Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes.
暂无分享,去创建一个
David Haussler | Francesca Chiaromonte | Webb Miller | Scott Schwartz | Ross C Hardison | Arian F Smit | D. Haussler | K. Roskin | W. Miller | A. Smit | Shan Yang | R. Hardison | F. Chiaromonte | S. Schwartz | Shan Yang | Krishna M Roskin
[1] P. Deininger,et al. Recent amplification of rat ID sequences. , 1996, Journal of molecular biology.
[2] G. Glazko,et al. Origin of a substantial fraction of human regulatory sequences from transposable elements. , 2003, Trends in genetics : TIG.
[3] S. Tavaré. Some probabilistic and statistical problems in the analysis of DNA sequences , 1986 .
[4] David Haussler,et al. Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. , 2003, Genome research.
[5] W S Watkins,et al. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity. , 2001, Journal of molecular biology.
[6] S. Pääbo,et al. A neutral explanation for the correlation of diversity with recombination rates in humans. , 2003, American journal of human genetics.
[7] Jia Li,et al. Significance Of inter-species matches when evolutionary rate varies , 2002, RECOMB '02.
[8] J. Jurka,et al. Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[9] S. O’Brien,et al. Placental mammal diversification and the Cretaceous–Tertiary boundary , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[10] H. Ellegren,et al. Mutation rate variation in the mammalian genome. , 2003, Current opinion in genetics & development.
[11] A. Smit. Identification of a new, abundant superfamily of mammalian LTR-transposons. , 1993, Nucleic acids research.
[12] M. Batzer,et al. Potential gene conversion and source genes for recently integrated Alu elements. , 2000, Genome research.
[13] T. Jukes,et al. Evolutionary constraints and the neutral theory , 2005, Journal of Molecular Evolution.
[14] R. Gibbs,et al. A human dimorphism resulting from loss of an Alu. , 1992, Genomics.
[15] Martin J. Lercher,et al. Clustering of housekeeping genes provides a unified model of gene order in the human genome , 2002, Nature Genetics.
[16] Lisa M. D'Souza,et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution , 2004, Nature.
[17] Ziheng Yang,et al. PAML: a program package for phylogenetic analysis by maximum likelihood , 1997, Comput. Appl. Biosci..
[18] Thierry Heidmann,et al. LINE-mediated retrotransposition of marked Alu sequences , 2003, Nature Genetics.
[19] Wen-Hsiung Li,et al. Mutation rates differ among regions of the mammalian genome , 1989, Nature.
[20] Mouse Genome Sequencing Consortium. Initial sequencing and comparative analysis of the mouse genome , 2002, Nature.
[21] C. Schmid,et al. Selective stimulation of translational expression by Alu RNA. , 2002, Nucleic acids research.
[22] M. Batzer,et al. Non-traditional Alu evolution and primate genomic diversity. , 2002, Journal of molecular biology.
[23] C. Schmid,et al. Potential Alu Function: Regulation of the Activity of Double-Stranded RNA-Activated Kinase PKR , 1998, Molecular and Cellular Biology.
[24] Hans Ellegren,et al. Deterministic mutation rate variation in the human genome. , 2002, Genome research.
[25] T. Jukes. CHAPTER 24 – Evolution of Protein Molecules , 1969 .
[26] M. Batzer,et al. Alu repeats and human genomic diversity , 2002, Nature Reviews Genetics.
[27] T. Shaikh,et al. Sequence diversity and chromosomal distribution of "young" Alu repeats. , 1995, Gene.
[28] C. Schmid,et al. Recently transposed Alu repeats result from multiple source genes. , 1990, Nucleic acids research.
[29] A. Smit,et al. Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences. , 1995, Journal of molecular biology.
[30] Jia Li,et al. Significance of Interspecies Matches when Evolutionary Rate Varies , 2003, J. Comput. Biol..
[31] A. Smit,et al. The origin of interspersed repeats in the human genome. , 1996, Current opinion in genetics & development.
[32] Qiliang Li,et al. Locus control regions: coming of age at a decade plus. , 1999, Trends in genetics : TIG.
[33] P. Lio’,et al. Molecular phylogenetics: state-of-the-art methods for looking into the past. , 2001, Trends in genetics : TIG.
[34] V. B. Yap,et al. Association between divergence and interspersed repeats in mammalian noncoding genomic DNA , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[35] D. Haussler,et al. Human-mouse alignments with BLASTZ. , 2003, Genome research.
[36] Colin N. Dewey,et al. Initial sequencing and comparative analysis of the mouse genome. , 2002 .
[37] L. Pennacchio,et al. Genomic strategies to identify mammalian regulatory sequences , 2001, Nature Reviews Genetics.
[38] J. V. Moran,et al. Initial sequencing and analysis of the human genome. , 2001, Nature.
[39] Ziheng Yang. Estimating the pattern of nucleotide substitution , 1994, Journal of Molecular Evolution.
[40] R. Adkins,et al. Molecular phylogeny and divergence time estimates for major rodent groups: evidence from multiple genes. , 2001, Molecular biology and evolution.
[41] M. Nachman,et al. Single nucleotide polymorphisms and recombination rate in humans. , 2001, Trends in genetics : TIG.
[42] Laurence D. Hurst,et al. Evidence for co-evolution of gene order and recombination rate , 2003, Nature Genetics.
[43] M. Batzer,et al. Mammalian retroelements. , 2002, Genome research.
[44] Martin J Lercher,et al. Human SNP variability and mutation rate are higher in regions of high recombination. , 2002, Trends in genetics : TIG.
[45] Francesca Chiaromonte,et al. Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat. , 2004, Genome research.