Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis

[1]  Christian P. Kubicek,et al.  Production of Organic Acids by Fungi , 2021, Encyclopedia of Mycology.

[2]  J. Latgé,et al.  Microbe Profile: Aspergillus fumigatus: a saprotrophic and opportunistic fungal pathogen , 2018, Microbiology.

[3]  B. Šantek,et al.  Lignocellulose degradation: An overview of fungi and fungal enzymes involved in lignocellulose degradation , 2018, Engineering in life sciences.

[4]  Zhenglu Yang,et al.  dbCAN2: a meta server for automated carbohydrate-active enzyme annotation , 2018, Nucleic Acids Res..

[5]  B. Henrissat,et al.  Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi , 2018, Scientific Reports.

[6]  K. Barry,et al.  Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum , 2018, Front. Microbiol..

[7]  B. Thomma,et al.  Tools of the crook‐ infection strategies of fungal plant pathogens , 2018, The Plant journal : for cell and molecular biology.

[8]  M. Hofrichter,et al.  Draft Genome Sequence of the Sordariomycete Lecythophora (Coniochaeta) hoffmannii CBS 245.38 , 2018, Genome Announcements.

[9]  M. Briand,et al.  Genome Sequence of the Necrotrophic Plant Pathogen Alternaria brassicicola Abra43 , 2018, Genome Announcements.

[10]  B. Henrissat,et al.  Lytic xylan oxidases from wood-decay fungi unlock biomass degradation. , 2018, Nature chemical biology.

[11]  A. Salamov,et al.  Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species , 2018, Proceedings of the National Academy of Sciences.

[12]  Y. Ishitsuka,et al.  Superresolution and pulse-chase imaging reveal the role of vesicle transport in polar growth of fungal cells , 2018, Science Advances.

[13]  W. Qin,et al.  Comparative study of genome-wide plant biomass-degrading CAZymes in white rot, brown rot and soft rot fungi , 2017, Mycology.

[14]  L. A. Santos,et al.  Contribution of dark septate fungi to the nutrient uptake and growth of rice plants , 2017, Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology].

[15]  Geeta,et al.  Fungal and Bacterial Biotrophy and Necrotrophy , 2018 .

[16]  M. Tejesvi,et al.  Endophytic Fungi, Occurrence, and Metabolites , 2018 .

[17]  G. Steinberg,et al.  The Role of the Fungal Cell Wall in the Infection of Plants. , 2017, Trends in microbiology.

[18]  Peter N. Ciesielski,et al.  Lignocellulose deconstruction in the biosphere. , 2017, Current opinion in chemical biology.

[19]  Yijie Dong,et al.  The Magnaporthe oryzae Alt A 1-like protein MoHrip1 binds to the plant plasma membrane. , 2017, Biochemical and biophysical research communications.

[20]  E. Stukenbrock,et al.  Evolution and genome architecture in fungal plant pathogens , 2017, Nature Reviews Microbiology.

[21]  Jennifer H. Wisecaver,et al.  Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species , 2017, bioRxiv.

[22]  J. Latgé,et al.  The Fungal Cell Wall: Structure, Biosynthesis, and Function , 2017, Microbiology spectrum.

[23]  Jing Luo,et al.  Root endophytic fungal communities associated with pitch pine, switchgrass, and rosette grass in the pine barrens ecosystem. , 2017, Fungal biology.

[24]  Kai Blin,et al.  antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification , 2017, Nucleic Acids Res..

[25]  J. Jaromczyk,et al.  Swainsonine Biosynthesis Genes in Diverse Symbiotic and Pathogenic Fungi , 2017, G3: Genes, Genomes, Genetics.

[26]  M. Banfield,et al.  Effectors of Filamentous Plant Pathogens: Commonalities amid Diversity , 2017, Microbiology and Molecular Biology Reviews.

[27]  C. Donati,et al.  Legal immigrants: invasion of alien microbial communities during winter occurring desert dust storms , 2017, Microbiome.

[28]  S. R. Pombeiro-Sponchiado,et al.  Production of Melanin Pigment by Fungi and Its Biotechnological Applications , 2017 .

