigh in Distinctly , 2005, Journal of bacteriology.
[91] A. Yamaguchi,et al. Indole induces the expression of multidrug exporter genes in Escherichia coli , 2004, Molecular microbiology.
[92] P. Vignais,et al. Molecular biology of microbial hydrogenases. , 2004, Current issues in molecular biology.
[93] A. Böck,et al. Network of Hydrogenase Maturation in Escherichia coli: Role of Accessory Proteins HypA and HybF , 2002, Journal of bacteriology.
[94] Christina Cramer,et al. Antibiotic Susceptibility Profiles ofEscherichia coli Strains Lacking Multidrug Efflux Pump Genes , 2001, Antimicrobial Agents and Chemotherapy.
[95] Akira Ishihama,et al. Transcriptional response of Escherichia coli to external copper , 2005, Molecular microbiology.