The detection and characterization of pleiotropy: discovery, progress, and promise
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Dana C. Crawford | Sarah A. Pendergrass | Anna L. Tyler | S. Pendergrass | D. Crawford | Anna L. Tyler
[1] Luca Chiovato,et al. PAX8 mutations associated with congenital hypothyroidism caused by thyroid dysgenesis , 1998, Nature Genetics.
[2] Ahmed Mansouri,et al. Congenital hypothyroid Pax8(-/-) mutant mice can be rescued by inactivating the TRalpha gene. , 2002, Molecular endocrinology.
[3] Vaneet Lotay,et al. Can Genetic Pleiotropy Replicate Common Clinical Constellations of Cardiovascular Disease and Risk? , 2012, PloS one.
[4] Ewa Deelman,et al. Pleiotropy of Cancer Susceptibility Variants on the Risk of Non-Hodgkin Lymphoma: The PAGE Consortium , 2014, PloS one.
[5] Ayellet V. Segrè,et al. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis , 2010, Nature Genetics.
[6] Huaqin Pan,et al. Using PhenX measures to identify opportunities for cross‐study analysis , 2012, Human mutation.
[7] Christian Darabos,et al. Genome-wide epistasis and pleiotropy characterized by the bipartite human phenotype network. , 2015, Methods in molecular biology.
[8] Joseph Pratt,et al. Data compatibility in the addiction sciences: an examination of measure commonality. , 2014, Drug and alcohol dependence.
[9] Melissa A. Basford,et al. Genome- and Phenome-Wide Analyses of Cardiac Conduction Identifies Markers of Arrhythmia Risk , 2013, Circulation.
[10] Melissa A. Basford,et al. Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data , 2013, Nature Biotechnology.
[11] S. Purcell,et al. Pleiotropy in complex traits: challenges and strategies , 2013, Nature Reviews Genetics.
[12] Colin Campbell,et al. Canonical Correlation Analysis for Gene-Based Pleiotropy Discovery , 2014, PLoS Comput. Biol..
[13] Wei Lu,et al. CAPE: An R Package for Combined Analysis of Pleiotropy and Epistasis , 2013, PLoS Comput. Biol..
[14] A. Barabasi,et al. The human disease network , 2007, Proceedings of the National Academy of Sciences.
[15] G. Wagner,et al. The pleiotropic structure of the genotype–phenotype map: the evolvability of complex organisms , 2011, Nature Reviews Genetics.
[16] Eric Boerwinkle,et al. Pleiotropic genes for metabolic syndrome and inflammation. , 2014, Molecular genetics and metabolism.
[17] Damian Smedley,et al. Genome-wide Generation and Systematic Phenotyping of Knockout Mice Reveals New Roles for Many Genes , 2013, Cell.
[18] Manuel A. R. Ferreira,et al. Genetics and population analysis A multivariate test of association , 2009 .
[19] Marylyn D Ritchie,et al. Validation of PhenX measures in the personalized medicine research project for use in gene/environment studies , 2014, BMC Medical Genomics.
[20] Christopher G. Chute,et al. Evaluating Phenotypic Data Elements for Genetics and Epidemiological Research: Experiences from the eMERGE and PhenX Network Projects , 2011, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.
[21] Yusuke Nakamura,et al. Genome-wide association study for C-reactive protein levels identified pleiotropic associations in the IL6 locus. , 2011, Human molecular genetics.
[22] Qianchuan He,et al. A General Framework for Association Tests With Multivariate Traits in Large‐Scale Genomics Studies , 2013, Genetic epidemiology.
[23] Alexander A. Morgan,et al. Clinical assessment incorporating a personal genome , 2010, The Lancet.
[24] C D Shaffer,et al. The claret locus in Drosophila encodes products required for eyecolor and for meiotic chromosome segregation. , 1989, The EMBO journal.
[25] Robert J. Goodloe,et al. Pleiotropic effects of genetic risk variants for other cancers on colorectal cancer risk: PAGE, GECCO and CCFR consortia , 2013, Gut.
[26] Yi Zeng,et al. PhenX RISING: real world implementation and sharing of PhenX measures , 2014, BMC Medical Genomics.
[27] Wei Chen,et al. Pleiotropic Associations of Risk Variants Identified for Other Cancers With Lung Cancer Risk: The PAGE and TRICL Consortia , 2014, Journal of the National Cancer Institute.
[28] D. Featherstone,et al. Wrestling with pleiotropy: genomic and topological analysis of the yeast gene expression network. , 2002, BioEssays : news and reviews in molecular, cellular and developmental biology.
[29] Marylyn D. Ritchie,et al. Using BioBin to Explore Rare Variant Population Stratification , 2012, Pacific Symposium on Biocomputing.
