Genome-wide identification of polycomb-associated RNAs by RIP-seq.

[1]  S. Raguz,et al.  Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a. , 2010, Molecular cell.

[2]  Richard G. Jenner,et al.  Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2. , 2010, Molecular cell.

[3]  Jeannie T. Lee,et al.  The X as model for RNA's niche in epigenomic regulation. , 2010, Cold Spring Harbor perspectives in biology.

[4]  Juri Rappsilber,et al.  JARID2 regulates binding of the Polycomb repressive complex 2 to target genes in ES cells , 2010, Nature.

[5]  Howard Y. Chang,et al.  Long noncoding RNA HOTAIR reprograms chromatin state to promote cancer metastasis , 2010, Nature.

[6]  Gang Li,et al.  Jarid2 and PRC2, partners in regulating gene expression. , 2010, Genes & development.

[7]  P. Park,et al.  A Region of the Human HOXD Cluster that Confers Polycomb-Group Responsiveness , 2010, Cell.

[8]  S. Orkin,et al.  Jumonji Modulates Polycomb Activity and Self-Renewal versus Differentiation of Stem Cells , 2009, Cell.

[9]  Arend Sidow,et al.  Jarid2/Jumonji Coordinates Control of PRC2 Enzymatic Activity and Target Gene Occupancy in Pluripotent Cells , 2009, Cell.

[10]  H. Lipshitz,et al.  A Vertebrate Polycomb Response Element Governs Segmentation of the Posterior Hindbrain , 2009, Cell.

[11]  Jeannie T. Lee Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome. , 2009, Genes & development.

[12]  J. Rinn,et al.  Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression , 2009, Proceedings of the National Academy of Sciences.

[13]  Y. Sotomaru,et al.  Deletion of Gtl2, imprinted non-coding RNA, with its differentially methylated region induces lethal parent-origin-dependent defects in mice. , 2009, Human molecular genetics.

[14]  J. Kawai,et al.  Tiny RNAs associated with transcription start sites in animals , 2009, Nature Genetics.

[15]  J. Mattick,et al.  Long non-coding RNAs: insights into functions , 2009, Nature Reviews Genetics.

[16]  Michael F. Lin,et al.  Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals , 2009, Nature.

[17]  Gene W. Yeo,et al.  Divergent Transcription from Active Promoters , 2008, Science.

[18]  Leighton J. Core,et al.  Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters , 2008, Science.

[19]  J. Simon,et al.  Roles of the EZH2 histone methyltransferase in cancer epigenetics. , 2008, Mutation research.

[20]  Guo-Cheng Yuan,et al.  EZH1 mediates methylation on histone H3 lysine 27 and complements EZH2 in maintaining stem cell identity and executing pluripotency. , 2008, Molecular cell.

[21]  Jennifer A. Erwin,et al.  Polycomb Proteins Targeted by a Short Repeat RNA to the Mouse X Chromosome , 2008, Science.

[22]  J. Komorowski,et al.  Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. , 2008, Molecular cell.

[23]  Simon Kasif,et al.  Genomewide Analysis of PRC1 and PRC2 Occupancy Identifies Two Classes of Bivalent Domains , 2008, PLoS genetics.

[24]  B. Williams,et al.  Mapping and quantifying mammalian transcriptomes by RNA-Seq , 2008, Nature Methods.

[25]  L. Matthews,et al.  The Evolution of the DLK1-DIO3 Imprinted Domain in Mammals , 2008, PLoS biology.

[26]  Y. Schwartz,et al.  Polycomb complexes and epigenetic states. , 2008, Current opinion in cell biology.

[27]  S. Ranade,et al.  Stem cell transcriptome profiling via massive-scale mRNA sequencing , 2008, Nature Methods.

[28]  M. van Lohuizen,et al.  Stem cell regulation by polycomb repressors: postponing commitment. , 2008, Current opinion in cell biology.

[29]  Rosa Bernardi,et al.  Structure, dynamics and functions of promyelocytic leukaemia nuclear bodies , 2007, Nature Reviews Molecular Cell Biology.

