Genic and Global Functions for Paf1C in Chromatin Modification and Gene Expression in Arabidopsis
暂无分享,去创建一个
[1] Toshiki Mori,et al. ALL-1 is a histone methyltransferase that assembles a supercomplex of proteins involved in transcriptional regulation. , 2002, Molecular cell.
[2] D. Reinberg,et al. Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27. , 2004, Genes & development.
[3] Vincenzo Pirrotta,et al. Polycomb silencing mechanisms and the management of genomic programmes , 2007, Nature Reviews Genetics.
[4] J. Carpten,et al. HRPT2, encoding parafibromin, is mutated in hyperparathyroidism–jaw tumor syndrome , 2002, Nature Genetics.
[5] K. Arndt,et al. Regulation of histone modification and cryptic transcription by the Bur1 and Paf1 complexes , 2007, The EMBO journal.
[6] A. Probst,et al. Chromatin techniques for plant cells. , 2004, The Plant journal : for cell and molecular biology.
[7] Kristian Helin,et al. Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions. , 2006, Genes & development.
[8] M. Robertson,et al. The Arabidopsis thaliana vernalization response requires a polycomb-like protein complex that also includes VERNALIZATION INSENSITIVE 3 , 2006, Proceedings of the National Academy of Sciences.
[9] R. Amasino,et al. PAF1-complex-mediated histone methylation of FLOWERING LOCUS C chromatin is required for the vernalization-responsive, winter-annual habit in Arabidopsis. , 2004, Genes & development.
[10] Eric S. Lander,et al. Genomic Maps and Comparative Analysis of Histone Modifications in Human and Mouse , 2005, Cell.
[11] S. Henikoff,et al. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. , 2002, Molecular cell.
[12] T. Jenuwein,et al. Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3 , 2004, The EMBO journal.
[13] Gordon K Smyth,et al. Statistical Applications in Genetics and Molecular Biology Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments , 2011 .
[14] Paul Tempst,et al. The human PAF complex coordinates transcription with events downstream of RNA synthesis. , 2005, Genes & development.
[15] A. Shilatifard,et al. Drosophila Rtf1 functions in histone methylation, gene expression, and Notch signaling , 2006, Proceedings of the National Academy of Sciences.
[16] Vincent Colot,et al. Arabidopsis TFL2/LHP1 Specifically Associates with Genes Marked by Trimethylation of Histone H3 Lysine 27 , 2007, PLoS genetics.
[17] Kevin Struhl,et al. Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. , 2003, Molecular cell.
[18] Hengbin Wang,et al. Role of Histone H3 Lysine 27 Methylation in Polycomb-Group Silencing , 2002, Science.
[19] David M. Mauger,et al. A Requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3' end formation. , 2005, Molecular cell.
[20] Stefan R. Henz,et al. A gene expression map of Arabidopsis thaliana development , 2005, Nature Genetics.
[21] R. Lister. SP14 Genome-Wide High-Resolution Mapping and Functional Analysis of DNA Methylation , 2007 .
[22] R. Amasino,et al. Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3 , 2004, Nature.
[23] J. Sikela,et al. The human homologue of the RNA polymerase II-associated factor 1 (hPaf1), localized on the 19q13 amplicon, is associated with tumorigenesis , 2006, Oncogene.
[24] I. Ladunga,et al. The Highly Similar Arabidopsis Homologs of Trithorax ATX1 and ATX2 Encode Proteins with Divergent Biochemical Functions[W] , 2008, The Plant Cell Online.
[25] J. Jaehning,et al. A posttranscriptional role for the yeast Paf1-RNA polymerase II complex is revealed by identification of primary targets. , 2005, Molecular cell.
[26] Megan F. Cole,et al. Genome-wide Map of Nucleosome Acetylation and Methylation in Yeast , 2005, Cell.
[27] Kevin Struhl,et al. The Rtf1 Component of the Paf1 Transcriptional Elongation Complex Is Required for Ubiquitination of Histone H2B* , 2003, Journal of Biological Chemistry.
[28] Tony Kouzarides,et al. Spatial Distribution of Di- and Tri-methyl Lysine 36 of Histone H3 at Active Genes* , 2005, Journal of Biological Chemistry.
