A Critical Reassessment of the Role of Mitochondria in Tumorigenesis

Background Mitochondrial DNA (mtDNA) is being analyzed by an increasing number of laboratories in order to investigate its potential role as an active marker of tumorigenesis in various types of cancer. Here we question the conclusions drawn in most of these investigations, especially those published in high-rank cancer research journals, under the evidence that a significant number of these medical mtDNA studies are based on obviously flawed sequencing results. Methods and Findings In our analyses, we take a phylogenetic approach and employ thorough database searches, which together have proven successful for detecting erroneous sequences in the fields of human population genetics and forensics. Apart from conceptual problems concerning the interpretation of mtDNA variation in tumorigenesis, in most cases, blocks of seemingly somatic mutations clearly point to contamination or sample mix-up and, therefore, have nothing to do with tumorigenesis. Conclusion The role of mitochondria in tumorigenesis remains unclarified. Our findings of laboratory errors in many contributions would represent only the tip of the iceberg since most published studies do not provide the raw sequence data for inspection, thus hindering a posteriori evaluation of the results. There is no precedent for such a concatenation of errors and misconceptions affecting a whole subfield of medical research.

[1]  Hans-Jürgen Bandelt,et al.  A call for mtDNA data quality control in forensic science. , 2004, Forensic science international.

[2]  Q. Kong,et al.  Different matrilineal contributions to genetic structure of ethnic groups in the silk road region in china. , 2004, Molecular biology and evolution.

[3]  Á. Carracedo,et al.  The making of the African mtDNA landscape. , 2002, American journal of human genetics.

[4]  T. Parsons,et al.  Single nucleotide polymorphisms over the entire mtDNA genome that increase the power of forensic testing in Caucasians , 2004, International Journal of Legal Medicine.

[5]  Hans-Jürgen Bandelt,et al.  Phylogeny of east Asian mitochondrial DNA lineages inferred from complete sequences. , 2003, American journal of human genetics.

[6]  Hans-Jürgen Bandelt,et al.  Problems in FBI mtDNA Database , 2004, Science.

[7]  B. Green,et al.  Simultaneous generation of multiple mitochondrial DNA mutations in human prostate tumors suggests mitochondrial hyper-mutagenesis. , 2003, Carcinogenesis.

[8]  H. Vogel,et al.  Detection of mitochondrial DNA mutations in the tumor and cerebrospinal fluid of medulloblastoma patients. , 2003, Cancer research.

[9]  Á. Carracedo,et al.  Heteroplasmy in mtDNA and the weight of evidence in forensic mtDNA analysis: a case report , 2001, International Journal of Legal Medicine.

[10]  T. Kivisild,et al.  Phylogeographic differentiation of mitochondrial DNA in Han Chinese. , 2002, American journal of human genetics.

[11]  M. Alexander To Err is Human. , 2006, Journal of infusion nursing : the official publication of the Infusion Nurses Society.

[12]  Hans-Jürgen Bandelt,et al.  Phylogeny of mitochondrial DNA macrohaplogroup N in India, based on complete sequencing: implications for the peopling of South Asia. , 2004, American journal of human genetics.

[13]  D. Hochhauser Relevance of mitochondrial DNA in cancer , 2000, The Lancet.

[14]  A. Tamori,et al.  Somatic mutation of mitochondrial DNA in cancerous and noncancerous liver tissue in individuals with hepatocellular carcinoma. , 2001, Cancer research.

[15]  S. Nomoto,et al.  Mitochondrial mutations in early stage prostate cancer and bodily fluids , 2001, Oncogene.

[16]  F. Sanger,et al.  Sequence and organization of the human mitochondrial genome , 1981, Nature.

[17]  A. Cheung,et al.  High incidence of somatic mitochondrial DNA mutations in human ovarian carcinomas. , 2001, Cancer research.

[18]  Q. Kong,et al.  Low "penetrance" of phylogenetic knowledge in mitochondrial disease studies. , 2005, Biochemical and biophysical research communications.

[19]  E. Hagelberg,et al.  Evidence for mitochondrial DNA recombination in a human population of island Melanesia , 1999, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[20]  K. Lunetta,et al.  Somatic mitochondrial DNA (mtDNA) mutations in papillary thyroid carcinomas and differential mtDNA sequence variants in cases with thyroid tumours , 2000, Oncogene.

[21]  S. Weis,et al.  High frequency of mitochondrial DNA mutations in glioblastoma multiforme identified by direct sequence comparison to blood samples , 2001, International journal of cancer.

