Molecular evolution of the pathogen recognition peptidoglycan proteins regulates the immune response against infectious diseases in Drosophila melanogaster
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F. Saleem | G. Kumar | D. Ali | Abdur Rahman | M. Essa | Zubia Zafar | Muhammad Ehsan Khalid | Afifa Zafar | Hafiz Ishfaq Ahmad | Akhtar Rasool Asif | Syed Aun Muhammad | Maryam Raana | Mohammed H. A. Almarzoug
[1] Caiti Smukowski Heil. Loss of Heterozygosity and Its Importance in Evolution , 2023, Journal of Molecular Evolution.
[2] Lei Chen,et al. Comparison and Phylogenetic Analysis of Mitochondrial Genomes of Talpidae Animals , 2023, Animals : an open access journal from MDPI.
[3] H. I. Ahmad,et al. Molecular Evolution of the Bactericidal/Permeability-Increasing Protein (BPIFA1) Regulating the Innate Immune Responses in Mammals , 2022, Genes.
[4] Fengsong Liu,et al. Peptidoglycan recognition protein SC (PGRP‐SC) shapes gut microbiota richness, diversity and composition by modulating immunity in the house fly Musca domestica , 2022, Insect molecular biology.
[5] G. Afzal,et al. Structural and Evolutionary Adaptations of Nei-Like DNA Glycosylases Proteins Involved in Base Excision Repair of Oxidative DNA Damage in Vertebrates , 2022, Oxidative medicine and cellular longevity.
[6] Muhammad Nouman Iqbal,et al. Positive Selection Drives the Adaptive Evolution of Mitochondrial Antiviral Signaling (MAVS) Proteins-Mediating Innate Immunity in Mammals , 2022, Frontiers in Veterinary Science.
[7] Da-Wei Huang,et al. Genome-Wide Analysis of Gene Families of Pattern Recognition Receptors in Fig Wasps (Hymenoptera, Chalcidoidea) , 2021, Genes.
[8] E. Demir. Mechanisms and biological impacts of graphene and multi‐walled carbon nanotubes on Drosophila melanogaster: Oxidative stress, genotoxic damage, phenotypic variations, locomotor behavior, parasitoid resistance, and cellular immune response , 2021, Journal of applied toxicology : JAT.
[9] Eric W. Bell,et al. Folding non-homologous proteins by coupling deep-learning contact maps with I-TASSER assembly simulations , 2021, Cell reports methods.
[10] Muhammad Jamil Ahmad,et al. Adaptive evolution of peptidoglycan recognition protein family regulates the innate signaling against microbial pathogens in vertebrates. , 2020, Microbial pathogenesis.
[11] Zhenguo Du,et al. EasyCodeML: A visual tool for analysis of selection using CodeML , 2019, Ecology and evolution.
[12] Xiaoyong Liu,et al. Peptidoglycan recognition proteins in insect immunity. , 2019, Molecular immunology.
[13] H. Robertson. Molecular Evolution of the Major Arthropod Chemoreceptor Gene Families. , 2019, Annual review of entomology.
[14] Torsten Schwede,et al. SWISS-MODEL: homology modelling of protein structures and complexes , 2018, Nucleic Acids Res..
[15] Steven Weaver,et al. Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes. , 2018, Molecular biology and evolution.
[16] I. Eleftherianos,et al. Evolution and Function of Thioester-Containing Proteins and the Complement System in the Innate Immune Response , 2017, Front. Immunol..
[17] P. Smialowski,et al. The Drosophila speciation factor HMR localizes to genomic insulator sites , 2017, PloS one.
[18] Georgios K. Georgakilas,et al. The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species , 2016, Genome Biology.
[19] Joseph P Bielawski,et al. Inference of Episodic Changes in Natural Selection Acting on Protein Coding Sequences via CODEML , 2016, Current protocols in bioinformatics.
[20] Itay Mayrose,et al. ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules , 2016, Nucleic Acids Res..
[21] A. Fijarczyk,et al. Detecting balancing selection in genomes: limits and prospects , 2015, Molecular ecology.
[22] M. Jaeger,et al. Genetic variation in pattern recognition receptors: functional consequences and susceptibility to infectious disease. , 2015, Future microbiology.
[23] Koichiro Tamura,et al. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.
[24] Itay Mayrose,et al. ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function , 2013 .
[25] Sergei L. Kosakovsky Pond,et al. FUBAR: a fast, unconstrained bayesian approximation for inferring selection. , 2013, Molecular biology and evolution.
[26] F. Casey,et al. Predictive modelling of angiotensin converting enzyme inhibitory dipeptides , 2012 .
[27] I. Eleftherianos,et al. Molecular Mechanisms of Aging and Immune System Regulation in Drosophila , 2012, International journal of molecular sciences.
[28] Sergei L. Kosakovsky Pond,et al. Detecting Individual Sites Subject to Episodic Diversifying Selection , 2012, PLoS genetics.
[29] Roman A. Laskowski,et al. LigPlot+: Multiple Ligand-Protein Interaction Diagrams for Drug Discovery , 2011, J. Chem. Inf. Model..
