A Hydrophobic Gold Surface Triggers Misfolding and Aggregation of the Amyloidogenic Josephin Domain in Monomeric Form, While Leaving the Oligomers Unaffected

Protein misfolding and aggregation in intracellular and extracellular spaces is regarded as a main marker of the presence of degenerative disorders such as amyloidoses. To elucidate the mechanisms of protein misfolding, the interaction of proteins with inorganic surfaces is of particular relevance, since surfaces displaying different wettability properties may represent model systems of the cell membrane. Here, we unveil the role of surface hydrophobicity/hydrophilicity in the misfolding of the Josephin domain (JD), a globular-shaped domain of ataxin-3, the protein responsible for the spinocerebellar ataxia type 3. By means of a combined experimental and theoretical approach based on atomic force microscopy, Fourier transform infrared spectroscopy and molecular dynamics simulations, we reveal changes in JD morphology and secondary structure elicited by the interaction with the hydrophobic gold substrate, but not by the hydrophilic mica. Our results demonstrate that the interaction with the gold surface triggers misfolding of the JD when it is in native-like configuration, while no structural modification is observed after the protein has undergone oligomerization. This raises the possibility that biological membranes would be unable to affect amyloid oligomeric structures and toxicity.

[1]  M. Stefani,et al.  Protein Folding and Misfolding on Surfaces , 2008, International journal of molecular sciences.

[2]  E. Foresti,et al.  Adsorption of human serum albumin on the chrysotile surface: a molecular dynamics and spectroscopic investigation , 2008, Journal of The Royal Society Interface.

[3]  Georges Belfort,et al.  Protein structural perturbation and aggregation on homogeneous surfaces. , 2005, Biophysical journal.

[4]  P. Lansbury,et al.  Vesicle permeabilization by protofibrillar alpha-synuclein: implications for the pathogenesis and treatment of Parkinson's disease. , 2001, Biochemistry.

[5]  Alessandra Gliozzi,et al.  A Major Role for Side-Chain Polyglutamine Hydrogen Bonding in Irreversible Ataxin-3 Aggregation , 2011, PloS one.

[6]  Stephen P Bottomley,et al.  The Two-stage Pathway of Ataxin-3 Fibrillogenesis Involves a Polyglutamine-independent Step* , 2006, Journal of Biological Chemistry.

[7]  Stefano Corni,et al.  GolP: An atomistic force‐field to describe the interaction of proteins with Au(111) surfaces in water , 2009, J. Comput. Chem..

[8]  H. Saibil,et al.  Structural diversity of ex vivo amyloid fibrils studied by cryo-electron microscopy. , 2001, Journal of molecular biology.

[9]  M. Stefani,et al.  Biochemical and biophysical features of both oligomer/fibril and cell membrane in amyloid cytotoxicity , 2010, The FEBS journal.

[10]  A. Redaelli,et al.  Tubulin: from atomistic structure to supramolecular mechanical properties , 2007 .

[11]  Giuseppe Nicastro,et al.  The solution structure of the Josephin domain of ataxin-3: structural determinants for molecular recognition. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[12]  Giuseppe Nicastro,et al.  Characterization of the structure and the amyloidogenic properties of the Josephin domain of the polyglutamine-containing protein ataxin-3. , 2004, Journal of molecular biology.

[13]  Temperature profoundly affects ataxin-3 fibrillogenesis. , 2012, Biochimie.

[14]  D. Holtzman,et al.  In situ atomic force microscopy study of Alzheimer’s β-amyloid peptide on different substrates: New insights into mechanism of β-sheet formation , 1999 .

[15]  C. Dobson,et al.  Membrane lipid composition and its physicochemical properties define cell vulnerability to aberrant protein oligomers , 2012, Journal of Cell Science.

[16]  Masino Laura,et al.  Functional interactions as a survival strategy against abnormal aggregation , 2011, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[17]  Ricardo Garcia,et al.  Dynamic atomic force microscopy methods , 2002 .