[30] Gerard Tromp,et al. Phenome-Wide Association Study to Explore Relationships between Immune System Related Genetic Loci and Complex Traits and Diseases , 2016, PloS one.
[31] Steven J. Schrodi,et al. A PheWAS approach in studying HLA-DRB1*1501 , 2013, Genes and Immunity.
[32] Eric Farber-Eger,et al. Investigating the relationship between mitochondrial genetic variation and cardiovascular-related traits to develop a framework for mitochondrial phenome-wide association studies , 2014, BioData Mining.
[33] Theodore Chiang,et al. Unraveling the complex genetic model for cystic fibrosis: pleiotropic effects of modifier genes on early cystic fibrosis-related morbidities , 2013, Human Genetics.
[34] K. Goh,et al. Exploring the human diseasome: the human disease network. , 2012, Briefings in functional genomics.
[35] Klaus Zerres,et al. Identification of a candidate modifying gene for spinal muscular atrophy by comparative genomics , 1998, Nature Genetics.
[36] William Valdar,et al. Quantitative trait loci for energy balance traits in an advanced intercross line derived from mice divergently selected for heat loss , 2014, PeerJ.
[37] Harvey Risch,et al. Cross-cancer pleiotropic analysis of endometrial cancer: PAGE and E2C2 consortia. , 2014, Carcinogenesis.
[38] F. Agakov,et al. Abundant pleiotropy in human complex diseases and traits. , 2011, American journal of human genetics.
[39] A. Zhernakova,et al. Detecting shared pathogenesis from the shared genetics of immune-related diseases , 2009, Nature Reviews Genetics.
[40] Supriyo De,et al. Genome-wide modeling of complex phenotypes in Caenorhabditis elegans and Drosophila melanogaster , 2013, BMC Genomics.
[41] Jianzhi Zhang,et al. Genomic patterns of pleiotropy and the evolution of complexity , 2010, Proceedings of the National Academy of Sciences.
[42] Marylyn D. Ritchie,et al. Phenome-Wide Association Study (PheWAS) for Detection of Pleiotropy within the Population Architecture using Genomics and Epidemiology (PAGE) Network , 2013, PLoS genetics.
[43] M. Ritchie,et al. Phenome-Wide Association Studies: Leveraging Comprehensive Phenotypic and Genotypic Data for Discovery , 2015, Current Genetic Medicine Reports.
[44] Frank W. Stearns. One Hundred Years of Pleiotropy: A Retrospective , 2010, Genetics.
[45] Qunyuan Zhang,et al. Estimating and Testing Pleiotropy of Single Genetic Variant for Two Quantitative Traits , 2014, Genetic epidemiology.
[46] William S. Bush,et al. Putting Pleiotropy and Selection Into Context Defines a New Paradigm for Interpreting Genetic Data , 2013, Circulation. Cardiovascular genetics.
[47] Donald A. Barkauskas,et al. Abstract 4352: Systemic levels of neuropeptide Y are elevated in Ewing's sarcoma patients , 2011 .
[48] J. Haines,et al. eMERGEing progress in genomics—the first seven years , 2014, Front. Genet..
[49] Christian Darabos,et al. Using the Bipartite Human Phenotype Network to Reveal Pleiotropy and Epistasis Beyond the Gene , 2014, Pacific Symposium on Biocomputing.
[50] J. Hodgkin,et al. Seven types of pleiotropy. , 1998, The International journal of developmental biology.
[51] Carol M Hamilton,et al. PhenX: a toolkit for interdisciplinary genetics research , 2010, Current opinion in lipidology.
[52] Giovanni Romeo,et al. Phenotypic diversity, allelic series and modifier genes , 1994, Nature Genetics.
[53] F. Collins,et al. Potential etiologic and functional implications of genome-wide association loci for human diseases and traits , 2009, Proceedings of the National Academy of Sciences.
[54] Andrew P. Read,et al. Waardenburg syndrome type 2 caused by mutations in the human microphthalmia (MITF) gene , 1994, Nature Genetics.
[55] Michelle Hays,et al. Use of Pleiotropy to Model Genetic Interactions in a Population , 2012, PLoS genetics.
[56] C. Sing,et al. Role of the apolipoprotein E polymorphism in determining normal plasma lipid and lipoprotein variation. , 1985, American journal of human genetics.
[57] Christopher G. Chute,et al. A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects , 2013, Human Genetics.
[58] F. A. van Eeuwijk,et al. Multi-trait and multi-environment QTL analyses of yield and a set of physiological traits in pepper , 2013, Theoretical and Applied Genetics.
[59] Jie Huang,et al. PRIMe: a method for characterization and evaluation of pleiotropic regions from multiple genome-wide association studies , 2011, Bioinform..
[60] S. Omholt,et al. Phenomics: the next challenge , 2010, Nature Reviews Genetics.
