Introduction to epigenomics and epigenome-wide analysis.
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[1] M. Ratner. Human Genome Sciences trial data wow lupus community , 2009, Nature Biotechnology.
[2] A. Feinberg,et al. Genome-wide methylation analysis of human colon cancer reveals similar hypo- and hypermethylation at conserved tissue-specific CpG island shores , 2008, Nature Genetics.
[3] David J Hand,et al. Breast Cancer Diagnosis from Proteomic Mass Spectrometry Data: A Comparative Evaluation , 2008, Statistical applications in genetics and molecular biology.
[4] Shuji Ogino,et al. A cohort study of tumoral LINE-1 hypomethylation and prognosis in colon cancer. , 2008, Journal of the National Cancer Institute.
[5] Thomas Mikeska,et al. Rapid analysis of heterogeneously methylated DNA using digital methylation-sensitive high resolution melting: application to the CDKN2B (p15) gene , 2008, Epigenetics & Chromatin.
[6] A. Urban,et al. MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment. , 2008, Genome research.
[7] O. Rando,et al. Reduced-representation methylation mapping , 2008, Genome Biology.
[8] Z. Herceg,et al. Epigenetic interplay between histone modifications and DNA methylation in gene silencing. , 2008, Mutation research.
[9] R. Durbin,et al. A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis , 2008, Nature Biotechnology.
[10] Jon Wakefield,et al. Reporting and interpretation in genome-wide association studies. , 2008, International journal of epidemiology.
[11] Rafael A Irizarry,et al. Comprehensive high-throughput arrays for relative methylation (CHARM). , 2008, Genome research.
[12] Quan Chen,et al. An analytical pipeline for genomic representations used for cytosine methylation studies , 2008, Bioinform..
[13] Stephan Beck,et al. The methylome: approaches for global DNA methylation profiling. , 2008, Trends in genetics : TIG.
[14] Peter Gibbs,et al. Cytosine methylation profiling of cancer cell lines , 2008, Proceedings of the National Academy of Sciences.
[15] Steven Piantadosi,et al. DNA methylation markers and early recurrence in stage I lung cancer. , 2008, The New England journal of medicine.
[16] Jonathan Pevsner,et al. DNA methylation signatures within the human brain. , 2007, American journal of human genetics.
[17] Steven Henikoff,et al. Genome-wide analysis of DNA methylation patterns , 2007, Development.
[18] R. Jaenisch,et al. DNA Methylation in the Human Cerebral Cortex Is Dynamically Regulated throughout the Life Span and Involves Differentiated Neurons , 2007, PloS one.
[19] Dong Xu,et al. Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing. , 2007, Cancer research.
[20] J. Rogers,et al. DNA methylation profiling of human chromosomes 6, 20 and 22 , 2006, Nature Genetics.
[21] Kenny Q. Ye,et al. Comparative isoschizomer profiling of cytosine methylation: the HELP assay. , 2006, Genome research.
[22] Wei Jiang,et al. High-throughput DNA methylation profiling using universal bead arrays. , 2006, Genome research.
[23] B. Weinhold. Epigenetics: The Science of Change , 2006, Virchows Archiv.
[24] A. Bird,et al. Genomic DNA methylation: the mark and its mediators. , 2006, Trends in biochemical sciences.
[25] T. Gingeras,et al. Microarray-based DNA methylation profiling: technology and applications , 2022 .
[26] A. Feinberg,et al. The epigenetic progenitor origin of human cancer , 2006, Nature Reviews Genetics.
[27] Peter L Molloy,et al. DNA methylation: Bisulphite modification and analysis , 2006, Nature Protocols.
[28] R. Martienssen,et al. RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe. , 2005, Trends in genetics : TIG.
[29] Annette M. Molinaro,et al. Prediction error estimation: a comparison of resampling methods , 2005, Bioinform..
[30] W. Lam,et al. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells , 2005, Nature Genetics.
[31] J. Issa. CpG island methylator phenotype in cancer , 2004, Nature Reviews Cancer.
[32] I. Gut,et al. De novo quantitative bisulfite sequencing using the pyrosequencing technology. , 2004, Analytical biochemistry.
[33] Edith Heard,et al. Recent advances in X-chromosome inactivation. , 2004, Current opinion in cell biology.
[34] John M. Greally,et al. Epigenomics: beyond CpG islands , 2004, Nature Reviews Genetics.
[35] Nathaniel Rothman,et al. Assessing the Probability That a Positive Report is False: An Approach for Molecular Epidemiology Studies , 2004 .