[29]  A. Casadevall,et al.  Functions of fungal melanin beyond virulence. , 2017, Fungal biology reviews.

[30]  G. Sherlock,et al.  Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus , 2017, Genome Biology.

[31]  C. Kuske,et al.  6. Fungal Diversity, Community Structure and Their Functional Roles in Desert Soils , 2017 .

[32]  A. García,et al.  Dark septate endophyte decreases stress on rice plants , 2016, Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology].

[33]  Minoru Kanehisa,et al.  KEGG: new perspectives on genomes, pathways, diseases and drugs , 2016, Nucleic Acids Res..

[34]  N. N. Gessler,et al.  Melanin Pigments of fungi , 2017 .

[35]  A. Moretti,et al.  Mycotoxigenic Fungi , 2017, Methods in Molecular Biology.

[36]  E. Nelson.  The seed microbiome: Origins, interactions, and impacts , 2017, Plant and Soil.

[37]  G. Kovács,et al.  Interspecific metabolic diversity of root-colonizing endophytic fungi revealed by enzyme activity tests. , 2016, FEMS microbiology ecology.

[38]  B. Lugtenberg,et al.  Fungal endophytes for sustainable crop production. , 2016, FEMS microbiology ecology.

[39]  K. Kang,et al.  Secreted Alpha-N-Arabinofuranosidase B Protein Is Required for the Full Virulence of Magnaporthe oryzae and Triggers Host Defences , 2016, PloS one.

[40]  Baoyu Zhao,et al.  The toxicology mechanism of endophytic fungus and swainsonine in locoweed. , 2016, Environmental toxicology and pharmacology.

[41]  P. Pristaš,et al.  Comparison of two Coniochaeta species (C. ligniaria and C. malacotricha) with a new pathogen of black pine needles – Sordaria macrospora , 2016 .

[42]  H. Yin,et al.  Crystal structure of glycogen debranching enzyme and insights into its catalysis and disease-causing mutations , 2016, Nature Communications.

[43]  W. Ogasawara,et al.  Deciphering the molecular mechanisms behind cellulase production in Trichoderma reesei, the hyper-cellulolytic filamentous fungus , 2016, Bioscience, biotechnology, and biochemistry.

[44]  J. Xu,et al.  PsAAT3, an oomycete-specific aspartate aminotransferase, is required for full pathogenicity of the oomycete pathogen Phytophthora sojae. , 2016, Fungal biology.

[45]  L. Villa-Tanaca,et al.  Secreted fungal aspartic proteases: A review. , 2016, Revista iberoamericana de micologia.

[46]  P. Bajpai.  Pretreatment of Lignocellulosic Biomass for Biofuel Production , 2016 .

[47]  Tao Li,et al.  Unraveling the role of dark septate endophyte (DSE) colonizing maize (Zea mays) under cadmium stress: physiological, cytological and genic aspects , 2016, Scientific Reports.

[48]  Jaeyoung Choi,et al.  Kingdom-Wide Analysis of Fungal Small Secreted Proteins (SSPs) Reveals their Potential Role in Host Association , 2016, Front. Plant Sci..

[49]  J. Schumacher.  DHN melanin biosynthesis in the plant pathogenic fungus Botrytis cinerea is based on two developmentally regulated key enzyme (PKS)‐encoding genes , 2016, Molecular microbiology.

[50]  R. Koide,et al.  The decomposition of ectomycorrhizal fungal necromass , 2016 .

[51]  Deepak Bokati,et al.  Soil Influences Colonization of Root-Associated Fungal Endophyte Communities of Maize, Wheat, and Their Progenitors , 2016 .

[52]  J. Frisvad,et al.  Extrolites of Aspergillus fumigatus and Other Pathogenic Species in Aspergillus Section Fumigati , 2016, Front. Microbiol..

[53]  Robert D. Finn,et al.  The Pfam protein families database: towards a more sustainable future , 2015, Nucleic Acids Res..

[54]  Neetika Nath,et al.  CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes , 2015, Bioinform..

[55]  Vera Göhre,et al.  Fungal chitinases: function, regulation, and potential roles in plant/pathogen interactions , 2015, Current Genetics.

