Class 1 integrons and multiple mobile genetic elements in clinical isolates of the Klebsiella pneumoniae complex from a tertiary hospital in eastern China
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Qiyu Bao | Junwan Lu | Teng Xu | Yanfang Zhang | Mei Zhu | Lan Wang | Jialei Liang | Yunliang Hu | Jiefen Xu | Lan Wang | Chunxia Yan | Xuying He | Lin Wu | Lin Wu
[1] K. Okamoto,et al. Accurate Identification of Klebsiella variicola by MALDI-TOF Mass Spectrometry in Clinical Microbiology Laboratories , 2022, Microbiology spectrum.
[2] R. Hall,et al. Mechanisms of IS26-Mediated Amplification of the aphA1 Gene Leading to Tobramycin Resistance in an Acinetobacter baumannii Isolate , 2022, Microbiology spectrum.
[3] Wei Liang,et al. The Application of the CRISPR-Cas System in Antibiotic Resistance , 2022, Infection and drug resistance.
[4] G. Hu,et al. Characteristics of the multiple replicon plasmid IncX1-X1 in multidrug-resistant Escherichia coli from Malayan pangolin (Manis javanica). , 2022, Integrative zoology.
[5] Stephen C. Watts,et al. A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex , 2021, Nature Communications.
[6] P. Bork,et al. Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation , 2021, Nucleic Acids Res..
[7] H. Goli,et al. High frequency of multidrug-resistant (MDR) Klebsiella pneumoniae harboring several β-lactamase and integron genes collected from several hospitals in the north of Iran , 2021, Annals of clinical microbiology and antimicrobials.
[8] H. Valdovinos-Torres,et al. A Klebsiella variicola Plasmid Confers Hypermucoviscosity-Like Phenotype and Alters Capsule Production and Virulence , 2020, Frontiers in Microbiology.
[9] B. Gu,et al. Clinical Molecular Epidemiology of Carbapenem-Resistant Klebsiella pneumoniae Among Pediatric Patients in Jiangsu Province, China , 2020, Infection and drug resistance.
[10] Wei Zhang,et al. Virulence evolution, molecular mechanisms and prevalence of ST11 Carbapenem-resistant Klebsiella pneumoniae in China: A review over ten last years. , 2020, Journal of global antimicrobial resistance.
[11] K. Holt,et al. Population genomics of Klebsiella pneumoniae , 2020, Nature Reviews Microbiology.
[12] Yongjun Wu,et al. Klebsiella pneumoniae: an increasing threat to public health , 2020, Annals of Clinical Microbiology and Antimicrobials.
[13] Wei Zhang,et al. Distribution of integrons and phylogenetic groups among highly virulent serotypes of Klebsiella pneumoniae in a Chinese tertiary hospital. , 2019, Journal of global antimicrobial resistance.
[14] K. Schønning,et al. Resistance to piperacillin/tazobactam in Escherichia coli resulting from extensive IS26-associated gene amplification of blaTEM-1. , 2019, The Journal of antimicrobial chemotherapy.
[15] N. Rodríguez-Medina,et al. Molecular epidemiology of Klebsiella variicola obtained from different sources , 2019, Scientific Reports.
[16] F. Firoozeh,et al. Molecular characterization of class 1, 2 and 3 integrons in clinical multi-drug resistant Klebsiella pneumoniae isolates , 2019, Antimicrobial resistance and infection control.
[17] N. Rodríguez-Medina,et al. Klebsiella variicola: an emerging pathogen in humans , 2019, Emerging microbes & infections.
[18] A. Phillippy,et al. High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries , 2018, Nature Communications.
[19] Qiyu Bao,et al. Characterisation of a class 1 integron associated with the formation of quadruple blaGES-5 cassettes from an IncP-1β group plasmid in Pseudomonas aeruginosa. , 2018, International journal of antimicrobial agents.
[20] K. Holt,et al. Klebsiella pneumoniae as a key trafficker of drug resistance genes from environmental to clinically important bacteria. , 2018, Current opinion in microbiology.
[21] S. Partridge,et al. Mobile Genetic Elements Associated with Antimicrobial Resistance , 2018, Clinical Microbiology Reviews.
[22] Haijian Zhou,et al. Whole genome sequence revealed the fine transmission map of carbapenem-resistant Klebsiella pneumonia isolates within a nosocomial outbreak , 2018, Antimicrobial Resistance & Infection Control.
[23] R. Martin,et al. Colonization, Infection, and the Accessory Genome of Klebsiella pneumoniae , 2018, Front. Cell. Infect. Microbiol..
[24] James J. Davis,et al. Whole-Genome Sequencing of Human Clinical Klebsiella pneumoniae Isolates Reveals Misidentification and Misunderstandings of Klebsiella pneumoniae, Klebsiella variicola, and Klebsiella quasipneumoniae , 2017, mSphere.
[25] D. van Duin,et al. The global epidemiology of carbapenemase-producing Enterobacteriaceae , 2017, Virulence.
[26] Alessandra Carattoli,et al. Klebsiella pneumoniae: a major worldwide source and shuttle for antibiotic resistance , 2017, FEMS microbiology reviews.
[27] S. Koren,et al. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation , 2016, bioRxiv.