[61] Anna L. Tyler,et al. Dissection of Complex Gene Expression Using the Combined Analysis of Pleiotropy and Epistasis , 2014, Pacific Symposium on Biocomputing.
[62] C. Carlson,et al. The Next PAGE in Understanding Complex Traits: Design for the Analysis of Population Architecture Using Genetics and Epidemiology (PAGE) Study , 2011, American journal of epidemiology.
[63] Scott M. Williams,et al. Shadows of complexity: what biological networks reveal about epistasis and pleiotropy , 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.
[64] Zhan Ye,et al. Phenome-wide association studies (PheWASs) for functional variants , 2014, European Journal of Human Genetics.
[65] Arne Ludwig,et al. Pleiotropic effects of coat colour-associated mutations in humans, mice and other mammals. , 2013, Seminars in cell & developmental biology.
[66] Peter Szolovits,et al. Associations of autoantibodies, autoimmune risk alleles, and clinical diagnoses from the electronic medical records in rheumatoid arthritis cases and non-rheumatoid arthritis controls. , 2013, Arthritis and rheumatism.
[67] J. Milbrandt,et al. Sensory ataxia and muscle spindle agenesis in mice lacking the transcription factor Egr3 , 1998, Nature Genetics.
[68] Melissa A. Basford,et al. Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies. , 2011, American journal of human genetics.
[69] Gregory W. Carter,et al. A Genetic Interaction Network Model of a Complex Neurological Disease , 2014, Genes, brain, and behavior.
[70] Xihong Lin,et al. Rare-variant association testing for sequencing data with the sequence kernel association test. , 2011, American journal of human genetics.
[71] Stephen F. Chenoweth,et al. The Nature and Extent of Mutational Pleiotropy in Gene Expression of Male Drosophila serrata , 2014, Genetics.
[72] Marylyn D. Ritchie,et al. Detection of Pleiotropy through a Phenome-Wide Association Study (PheWAS) of Epidemiologic Data as Part of the Environmental Architecture for Genes Linked to Environment (EAGLE) Study , 2014, PLoS genetics.
[73] Zhen Liu,et al. Identifying disease associations via genome-wide association studies , 2009, BMC Bioinformatics.
[74] C Kooperberg,et al. The use of phenome‐wide association studies (PheWAS) for exploration of novel genotype‐phenotype relationships and pleiotropy discovery , 2011, Genetic epidemiology.
[75] Jun Chen,et al. Endostatin and kidney fibrosis in aging: a case for antagonistic pleiotropy? , 2014, American journal of physiology. Heart and circulatory physiology.
[76] Christian Darabos,et al. The multiscale backbone of the human phenotype network based on biological pathways , 2014, BioData Mining.
[77] Nathan Ravi,et al. A Knock-In Mouse Model for the R120G Mutation of αB-Crystallin Recapitulates Human Hereditary Myopathy and Cataracts , 2011, PloS one.
[78] Ellen M. Wijsman,et al. The Apolipoprotein E E4 Allele and Sex-Specific Risk of Alzheimer's Disease , 1995 .
[79] Ahmed Mansouri,et al. Follicular cells of the thyroid gland require Pax8 gene function , 1998, Nature Genetics.
[80] Dana C. Crawford,et al. Association of Cancer Susceptibility Variants with Risk of Multiple Primary Cancers: The Population Architecture using Genomics and Epidemiology Study , 2014, Cancer Epidemiology, Biomarkers & Prevention.
[81] B. Pierce,et al. Genome-wide "pleiotropy scan" identifies HNF1A region as a novel pancreatic cancer susceptibility locus. , 2011, Cancer research.
[82] A. Jegga,et al. Genome‐wide association mapping of natural variation in odour‐guided behaviour in Drosophila , 2013, Genes, brain, and behavior.
[83] M. Polak,et al. PAX8, TITF1, and FOXE1 gene expression patterns during human development: new insights into human thyroid development and thyroid dysgenesis-associated malformations. , 2005, The Journal of clinical endocrinology and metabolism.
[84] Chun-Nan Hsu,et al. Analysis of Metabolic Syndrome Components in >15 000 African Americans Identifies Pleiotropic Variants: Results From the Population Architecture Using Genomics and Epidemiology Study , 2014, Circulation. Cardiovascular genetics.
[85] Marylyn D Ritchie,et al. BioBin: a bioinformatics tool for automating the binning of rare variants using publicly available biological knowledge , 2013, BMC Medical Genomics.
[86] J. Barrett,et al. New IBD genetics: common pathways with other diseases , 2011, Gut.
[87] Keith Marsolo,et al. Phenome-wide association study (PheWAS) in EMR-linked pediatric cohorts, genetically links PLCL1 to speech language development and IL5-IL13 to Eosinophilic Esophagitis , 2014, Front. Genet..
[88] Ursula Mittwoch,et al. Developmental genetics and lethal factors , 1961 .