Interpolation effects in tabulated interatomic potentials

Empirical interatomic potentials are widely used in atomistic simulations due to their ability to compute the total energy and interatomic forces quickly relative to more accurate quantum calculations. The functional forms in these potentials are sometimes stored in a tabulated format, as a collection of data points (argument–value pairs), and a suitable interpolation (often spline-based) is used to obtain the function value at an arbitrary point. We explore the effect of these interpolations on the potential predictions by calculating the quasi-harmonic thermal expansion and finite-temperature elastic constant of a one-dimensional chain compared with molecular dynamics simulations. Our results show that some predictions are affected by the choice of interpolation regardless of the number of tabulated data points. Our results clearly indicate that the interpolation must be considered part of the potential definition, especially for lattice dynamics properties that depend on higher-order derivatives of the potential. This is facilitated by the Knowledgebase of Interatomic Models (KIM) project, in which both the tabulated data ('parameterized model') and the code that interpolates them to compute energy and forces ('model driver') are stored and given unique citeable identifiers. We have developed cubic and quintic spline model drivers for pair functional type models (EAM, FS, EMT) and uploaded them to the OpenKIM repository (https://openkim.org).

[1]  Danny Perez,et al.  Hyper-QC: An accelerated finite-temperature quasicontinuum method using hyperdynamics , 2014 .

[2]  Joel M. Bowman,et al.  Self‐consistent field energies and wavefunctions for coupled oscillators , 1978 .

[3]  Daw Model of metallic cohesion: The embedded-atom method. , 1989, Physical review. B, Condensed matter.

[4]  W. G. Horner,et al.  A new method of solving numerical equations of all orders, by continuous approximation , 1815 .

[5]  Jacobsen,et al.  Interatomic interactions in the effective-medium theory. , 1987, Physical review. B, Condensed matter.

[6]  Janet E. Jones On the determination of molecular fields. —II. From the equation of state of a gas , 1924 .

[7]  James B. Adams,et al.  Interatomic Potentials from First-Principles Calculations: The Force-Matching Method , 1993, cond-mat/9306054.

[8]  Michael J. Mehl,et al.  Phase stability in the Fe–Ni system: Investigation by first-principles calculations and atomistic simulations , 2005 .

[9]  Julian D. Gale,et al.  GULP: A computer program for the symmetry-adapted simulation of solids , 1997 .

[10]  Randall J. LeVeque,et al.  Finite difference methods for ordinary and partial differential equations - steady-state and time-dependent problems , 2007 .

[11]  W Smith,et al.  DL_POLY_2.0: a general-purpose parallel molecular dynamics simulation package. , 1996, Journal of molecular graphics.

[12]  M. Baskes,et al.  Modified embedded-atom potentials for cubic materials and impurities. , 1992, Physical review. B, Condensed matter.

[13]  M. Finnis,et al.  A simple empirical N-body potential for transition metals , 1984 .

[14]  Murray S. Daw,et al.  The embedded-atom method: a review of theory and applications , 1993 .

[15]  Michael C. Moody,et al.  Calculation of elastic constants using isothermal molecular dynamics. , 1986, Physical review. B, Condensed matter.

[16]  Susan B. Sinnott,et al.  NSF cyberinfrastructures: A new paradigm for advancing materials simulation , 2013 .

[17]  Janet E. Jones On the Determination of Molecular Fields. I. From the Variation of the Viscosity of a Gas with Temperature , 1924 .

[18]  Donald W. Brenner,et al.  A second-generation reactive empirical bond order (REBO) potential energy expression for hydrocarbons , 2002 .

[19]  James P. Sethna,et al.  The potential of atomistic simulations and the knowledgebase of interatomic models , 2011 .

[20]  Ryan S. Elliott,et al.  A local quasicontinuum method for 3D multilattice crystalline materials: Application to shape-memory alloys , 2014 .

[21]  Nicolas Triantafyllidis,et al.  Stability of crystalline solids - I: Continuum and atomic lattice considerations , 2006 .

[22]  J. Harrison,et al.  Elastic constants of diamond from molecular dynamics simulations , 2006, Journal of physics. Condensed matter : an Institute of Physics journal.

[23]  Mitchell Luskin,et al.  A multilattice quasicontinuum for phase transforming materials: Cascading Cauchy Born kinematics , 2007 .

[24]  Michael J. Mehl,et al.  Interatomic potentials for monoatomic metals from experimental data and ab initio calculations , 1999 .

[25]  Subrahmanyam Pattamatta,et al.  Mapping the stochastic response of nanostructures , 2014, Proceedings of the National Academy of Sciences.

[26]  John R. Ray,et al.  Elastic constants and statistical ensembles in molecular dynamics , 1988 .

[27]  P. Morse Diatomic Molecules According to the Wave Mechanics. II. Vibrational Levels , 1929 .

[28]  Heine,et al.  Cohesion in aluminum systems: A first-principles assessment of "glue" schemes. , 1993, Physical review letters.

[29]  K. Judd Numerical methods in economics , 1998 .

[30]  W. Macdonald,et al.  Thermodynamic properties of fcc metals at high temperatures , 1981 .

[31]  M. Baskes,et al.  Embedded-atom method: Derivation and application to impurities, surfaces, and other defects in metals , 1984 .

[32]  Ellad B. Tadmor,et al.  Modeling Materials: Continuum, Atomistic and Multiscale Techniques , 2011 .

[33]  V. Heine,et al.  Ab initio databases for fitting and testing interatomic potentials , 1996 .

[34]  Nicolas Triantafyllidis,et al.  Stability of crystalline solids—II: Application to temperature-induced martensitic phase transformations in a bi-atomic crystal , 2006 .

[35]  Y. Mishin,et al.  Interatomic potential for the Al-Cu system , 2011 .

[36]  Steve Plimpton,et al.  Fast parallel algorithms for short-range molecular dynamics , 1993 .

[37]  Frédéric Legoll,et al.  Finite-Temperature Quasi-Continuum , 2013 .

[38]  Jörg Stadler,et al.  IMD: A Software Package for Molecular Dynamics Studies on Parallel Computers , 1997 .