[18]  Alberto Redaelli,et al.  Mechanical response and conformational changes of alpha-actinin domains during unfolding: a molecular dynamics study , 2007, Biomechanics and modeling in mechanobiology.

[19]  C. Odin,et al.  Tip's finite size effects on atomic force microscopy in the contact mode: simple geometrical considerations for rapid estimation of apex radius and tip angle based on the study of polystyrene latex balls , 1994 .

[20]  Martin Hegner,et al.  Ultralarge atomically flat template-stripped Au surfaces for scanning probe microscopy , 1993 .

[21]  Hendrik Heinz,et al.  Computational screening of biomolecular adsorption and self‐assembly on nanoscale surfaces , 2009, J. Comput. Chem..

[22]  Giuseppe Nicastro,et al.  The Josephin domain determines the morphological and mechanical properties of ataxin-3 fibrils. , 2011, Biophysical journal.

[23]  Martin J. Scanlon,et al.  Small heat-shock proteins interact with a flanking domain to suppress polyglutamine aggregation , 2010, Proceedings of the National Academy of Sciences.

[24]  G. Nicastro,et al.  Solution structure of the Josephin domain of Ataxin-3 , 2005 .

[25]  Stephen P Bottomley,et al.  Mechanisms of ataxin-3 misfolding and fibril formation: kinetic analysis of a disease-associated polyglutamine protein. , 2007, Journal of molecular biology.

[26]  F. Goñi,et al.  Structure and dynamics of membrane proteins as studied by infrared spectroscopy. , 1999, Progress in biophysics and molecular biology.

[27]  W. V. Gunsteren,et al.  Validation of the 53A6 GROMOS force field , 2005, European Biophysics Journal.

[28]  And J. Sklansky,et al.  Correlation of beta-amyloid aggregate size and hydrophobicity with decreased bilayer fluidity of model membranes. , 2000, Biochemistry.

[29]  M Karplus,et al.  Theoretical studies of protein folding and unfolding. , 1995, Current opinion in structural biology.

[30]  Jeff Kuret,et al.  Rapid Anionic Micelle-mediated α-Synuclein Fibrillization in Vitro* , 2003, Journal of Biological Chemistry.

[31]  David,et al.  In situ atomic force microscopy study of Alzheimer’s b-amyloid peptide on different substrates: New insights into mechanism of b-sheet formation , 1999 .

[32]  Nagel,et al.  Contact line deposits in an evaporating drop , 2000, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[33]  M. P. Kirpichnikov,et al.  Fibrillation of carrier protein albebetin and its biologically active constructs. Multiple oligomeric intermediates and pathways. , 2004, Biochemistry.

[34]  V. Uversky,et al.  Conformational behavior and aggregation of alpha-synuclein in organic solvents: modeling the effects of membranes. , 2003, Biochemistry.

[35]  R. Armstrong Glutathione S-transferases: reaction mechanism, structure, and function. , 1991, Chemical research in toxicology.

[36]  H. Koerner,et al.  Force Field for Mica-Type Silicates and Dynamics of Octadecylammonium Chains Grafted to Montmorillonite , 2005 .

[37]  E. Rojas,et al.  Alzheimer disease amyloid beta protein forms calcium channels in bilayer membranes: blockade by tromethamine and aluminum. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[38]  W. Norde,et al.  Why proteins prefer interfaces. , 1991, Journal of biomaterials science. Polymer edition.

[39]  Carsten Kutzner,et al.  GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation. , 2008, Journal of chemical theory and computation.

[40]  Blair F. Johnston,et al.  In silico modelling of drug–polymer interactions for pharmaceutical formulations , 2010, Journal of The Royal Society Interface.

[41]  C. Ionescu-Zanetti,et al.  Surface-catalyzed Amyloid Fibril Formation* , 2002, The Journal of Biological Chemistry.

[42]  J McLaurin,et al.  Cholesterol, a modulator of membrane-associated Abeta-fibrillogenesis and neurotoxicity. , 2001, Journal of molecular biology.

[43]  Mishal N. Patel,et al.  Anisotropic elastic network modeling of entire microtubules. , 2010, Biophysical journal.