LAIPT: Lysine Acetylation Site Identification with Polynomial Tree
暂无分享,去创建一个
Wenzheng Bao | Bin Yang | Zhengwei Li | Bin Yang | Wenzheng Bao | Zhengwei Li | Yong Zhou | Yong Zhou
[1] Wei Chen,et al. iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition , 2013, Nucleic acids research.
[2] R. Marmorstein,et al. Histone acetyltransferases: function, structure, and catalysis. , 2001, Current opinion in genetics & development.
[3] Junjie Chen,et al. Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences , 2015, Nucleic Acids Res..
[4] Kuo-Chen Chou,et al. iPhosT-PseAAC: Identify phosphothreonine sites by incorporating sequence statistical moments into PseAAC. , 2018, Analytical biochemistry.
[5] M. Mann,et al. Proteomic analysis of post-translational modifications , 2003, Nature Biotechnology.
[6] Dong-Sheng Cao,et al. propy: a tool to generate various modes of Chou's PseAAC , 2013, Bioinform..
[7] Jiwen Dong,et al. Time-series forecasting using flexible neural tree model , 2005, Inf. Sci..
[8] Thomas A. Milne,et al. A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling , 2006, Nature.
[9] K. Chou,et al. pLoc-mEuk: Predict subcellular localization of multi-label eukaryotic proteins by extracting the key GO information into general PseAAC. , 2018, Genomics.
[10] Antonio Lavecchia,et al. Machine-learning approaches in drug discovery: methods and applications. , 2015, Drug discovery today.
[11] De-Shuang Huang,et al. Pupylation sites prediction with ensemble classification model , 2017, Int. J. Data Min. Bioinform..
[12] Chaochun Wei,et al. LAceP: Lysine Acetylation Site Prediction Using Logistic Regression Classifiers , 2014, PloS one.
[13] Kuo-Chen Chou,et al. Quat-2L: a web-server for predicting protein quaternary structural attributes , 2011, Molecular Diversity.
[14] K. Chou,et al. iDNA6mA-PseKNC: Identifying DNA N6-methyladenosine sites by incorporating nucleotide physicochemical properties into PseKNC. , 2018, Genomics.
[15] Yu Shyr,et al. Improved prediction of lysine acetylation by support vector machines. , 2009, Protein and peptide letters.
[16] K. Chou,et al. iUbiq-Lys: prediction of lysine ubiquitination sites in proteins by extracting sequence evolution information via a gray system model , 2015, Journal of biomolecular structure & dynamics.
[17] Dinshaw J. Patel,et al. Multivalent engagement of chromatin modifications by linked binding modules , 2007, Nature Reviews Molecular Cell Biology.
[18] Kuo-Chen Chou,et al. pLoc-mHum: predict subcellular localization of multi-location human proteins via general PseAAC to winnow out the crucial GO information , 2018, Bioinform..
[19] De-Shuang Huang,et al. iEnhancer‐EL: identifying enhancers and their strength with ensemble learning approach , 2018, Bioinform..
[20] De-Shuang Huang,et al. Novel human microbe-disease association prediction using network consistency projection , 2017, BMC Bioinformatics.
[21] Wei Chen,et al. iRNA-PseU: Identifying RNA pseudouridine sites , 2016, Molecular therapy. Nucleic acids.
[22] Xiao Sun,et al. Sequence-Based Prediction of DNA-Binding Residues in Proteins with Conservation and Correlation Information , 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[23] Shao-Ping Shi,et al. PLMLA: prediction of lysine methylation and lysine acetylation by combining multiple features. , 2012, Molecular bioSystems.
[24] Kuo-Chen Chou,et al. 2L-piRNA: A Two-Layer Ensemble Classifier for Identifying Piwi-Interacting RNAs and Their Function , 2017, Molecular therapy. Nucleic acids.
[25] Kuo-Chen Chou,et al. iRNAm5C-PseDNC: identifying RNA 5-methylcytosine sites by incorporating physical-chemical properties into pseudo dinucleotide composition , 2017, Oncotarget.
[26] Dong Xu,et al. iPhos‐PseEvo: Identifying Human Phosphorylated Proteins by Incorporating Evolutionary Information into General PseAAC via Grey System Theory , 2017, Molecular informatics.
[27] Kuo-Chen Chou,et al. iPreny-PseAAC: Identify C-terminal Cysteine Prenylation Sites in Proteins by Incorporating Two Tiers of Sequence Couplings into PseAAC. , 2017, Medicinal chemistry (Shariqah (United Arab Emirates)).
[28] Ren Long,et al. iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudo k-tuple nucleotide composition , 2016, Bioinform..
[29] Thomas A. Milne,et al. WDR5 Associates with Histone H3 Methylated at K4 and Is Essential for H3 K4 Methylation and Vertebrate Development , 2005, Cell.
[30] Shu-Yun Huang,et al. Position-Specific Analysis and Prediction for Protein Lysine Acetylation Based on Multiple Features , 2012, PLoS ONE.
[31] Zhu-Hong You,et al. CIPPN: computational identification of protein pupylation sites by using neural network , 2017, Oncotarget.
[32] Kuo-Chen Chou,et al. pLoc-mGpos: Incorporate Key Gene Ontology Information into General PseAAC for Predicting Subcellular Localization of Gram-Positive Bacterial Proteins , 2017 .
[33] Wenzheng Bao,et al. Prediction of protein structure classes with flexible neural tree. , 2014, Bio-medical materials and engineering.
[34] T. Kouzarides. Chromatin Modifications and Their Function , 2007, Cell.