[56]  G. Davies,et al.  Lytic Polysaccharide Monooxygenases in Biomass Conversion. , 2015, Trends in biotechnology.

[57]  F. Martin,et al.  Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins , 2015, Front. Microbiol..

[58]  R. Harrison,et al.  Discrete lineages within Alternaria alternata species group: Identification using new highly variable loci and support from morphological characters. , 2015, Fungal biology.

[59]  D. Jiménez,et al.  Soil-Derived Microbial Consortia Enriched with Different Plant Biomass Reveal Distinct Players Acting in Lignocellulose Degradation , 2015, Microbial Ecology.

[60]  A. Fiorentino,et al.  Plant Bioactive Metabolites and Drugs Produced by Endophytic Fungi of Spermatophyta , 2015 .

[61]  S. Kelly,et al.  Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence , 2015, Fungal genetics and biology : FG & B.

[62]  P. Crous,et al.  Resolving the Phoma enigma , 2015, Studies in mycology.

[63]  S. Reissmann,et al.  Fungal effectors and plant susceptibility. , 2015, Annual review of plant biology.

[64]  G. King,et al.  Correction: Relative Abundance of and Composition within Fungal Orders Differ between Cheatgrass (Bromus tectorum) and Sagebrush (Artemisia tridentata)-Associated Soils , 2015, PloS one.

[65]  B. Thomma,et al.  The battle for chitin recognition in plant-microbe interactions. , 2015, FEMS microbiology reviews.

[66]  G. King,et al.  Relative Abundance of and Composition within Fungal Orders Differ between Cheatgrass (Bromus tectorum) and Sagebrush (Artemisia tridentata)-Associated Soils , 2015, PloS one.

[67]  I. Baccelli.  Cerato-platanin family proteins: one function for multiple biological roles? , 2014, Front. Plant Sci..

[68]  R. Sinsabaugh,et al.  The Soil Fungi , 2015 .

[69]  R. Sinsabaugh,et al.  The Soil Fungi , 2015 .

[70]  Pavel A. Pevzner,et al.  Universal database search tool for proteomics , 2014, Nature Communications.

[71]  J. Cornelis,et al.  Impact of rice cultivar and organ on elemental composition of phytoliths and the release of bio-available silicon , 2014, Front. Plant Sci..

[72]  N. L. Glass,et al.  Plant cell wall-degrading enzymes and their secretion in plant-pathogenic fungi. , 2014, Annual review of phytopathology.

[73]  J. A. Oguiza,et al.  Comparative analysis of secretomes in basidiomycete fungi. , 2014, Journal of proteomics.

[74]  F. Solano.  Melanins: Skin Pigments and Much More—Types, Structural Models, Biological Functions, and Formation Routes , 2014 .

[75]  R. Balestrini,et al.  Cell wall remodeling in mycorrhizal symbiosis: a way towards biotrophism , 2014, Front. Plant Sci..

[76]  A. S. Egorova,et al.  Melanin pigments of fungi under extreme environmental conditions (Review) , 2014, Applied Biochemistry and Microbiology.

[77]  R. D. de Vries,et al.  Oxalate-Metabolising Genes of the White-Rot Fungus Dichomitus squalens Are Differentially Induced on Wood and at High Proton Concentration , 2014, PloS one.

[78]  A. Vasavada,et al.  DOPA and DHN pathway orchestrate melanin synthesis in Aspergillus species. , 2013, Medical mycology.

[79]  Hongzhang Chen.  Chemical Composition and Structure of Natural Lignocellulose , 2014 .

[80]  Md. Saghir Khan,et al.  Mechanism of Phosphate Solubilization and Physiological Functions of Phosphate-Solubilizing Microorganisms , 2014 .

[81]  R. Sharp.  A Review of the Applications of Chitin and Its Derivatives in Agriculture to Modify Plant-Microbial Interactions and Improve Crop Yields , 2013 .

[82]  Jaeyoung Choi,et al.  Fungal plant cell wall-degrading enzyme database: a platform for comparative and evolutionary genomics in fungi and Oomycetes , 2013, BMC Genomics.

[83]  Aaron R. Phillips,et al.  SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes , 2013, Bioinform..