[30] N. Takahata,et al. Evolutionary origin of peptidoglycan recognition proteins in vertebrate innate immune system , 2011, BMC Evolutionary Biology.
[31] S. Akira,et al. Pathogen Recognition by the Innate Immune System , 2011, International reviews of immunology.
[32] J. Welch,et al. Quantifying Adaptive Evolution in the Drosophila Immune System , 2009, PLoS genetics.
[33] Zhan Zhou,et al. The rapid evolution of signal peptides is mainly caused by relaxed selection on non-synonymous and synonymous sites. , 2009, Gene.
[34] S. Paludan,et al. Innate recognition of intracellular pathogens: detection and activation of the first line of defense , 2009, APMIS : acta pathologica, microbiologica, et immunologica Scandinavica.
[35] T. Mogensen. Pathogen Recognition and Inflammatory Signaling in Innate Immune Defenses , 2009, Clinical Microbiology Reviews.
[36] Konrad Scheffler,et al. Models of coding sequence evolution , 2008, Briefings Bioinform..
[37] Nir Ben-Tal,et al. The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures , 2008, Nucleic Acids Res..
[38] David Osumi-Sutherland,et al. FlyBase: enhancing Drosophila Gene Ontology annotations , 2008, Nucleic Acids Res..
[39] Austin L. Hughes,et al. Codon-based tests of positive selection, branch lengths, and the evolution of mammalian immune system genes , 2008, Immunogenetics.
[40] B. Lazzaro. Natural selection on the Drosophila antimicrobial immune system. , 2008, Current opinion in microbiology.
[41] Timothy B Sackton,et al. Mutations in smooth muscle α-actin (ACTA2) lead to thoracic aortic aneurysms and dissections , 2007, Nature Genetics.
[42] Ziheng Yang. PAML 4: phylogenetic analysis by maximum likelihood. , 2007, Molecular biology and evolution.
[43] Itay Mayrose,et al. Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates , 2007, ISMB/ECCB.
[44] Adi Doron-Faigenboim,et al. Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach , 2007, Nucleic Acids Res..
[45] Y. Ip,et al. Toll and IMD Pathways Synergistically Activate an Innate Immune Response in Drosophila melanogaster , 2007, Molecular and Cellular Biology.
[46] B. Lemaître,et al. The host defense of Drosophila melanogaster. , 2007, Annual review of immunology.
[47] Jeffery P. Demuth,et al. The Evolution of Mammalian Gene Families , 2006, PloS one.
[48] Sagi Snir,et al. Maximum likelihood of phylogenetic networks , 2006, Bioinform..
[49] David Posada,et al. Automated phylogenetic detection of recombination using a genetic algorithm. , 2006, Molecular biology and evolution.
[50] B. Oh,et al. The Drosophila amidase PGRP-LB modulates the immune response to bacterial infection. , 2006, Immunity.
[51] Y. Ip,et al. Regulators of the Toll and Imd pathways in the Drosophila innate immune response. , 2005, Trends in immunology.
[52] W. Wong,et al. Bayes empirical bayes inference of amino acid sites under positive selection. , 2005, Molecular biology and evolution.
[53] Sergei L. Kosakovsky Pond,et al. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments , 2005, Bioinform..
[54] Jeroen Raes,et al. Duplication and divergence: the evolution of new genes and old ideas. , 2004, Annual review of genetics.
[55] Robert C. Edgar,et al. MUSCLE: a multiple sequence alignment method with reduced time and space complexity , 2004, BMC Bioinformatics.
[56] J. Reichhart,et al. The immune response of Drosophila melanogaster , 2004, Immunological reviews.
[57] H. Steiner. Peptidoglycan recognition proteins: on and off switches for innate immunity , 2004, Immunological reviews.
[58] O. Gascuel,et al. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.
[59] Jianzhi Zhang. Evolution by gene duplication: an update , 2003 .
[60] Inna Dubchak,et al. Comparative genomics approaches to study organism similarities and differences , 2002, J. Biomed. Informatics.
[61] A Vignal,et al. Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds. , 2001, Genetics.
[62] F. Ausubel,et al. A simple model host for identifying Gram-positive virulence factors , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[63] D. Kell,et al. The Kyoto Encyclopedia of Genes and Genomes—KEGG , 2000, Yeast.
[64] R. Russell,et al. Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution. , 1998, Journal of molecular biology.
[65] R. Nielsen,et al. Synonymous and nonsynonymous rate variation in nuclear genes of mammals , 1998, Journal of Molecular Evolution.
[66] Yuzhen Lu,et al. Pattern recognition receptors in Drosophila immune responses. , 2019, Developmental and comparative immunology.
[67] Haruki Nakamura,et al. Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive. , 2017, Methods in molecular biology.
[68] S. Kurata. Peptidoglycan recognition proteins in Drosophila immunity. , 2014, Developmental and comparative immunology.
[69] W. Swanson,et al. Evolution of reproductive proteins from animals and plants. , 2006, Reproduction.
[70] Thomas Hankeln,et al. A globin gene of ancient evolutionary origin in lower vertebrates: evidence for two distinct globin families in animals. , 2005, Molecular biology and evolution.
[71] Tal Pupko,et al. Structural Genomics , 2005 .