[35] K. Chou,et al. Prediction of protein structural classes. , 1995, Critical reviews in biochemistry and molecular biology.
[36] Jeffrey Skolnick,et al. Efficient prediction of nucleic acid binding function from low-resolution protein structures. , 2006, Journal of molecular biology.
[37] Kuo-Chen Chou,et al. iPhos-PseEn: Identifying phosphorylation sites in proteins by fusing different pseudo components into an ensemble classifier , 2016, Oncotarget.
[38] Zigang Dong,et al. Post-translational modification of p53 in tumorigenesis , 2004, Nature Reviews Cancer.
[39] C. Allis,et al. Translating the Histone Code , 2001, Science.
[40] Kuo-Chen Chou,et al. iPTM-mLys: identifying multiple lysine PTM sites and their different types , 2016, Bioinform..
[41] Bo Yang,et al. Feature selection and classification using flexible neural tree , 2006, Neurocomputing.
[42] Florian Gnad,et al. Predicting post-translational lysine acetylation using support vector machines , 2010, Bioinform..
[43] K. Chou,et al. pRNAm-PC: Predicting N(6)-methyladenosine sites in RNA sequences via physical-chemical properties. , 2016, Analytical biochemistry.
[44] Yuehui Chen,et al. Classification of Protein Structure Classes on Flexible Neutral Tree , 2017, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[45] K. Chou,et al. iRNA-PseColl: Identifying the Occurrence Sites of Different RNA Modifications by Incorporating Collective Effects of Nucleotides into PseKNC , 2017, Molecular therapy. Nucleic acids.
[46] Gary Walsh,et al. Post-translational modifications in the context of therapeutic proteins , 2006, Nature Biotechnology.
[47] K. Chou. Prediction of signal peptides using scaled window , 2001, Peptides.
[48] Wei Gu,et al. p53 post-translational modification: deregulated in tumorigenesis. , 2010, Trends in molecular medicine.
[49] Geoffrey I. Webb,et al. Accurate in silico identification of species-specific acetylation sites by integrating protein sequence-derived and functional features , 2014, Scientific Reports.
[50] K. Chou,et al. iKcr-PseEns: Identify lysine crotonylation sites in histone proteins with pseudo components and ensemble classifier. , 2017, Genomics.
[51] Kuo-Chen Chou,et al. An Unprecedented Revolution in Medicinal Chemistry Driven by the Progress of Biological Science. , 2017, Current topics in medicinal chemistry.
[52] Kyungsook Han,et al. Mutli-Features Prediction of Protein Translational Modification Sites , 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[53] K. Chou,et al. iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteine S-nitrosylation sites in proteins , 2013, PeerJ.
[54] Kuo-Chen Chou,et al. pSumo-CD: predicting sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled effects into general PseAAC , 2016, Bioinform..
[55] K. Chou,et al. iDNA-Prot: Identification of DNA Binding Proteins Using Random Forest with Grey Model , 2011, PloS one.
[56] Kuo-Chen Chou,et al. Some remarks on predicting multi-label attributes in molecular biosystems. , 2013, Molecular bioSystems.
[57] Ming-Ming Zhou,et al. Bromodomain: an acetyl‐lysine binding domain , 2002, FEBS letters.
[58] Kuo-Chen Chou,et al. pLoc-mPlant: predict subcellular localization of multi-location plant proteins by incorporating the optimal GO information into general PseAAC. , 2017, Molecular bioSystems.
[59] K. Chou,et al. iRNA-Methyl: Identifying N(6)-methyladenosine sites using pseudo nucleotide composition. , 2015, Analytical biochemistry.
[60] Fan Yang,et al. iPromoter-2L: a two-layer predictor for identifying promoters and their types by multi-window-based PseKNC , 2018, Bioinform..
[61] K. Chou,et al. iHyd-PseAAC: Predicting Hydroxyproline and Hydroxylysine in Proteins by Incorporating Dipeptide Position-Specific Propensity into Pseudo Amino Acid Composition , 2014, International journal of molecular sciences.
[62] Carsten Janke,et al. Post-translational regulation of the microtubule cytoskeleton: mechanisms and functions , 2011, Nature Reviews Molecular Cell Biology.
[63] K. Chou,et al. iNitro-Tyr: Prediction of Nitrotyrosine Sites in Proteins with General Pseudo Amino Acid Composition , 2014, PloS one.
[64] K. Chou,et al. iCar-PseCp: identify carbonylation sites in proteins by Monte Carlo sampling and incorporating sequence coupled effects into general PseAAC , 2016, Oncotarget.
[65] Bo Yang,et al. Hybrid flexible neural‐tree‐based intrusion detection systems , 2007, Int. J. Intell. Syst..
[66] De-Shuang Huang,et al. iRO-3wPseKNC: identify DNA replication origins by three-window-based PseKNC , 2018, Bioinform..
[67] Dong Xu,et al. Systematic analysis of human lysine acetylation proteins and accurate prediction of human lysine acetylation through bi-relative adapted binomial score Bayes feature representation. , 2012, Molecular bioSystems.
[68] K. Chou,et al. Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences. , 2015, Molecular bioSystems.
[69] Kuo-Chen Chou,et al. pLoc-mGneg: Predict subcellular localization of Gram-negative bacterial proteins by deep gene ontology learning via general PseAAC. , 2017, Genomics.
[70] Kuo-Chen Chou,et al. pLoc‐mAnimal: predict subcellular localization of animal proteins with both single and multiple sites , 2017, Bioinform..
[71] K. Chou,et al. iMethyl-PseAAC: Identification of Protein Methylation Sites via a Pseudo Amino Acid Composition Approach , 2014, BioMed research international.