Enhanced stochastic oscillations in autocatalytic reactions.

We study a simplified scheme of k coupled autocatalytic reactions, previously introduced by Togashi and Kaneko. The role of stochastic fluctuations is elucidated through the use of the van Kampen system-size expansion and the results compared with direct stochastic simulations. Regular temporal oscillations are predicted to occur for the concentration of the various chemical constituents, with an enhanced amplitude resulting from a resonance which is induced by the intrinsic graininess of the system. The associated power spectra are determined and have a different form depending on the number of chemical constituents k . We make detailed comparisons in the two cases k=4 and k=8 . Agreement between the theoretical and numerical results for the power spectrum is good in both cases. The resulting spectrum is especially interesting in the k=8 system, since it has two peaks, which the system-size expansion is still able to reproduce accurately.

[1]  D. Gillespie Exact Stochastic Simulation of Coupled Chemical Reactions , 1977 .

[2]  D. Gillespie A General Method for Numerically Simulating the Stochastic Time Evolution of Coupled Chemical Reactions , 1976 .

[3]  A J McKane,et al.  Predator-prey cycles from resonant amplification of demographic stochasticity. , 2005, Physical review letters.

[4]  D. Sherrington Stochastic Processes in Physics and Chemistry , 1983 .

[5]  S. Kauffman Autocatalytic sets of proteins. , 1986 .

[6]  F. Dyson Origins of Life: Open Questions , 1985 .

[7]  Richard Bellman,et al.  Introduction to Matrix Analysis , 1972 .

[8]  Stuart A. Kauffman,et al.  ORIGINS OF ORDER , 2019, Origins of Order.

[9]  K. Kaneko,et al.  Alteration of Chemical Concentrations through Discreteness-Induced Transitions in Small Autocatalytic Systems , 2001, physics/0109064.

[10]  K. Kaneko,et al.  Transitions induced by the discreteness of molecules in a small autocatalytic system. , 2000, Physical review letters.

[11]  N. Kampen,et al.  Stochastic processes in physics and chemistry , 1981 .

[12]  A J McKane,et al.  Stochastic models in population biology and their deterministic analogs. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

[13]  C. Gardiner Handbook of Stochastic Methods , 1983 .

[14]  Sanjay Jain,et al.  Autocatalytic sets and the growth of complexity in an evolutionary model , 1998, adap-org/9809003.

[15]  P. Gray,et al.  Sustained oscillations and other exotic patterns of behavior in isothermal reactions , 1985 .

[16]  S. Sharma,et al.  The Fokker-Planck Equation , 2010 .

[17]  W. Gurney,et al.  Modelling fluctuating populations , 1982 .

[18]  H. Risken,et al.  The Fokker-Planck Equation: Methods of Solution and Application, 2nd ed. , 1991 .

[19]  William Gurney,et al.  Modelling fluctuating populations , 1982 .

[20]  G. Wächtershäuser,et al.  Evolution of the first metabolic cycles. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[21]  M. Bartlett Measles Periodicity and Community Size , 1957 .

[22]  M. Pascual,et al.  Stochastic amplification in epidemics , 2007, Journal of The Royal Society Interface.

[23]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.

[24]  A. McKane,et al.  Amplified Biochemical Oscillations in Cellular Systems , 2006, q-bio/0604001.