[28] Shuai Chen,et al. Molecular characterisations of integrons in clinical isolates of Klebsiella pneumoniae in a Chinese tertiary hospital. , 2017, Microbial pathogenesis.
[29] Ryan R. Wick,et al. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads , 2016, bioRxiv.
[30] J. Mecsas,et al. Klebsiella pneumoniae: Going on the Offense with a Strong Defense , 2016, Microbiology and Molecular Reviews.
[31] Brian D. Ondov,et al. Mash: fast genome and metagenome distance estimation using MinHash , 2015, Genome Biology.
[32] Lei Chen,et al. Resistance integrons: class 1, 2 and 3 integrons , 2015, Annals of Clinical Microbiology and Antimicrobials.
[33] K. Nielsen,et al. Global dissemination patterns of common gene cassette arrays in class 1 integrons. , 2015, Microbiology.
[34] Jonathan Wilksch,et al. Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health , 2015, Proceedings of the National Academy of Sciences.
[35] Chao Xie,et al. Fast and sensitive protein alignment using DIAMOND , 2014, Nature Methods.
[36] Lei Shi,et al. Isolation and molecular characterization of multidrug-resistant Enterobacteriaceae strains from pork and environmental samples in Xiamen, China. , 2015, Journal of food protection.
[37] Christina A. Cuomo,et al. Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement , 2014, PloS one.
[38] Torsten Seemann,et al. Prokka: rapid prokaryotic genome annotation , 2014, Bioinform..
[39] O. Berg,et al. High fitness costs and instability of gene duplications reduce rates of evolution of new genes by duplication-divergence mechanisms. , 2014, Molecular biology and evolution.
[40] L. N. Andrade,et al. Expansion and Evolution of a Virulent, Extensively Drug-Resistant (Polymyxin B-Resistant), QnrS1-, CTX-M-2-, and KPC-2-Producing Klebsiella pneumoniae ST11 International High-Risk Clone , 2014, Journal of Clinical Microbiology.
[41] Robert J. Clifford,et al. Amplification of Aminoglycoside Resistance Gene aphA1 in Acinetobacter baumannii Results in Tobramycin Therapy Failure , 2014, mBio.
[42] F. Brayner,et al. Investigation of class 1 integrons in Klebsiella pneumoniae clinical and microbiota isolates belonging to different phylogenetic groups in Recife, State of Pernambuco. , 2014, Revista da Sociedade Brasileira de Medicina Tropical.
[43] Yongfei Hu,et al. Structural Diversity of Class 1 Integrons and Their Associated Gene Cassettes in Klebsiella pneumoniae Isolates from a Hospital in China , 2013, PloS one.
[44] K. Nielsen,et al. Integrons , 2012, Mobile Genetic Elements.
[45] Sergey I. Nikolenko,et al. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..
[46] M. Falagas,et al. Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance. , 2012, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
[47] A. Meyer,et al. Identification, expression, and characterization of a novel bacterial RGI lyase enzyme for the production of bio-functional fibers. , 2011, Enzyme and microbial technology.
[48] V. Dubois,et al. Duplication of the chromosomal blaSHV-11 gene in a clinical hypermutable strain of Klebsiella pneumoniae. , 2011, Microbiology.
[49] Mitchell J. Sullivan,et al. Easyfig: a genome comparison visualizer , 2011, Bioinform..
[50] V. González,et al. The blaSHV-5 gene is encoded in a compound transposon duplicated in tandem in Enterobacter cloacae. , 2009, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
[51] Linus Sandegren,et al. Bacterial gene amplification: implications for the evolution of antibiotic resistance , 2009, Nature Reviews Microbiology.
[52] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[53] António Correia,et al. INTEGRALL: a database and search engine for integrons, integrases and gene cassettes , 2009, Bioinform..
[54] P. Nordmann,et al. Multicopy blaOXA-58 Gene as a Source of High-Level Resistance to Carbapenems in Acinetobacter baumannii , 2007, Antimicrobial Agents and Chemotherapy.
[55] P. Vandamme,et al. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. , 2007, International journal of systematic and evolutionary microbiology.
[56] Didier Mazel,et al. Integrons: agents of bacterial evolution , 2006, Nature Reviews Microbiology.
[57] Patricia Siguier,et al. ISfinder: the reference centre for bacterial insertion sequences , 2005, Nucleic Acids Res..
[58] Sylvain Brisse,et al. Multilocus Sequence Typing of Klebsiella pneumoniae Nosocomial Isolates , 2005, Journal of Clinical Microbiology.
[59] J. Clarridge,et al. Impact of 16S rRNA Gene Sequence Analysis for Identification of Bacteria on Clinical Microbiology and Infectious Diseases , 2004, Clinical Microbiology Reviews.
[60] F. Schmitz,et al. Resistance integrons and super-integrons. , 2004, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
[61] J. Maurer,et al. Incidence of Class 1 and 2 Integrases in Clinical and Commensal Bacteria from Livestock, Companion Animals, and Exotics , 2001, Antimicrobial Agents and Chemotherapy.
[62] F. Schmitz,et al. Class 1 Integrons, Gene Cassettes, Mobility, and Epidemiology , 1999, European Journal of Clinical Microbiology and Infectious Diseases.
[63] R M Hall,et al. Mobile gene cassettes and integrons: capture and spread of genes by site‐specific recombination , 1995, Molecular microbiology.