[30]  M. Begemann,et al.  Concise Review: Roles of Polycomb Group Proteins in Development and Disease: A Stem Cell Perspective , 2007, Stem cells.

[31]  M. Bartolomei,et al.  SnapShot: Imprinted Gene Clusters , 2007, Cell.

[32]  T. Mikkelsen,et al.  Genome-wide maps of chromatin state in pluripotent and lineage-committed cells , 2007, Nature.

[33]  Howard Y. Chang,et al.  Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs , 2007, Cell.

[34]  P. Stadler,et al.  RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription , 2007, Science.

[35]  A. Ferguson-Smith,et al.  Mechanisms regulating imprinted genes in clusters. , 2007, Current opinion in cell biology.

[36]  C. Caldas,et al.  Cancer genetics of epigenetic genes. , 2007, Human molecular genetics.

[37]  Daniel Chourrout,et al.  Genome Regulation by Polycomb and Trithorax Proteins , 2007, Cell.

[38]  Anke Sparmann,et al.  Polycomb silencers control cell fate, development and cancer , 2006, Nature Reviews Cancer.

[39]  T. Jenuwein,et al.  Recruitment of PRC1 function at the initiation of X inactivation independent of PRC2 and silencing , 2006, The EMBO journal.

[40]  J. Zeitlinger,et al.  Polycomb complexes repress developmental regulators in murine embryonic stem cells , 2006, Nature.

[41]  Megan F. Cole,et al.  Control of Developmental Regulators by Polycomb in Human Embryonic Stem Cells , 2006, Cell.

[42]  James A. Cuff,et al.  A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells , 2006, Cell.

[43]  C. Allis,et al.  Mouse Polycomb Proteins Bind Differentially to Methylated Histone H3 and RNA and Are Enriched in Facultative Heterochromatin , 2006, Molecular and Cellular Biology.

[44]  Richard Bourgon,et al.  Genome-wide analysis of Polycomb targets in Drosophila melanogaster , 2006, Nature Genetics.

[45]  Jernej Ule,et al.  CLIP: a method for identifying protein-RNA interaction sites in living cells. , 2005, Methods.

[46]  S. Salzberg,et al.  The Transcriptional Landscape of the Mammalian Genome , 2005, Science.

[47]  C. Allis,et al.  RNA meets chromatin. , 2005, Genes & development.

[48]  Stormy J. Chamberlain,et al.  The Murine Polycomb Group Protein Eed Is Required for Global Histone H3 Lysine-27 Methylation , 2005, Current Biology.

[49]  David A McCormick,et al.  Neuronal Networks: Flip-Flops in theBrain , 2005, Current Biology.

[50]  Renato Paro,et al.  Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins. , 2004, Annual review of genetics.

[51]  Kristian Helin,et al.  Suz12 is essential for mouse development and for EZH2 histone methyltransferase activity , 2004, The EMBO journal.

[52]  H. Axelson The Notch signaling cascade in neuroblastoma: role of the basic helix-loop-helix proteins HASH-1 and HES-1. , 2004, Cancer letters.

[53]  G. Kelsey,et al.  Epigenetic Properties and Identification of an Imprint Mark in the Nesp-Gnasxl Domain of the Mouse Gnas Imprinted Locus , 2003, Molecular and Cellular Biology.

[54]  R. Kingston,et al.  Reconstitution of a functional core polycomb repressive complex. , 2001, Molecular cell.

[55]  Jeannie T. Lee,et al.  Targeted Mutagenesis of Tsix Leads to Nonrandom X Inactivation , 1999, Cell.

[56]  K. Bomsztyk,et al.  Point Mutations in the WD40 Domain of Eed Block Its Interaction with Ezh2 , 1998, Molecular and Cellular Biology.

[57]  M. Bartolomei,et al.  Regulation of imprinting in clusters: noncoding RNAs versus insulators. , 2008, Advances in genetics.

[58]  P. Glenister,et al.  Identification of an imprinting control region affecting the expression of all transcripts in the Gnas cluster , 2006, Nature Genetics.

[59]  B. Berger,et al.  ARACHNE: a whole-genome shotgun assembler. , 2002, Genome research.