[36] J. Herman,et al. Gene silencing in cancer in association with promoter hypermethylation. , 2003, The New England journal of medicine.
[37] John D. Storey,et al. Statistical significance for genomewide studies , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[38] B. Richardson. Impact of aging on DNA methylation , 2003, Ageing Research Reviews.
[39] Hoguen Kim,et al. Concerted promoter hypermethylation of hMLH1, p16INK4A, and E‐cadherin in gastric carcinomas with microsatellite instability , 2003, The Journal of pathology.
[40] Rachel Jones,et al. Behavioural genetics: Worms gang up on bacteria , 2002, Nature Reviews Genetics.
[41] B. Iacopetta,et al. Characterisation of colorectal cancers showing hypermethylation at multiple CpG islands , 2002, Gut.
[42] C. Carpenter,et al. DNA methylation analysis: a powerful new tool for lung cancer diagnosis , 2002, Oncogene.
[43] B. Richardson,et al. Role of DNA methylation in the regulation of cell function: autoimmunity, aging and cancer. , 2002, The Journal of nutrition.
[44] Terry L. Smith,et al. DNA methylation of multiple promoter-associated CpG islands in adult acute lymphocytic leukemia. , 2002, Clinical cancer research : an official journal of the American Association for Cancer Research.
[45] T. Efferth,et al. Use of CpG island microarrays to identify colorectal tumors with a high degree of concurrent methylation. , 2002, Methods.
[46] P. Laird,et al. Analysis of complex methylation data. , 2002, Methods.
[47] Peter A. Jones,et al. The fundamental role of epigenetic events in cancer , 2002, Nature Reviews Genetics.
[48] S. Dudoit,et al. Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data , 2002 .
[49] A. Bird,et al. MeCP2 and other methyl-CpG binding proteins. , 2002, Mental retardation and developmental disabilities research reviews.
[50] Robert Brown,et al. Primary ovarian carcinomas display multiple methylator phenotypes involving known tumor suppressor genes. , 2001, The American journal of pathology.
[51] Trevor Hastie,et al. The Elements of Statistical Learning , 2001 .
[52] G. Felsenfeld,et al. Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene , 2000, Nature.
[53] P. Laird,et al. MethyLight: a high-throughput assay to measure DNA methylation. , 2000, Nucleic acids research.
[54] R H Hruban,et al. Hypermethylation of multiple genes in pancreatic adenocarcinoma. , 2000, Cancer research.
[55] N. Ahuja,et al. Distinct genetic profiles in colorectal tumors with or without the CpG island methylator phenotype. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[56] S. Baylin,et al. Aberrant methylation in gastric cancer associated with the CpG island methylator phenotype. , 1999, Cancer research.
[57] M. Toyota,et al. CpG island methylator phenotypes in aging and cancer. , 1999, Seminars in cancer biology.
[58] J. Herman,et al. Hypermethylation of tumor suppressor genes in cancer. , 1999, Seminars in cancer biology.
[59] J. Herman,et al. CpG island methylator phenotype in colorectal cancer. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[60] S. Baylin,et al. Concordant methylation of the ER and N33 genes in glioblastoma multiforme , 1998, Oncogene.
[61] P. Laird. Oncogenic mechanisms mediated by DNA methylation. , 1997, Molecular medicine today.
[62] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[63] S. Clark,et al. High sensitivity mapping of methylated cytosines. , 1994, Nucleic acids research.
[64] R. Tibshirani,et al. An Introduction to the Bootstrap , 1995 .
[65] E. Raleigh,et al. McrBC: a multisubunit GTP-dependent restriction endonuclease. , 1992, Journal of molecular biology.
[66] L. E. McDonald,et al. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[67] A. Atkinson. Subset Selection in Regression , 1992 .
[68] A. Feinberg,et al. Reduced genomic 5-methylcytosine content in human colonic neoplasia. , 1988, Cancer research.
[69] M. Frommer,et al. CpG islands in vertebrate genomes. , 1987, Journal of molecular biology.
[70] A. Bird. CpG-rich islands and the function of DNA methylation , 1986, Nature.
[71] M. Ehrlich,et al. The 5-methylcytosine content of DNA from human tumors. , 1983, Nucleic acids research.
[72] A. Bird. DNA methylation and the frequency of CpG in animal DNA. , 1980, Nucleic acids research.
[73] S. Holm. A Simple Sequentially Rejective Multiple Test Procedure , 1979 .