[22]  Bert Vogelstein,et al.  Somatic mutations of the mitochondrial genome in human colorectal tumours , 1998, Nature Genetics.

[23]  D. Turnbull,et al.  Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA , 1999, Nature Genetics.

[24]  H. Bandelt,et al.  Saami and Berbers--an unexpected mitochondrial DNA link. , 2005, American journal of human genetics.

[25]  Á. Carracedo,et al.  mtDNA mutations in tumors of the central nervous system reflect the neutral evolution of mtDNA in populations , 2004, Oncogene.

[26]  H. Bandelt,et al.  The fingerprint of phantom mutations in mitochondrial DNA data. , 2002, American journal of human genetics.

[27]  Mark R. Wilson,et al.  The mtDNA Population Database: An Integrated Software and Database Resource for Forensic Comparison , 2002 .

[28]  About the "Pathological" role of the mtDNA T3308C mutationellipsis. , 1999, American journal of human genetics.

[29]  W Parson,et al.  Results of a collaborative study of the EDNAP group regarding mitochondrial DNA heteroplasmy and segregation in hair shafts. , 2004, Forensic science international.

[30]  K. Yeh,et al.  Molecular alterations in mitochondrial DNA of hepatocellular carcinomas: is there a correlation with clinicopathological profile? , 2004, Journal of Medical Genetics.

[31]  John A. Hall,et al.  mtDNA mutations increase tumorigenicity in prostate cancer. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[32]  N. Howell,et al.  Errors, phantoms and otherwise, in human mtDNA sequences. , 2003, American journal of human genetics.

[33]  H. Bandelt,et al.  Detecting errors in mtDNA data by phylogenetic analysis , 2001, International Journal of Legal Medicine.

[34]  B. Sykes,et al.  Phylogeography of mitochondrial DNA in western Europe , 1998, Annals of human genetics.

[35]  N. Hu,et al.  Control region mutations and the 'common deletion' are frequent in the mitochondrial DNA of patients with esophageal squamous cell carcinoma , 2004, BMC Cancer.

[36]  G. Saberwal,et al.  Increased incidence of mitochondrial cytochrome c‐oxidase gene mutations in patients with myelodysplastic syndromes , 2002, British journal of haematology.

[37]  S. Pääbo,et al.  Mitochondrial genome variation and the origin of modern humans , 2000, Nature.

[38]  D. Turnbull,et al.  Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups. , 2002, American journal of human genetics.

[39]  D. Turnbull,et al.  Accumulation of mitochondrial DNA mutations in ageing, cancer, and mitochondrial disease: is there a common mechanism? , 2002, The Lancet.

[40]  T. Kivisild,et al.  Mitochondrial genes and schizophrenia , 2005, Schizophrenia Research.

[41]  A. Nakao,et al.  Mitochondrial DNA alteration in esophageal cancer , 2001, International journal of cancer.

[42]  A. Nakao,et al.  Detection of mitochondrial DNA alterations in primary tumors and corresponding serum of colorectal cancer patients , 2001, International journal of cancer.

[43]  Hans-Jürgen Bandelt,et al.  The emerging limbs and twigs of the East Asian mtDNA tree. , 2002, Molecular biology and evolution.

[44]  A. Salas,et al.  Artificial recombination in forensic mtDNA population databases , 2004, International Journal of Legal Medicine.

[45]  H. Coller,et al.  Mitochondrial mutational spectra in human cells and tissues. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[46]  J. Jen,et al.  Facile detection of mitochondrial DNA mutations in tumors and bodily fluids. , 2000, Science.

[47]  Junjian Z. Chen,et al.  Extensive somatic mitochondrial mutations in primary prostate cancer using laser capture microdissection. , 2002, Cancer research.

[48]  T. Kivisild,et al.  To trust or not to trust an idiosyncratic mitochondrial data set. , 2003, American journal of human genetics.

[49]  H. Poinar,et al.  Ancient DNA: Do It Right or Not at All , 2000, Science.

[50]  Q. Kong,et al.  Phylogeographic analysis of mitochondrial DNA haplogroup F2 in China reveals T12338C in the initiation codon of the ND5 gene not to be pathogenic , 2004, Journal of Human Genetics.

[51]  M. Zeviani,et al.  The molecular dissection of mtDNA haplogroup H confirms that the Franco-Cantabrian glacial refuge was a major source for the European gene pool. , 2004, American journal of human genetics.