[29] B M Turner,et al. Histone acetylation and an epigenetic code. , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.
[30] J. Yates,et al. The Set2 Histone Methyltransferase Functions through the Phosphorylated Carboxyl-terminal Domain of RNA Polymerase II* , 2003, The Journal of Biological Chemistry.
[31] D. Inzé,et al. ARABIDOPSIS TRITHORAX1 Dynamically Regulates FLOWERING LOCUS C Activation via Histone 3 Lysine 4 Trimethylation[W] , 2008, The Plant Cell Online.
[32] Thomas A. Milne,et al. A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling , 2006, Nature.
[33] Richard A Young,et al. Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo. , 2002, Molecular cell.
[34] U. Grossniklaus,et al. Different Polycomb group complexes regulate common target genes in Arabidopsis , 2006, EMBO reports.
[35] T. Mikkelsen,et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells , 2007, Nature.
[36] Shane C. Dillon,et al. The landscape of histone modifications across 1% of the human genome in five human cell lines. , 2007, Genome research.
[37] M. Johnston,et al. The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation. , 2003, Molecular cell.
[38] R. Martienssen,et al. Vernalization requires epigenetic silencing of FLC by histone methylation , 2004, Nature.
[39] Kevin Struhl,et al. Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation. , 2005, Molecular cell.
[40] Stuart L Schreiber,et al. Methylation of histone H3 K4 mediates association of the Isw1p ATPase with chromatin. , 2003, Molecular cell.
[41] J. Jaehning,et al. The Paf1 complex has functions independent of actively transcribing RNA polymerase II. , 2004, Molecular cell.
[42] C. Allis,et al. The language of covalent histone modifications , 2000, Nature.
[43] J. Martens,et al. Partitioning and plasticity of repressive histone methylation states in mammalian chromatin. , 2003, Molecular cell.
[44] Nathaniel D. Heintzman,et al. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome , 2007, Nature Genetics.
[45] R. Amasino,et al. Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1 , 2006, Nature Genetics.
[46] S. van Nocker,et al. The VERNALIZATION INDEPENDENCE 4 gene encodes a novel regulator of FLOWERING LOCUS C. , 2002, The Plant journal : for cell and molecular biology.
[47] W. Shen,et al. Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36 , 2005, Nature Cell Biology.
[48] D. Stillman,et al. Opposing roles for Set2 and yFACT in regulating TBP binding at promoters , 2006, The EMBO journal.
[49] Paul Tempst,et al. Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. , 2007, Molecular cell.
[50] W. Peacock,et al. Epigenetic regulation of flowering. , 2007, Current opinion in plant biology.
[51] Songgang Li,et al. High-Resolution Mapping of Epigenetic Modifications of the Rice Genome Uncovers Interplay between DNA Methylation, Histone Methylation, and Gene Expression[W] , 2008, The Plant Cell Online.
[52] Richard Bourgon,et al. Genome-wide analysis of Polycomb targets in Drosophila melanogaster , 2006, Nature Genetics.
[53] S. Tillib,et al. Modulation of heat shock gene expression by the TAC1 chromatin-modifying complex , 2004, Nature Cell Biology.
[54] B. Steensel,et al. Genome-wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster , 2006, Nature Genetics.
[55] C. Chang,et al. Cdc73p and Paf1p are found in a novel RNA polymerase II-containing complex distinct from the Srbp-containing holoenzyme , 1997, Molecular and cellular biology.
[56] Philip R. Gafken,et al. Histone H3.3 is enriched in covalent modifications associated with active chromatin. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[57] Danny Reinberg,et al. Elongation by RNA polymerase II: the short and long of it. , 2004, Genes & development.
[58] Steven P. Gygi,et al. Association of the Histone Methyltransferase Set2 with RNA Polymerase II Plays a Role in Transcription Elongation* , 2002, The Journal of Biological Chemistry.
[59] K. Basler,et al. Parafibromin/Hyrax Activates Wnt/Wg Target Gene Transcription by Direct Association with β-catenin/Armadillo , 2006, Cell.
[60] M. Gstaiger,et al. The HRPT2 Tumor Suppressor Gene Product Parafibromin Associates with Human PAF1 and RNA Polymerase II , 2005, Molecular and Cellular Biology.
[61] Wing Hung Wong,et al. TileMap: create chromosomal map of tiling array hybridizations , 2005, Bioinform..
[62] Thomas A. Milne,et al. WDR5 Associates with Histone H3 Methylated at K4 and Is Essential for H3 K4 Methylation and Vertebrate Development , 2005, Cell.
[63] James A. Cuff,et al. A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells , 2006, Cell.
[64] Mark Johnston,et al. The Paf1 Complex Is Essential for Histone Monoubiquitination by the Rad6-Bre1 Complex, Which Signals for Histone Methylation by COMPASS and Dot1p* , 2003, Journal of Biological Chemistry.
[65] Charles Kooperberg,et al. The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote. , 2004, Genes & development.
[66] P. Grant,et al. Set2 Is a Nucleosomal Histone H3-Selective Methyltransferase That Mediates Transcriptional Repression , 2002, Molecular and Cellular Biology.
[67] Nevan J. Krogan,et al. Cotranscriptional Set2 Methylation of Histone H3 Lysine 36 Recruits a Repressive Rpd3 Complex , 2005, Cell.
[68] M. Pellegrini,et al. Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis , 2006, Cell.
[69] S. van Nocker,et al. A Mechanism Related to the Yeast Transcriptional Regulator Paf1c Is Required for Expression of the Arabidopsis FLC/MAF MADS Box Gene Familyw⃞ , 2004, The Plant Cell Online.
[70] R. Amasino,et al. Establishment of the Vernalization-Responsive, Winter-Annual Habit in Arabidopsis Requires a Putative Histone H3 Methyl Transferase[W] , 2005, The Plant Cell Online.
[71] Lianna Johnson,et al. Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. , 2004, Nucleic acids research.
[72] Stuart L. Schreiber,et al. Active genes are tri-methylated at K4 of histone H3 , 2002, Nature.
[73] Christopher R. Vakoc,et al. Profile of Histone Lysine Methylation across Transcribed Mammalian Chromatin , 2006, Molecular and Cellular Biology.
[74] J. Jaehning,et al. The Yeast Paf1-RNA Polymerase II Complex Is Required for Full Expression of a Subset of Cell Cycle-Regulated Genes , 2002, Eukaryotic Cell.
[75] A. Steinmetz,et al. Arabidopsis thaliana , 2022, CABI Compendium.
[76] T. Jenuwein,et al. Silencing by plant Polycomb‐group genes requires dispersed trimethylation of histone H3 at lysine 27 , 2006, The EMBO journal.
[77] O. Rozenblatt-Rosen,et al. The Parafibromin Tumor Suppressor Protein Is Part of a Human Paf1 Complex , 2005, Molecular and Cellular Biology.
[78] D. Reinberg,et al. Drosophila Paf1 Modulates Chromatin Structure at Actively Transcribed Genes , 2006, Molecular and Cellular Biology.
[79] R. Sternglanz,et al. The Bur1 Cyclin-Dependent Protein Kinase Is Required for the Normal Pattern of Histone Methylation bySet2 , 2006, Molecular and Cellular Biology.
[80] S. van Nocker,et al. Genetic analysis of early flowering mutants in Arabidopsis defines a class of pleiotropic developmental regulator required for expression of the flowering-time switch flowering locus C. , 2003, Genetics.
[81] Rein Aasland,et al. The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4 , 2001, The EMBO journal.
[82] Bing Li,et al. Histone H3 Methylation by Set2 Directs Deacetylation of Coding Regions by Rpd3S to Suppress Spurious Intragenic Transcription , 2005, Cell.
[83] G. Cagney,et al. Methylation of Histone H3 by Set2 in Saccharomyces cerevisiae Is Linked to Transcriptional Elongation by RNA Polymerase II , 2003, Molecular and Cellular Biology.
[84] S. Squazzo,et al. The Paf1 complex physically and functionally associates with transcription elongation factors in vivo , 2002, The EMBO journal.
[85] Matteo Pellegrini,et al. Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis , 2007, PLoS biology.