[84]  Jamie H. D. Cate,et al.  Plant cell wall deconstruction by ascomycete fungi. , 2013, Annual review of microbiology.

[85]  B. Ahring,et al.  Fungal Beta-Glucosidases: A Bottleneck in Industrial Use of Lignocellulosic Materials , 2013, Biomolecules.

[86]  J. Rose,et al.  The Formation and Function of Plant Cuticles1 , 2013, Plant Physiology.

[87]  Sarah M. Emery,et al.  Fungal symbionts alter plant responses to global change. , 2013, American journal of botany.

[88]  P. Crous,et al.  Alternaria redefined , 2013, Studies in mycology.

[89]  Ligang Zhou,et al.  Metabolites from Alternaria Fungi and Their Bioactivities , 2013, Molecules.

[90]  S. Eddy,et al.  Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions , 2013, Nucleic acids research.

[91]  S. Assié,et al.  Disruption of Bcchs4, Bcchs6 or Bcchs7 chitin synthase genes in Botrytis cinerea and the essential role of class VI chitin synthase (Bcchs6). , 2013, Fungal genetics and biology : FG & B.

[92]  K. Kouno,et al.  Phytate Degradation by Fungi and Bacteria that Inhabit Sawdust and Coffee Residue Composts , 2012, Microbes and environments.

[93]  K. Ohtani,et al.  Host-selective toxins produced by the plant pathogenic fungus Alternaria alternata. , 2013, FEMS microbiology reviews.

[94]  S. Luti,et al.  Cerato-platanin shows expansin-like activity on cellulosic materials , 2013, Applied Microbiology and Biotechnology.

[95]  K. Hammond-Kosack,et al.  Defining the Predicted Protein Secretome of the Fungal Wheat Leaf Pathogen Mycosphaerella graminicola , 2012, PloS one.

[96]  S. Sze,et al.  Characterization of extracellular lignocellulolytic enzymes of Coniochaeta sp. during corn stover bioconversion , 2012 .

[97]  A. Salamov,et al.  Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi , 2012, PLoS pathogens.

[98]  Jiujiang Yu,et al.  Current Understanding on Aflatoxin Biosynthesis and Future Perspective in Reducing Aflatoxin Contamination , 2012, Toxins.

[99]  P. Christakopoulos,et al.  Cellulose degradation by oxidative enzymes , 2012, Computational and structural biotechnology journal.

[100]  K. Sterflinger,et al.  Fungi in hot and cold deserts with particular reference to microcolonial fungi , 2012 .

[101]  B. Henrissat,et al.  Degradation of different pectins by fungi: correlations and contrasts between the pectinolytic enzyme sets identified in genomes and the growth on pectins of different origin , 2012, BMC Genomics.

[102]  Svein Jarle Horn,et al.  Novel enzymes for the degradation of cellulose , 2012, Biotechnology for Biofuels.

[103]  Matthew W. Demas,et al.  Alternaria alternata allergen Alt a 1: a unique β-barrel protein dimer found exclusively in fungi. , 2012, The Journal of allergy and clinical immunology.

[104]  Xin Chen,et al.  dbCAN: a web resource for automated carbohydrate-active enzyme annotation , 2012, Nucleic Acids Res..

[105]  C. Xiloyannis,et al.  Soil Fungi-Plant Interaction , 2012 .

[106]  L. Concia,et al.  Functional Analysis of the Degradation of Cellulosic Substrates by a Chaetomium globosum Endophytic Isolate , 2012, Applied and Environmental Microbiology.

[107]  H. Ivanová,et al.  New record of the fungus Coniochaeta prunicola on peaches from Slovakia , 2012, Biologia.

[108]  You-Liang Peng,et al.  Different Chitin Synthase Genes Are Required for Various Developmental and Plant Infection Processes in the Rice Blast Fungus Magnaporthe oryzae , 2012, PLoS pathogens.

[109]  J. Nosanchuk,et al.  Fungal melanins: Biosynthesis and biological functions , 2012 .

[110]  A. Casadevall,et al.  Synthesis and assembly of fungal melanin , 2011, Applied Microbiology and Biotechnology.

[111]  Andrea Porras‐Alfaro,et al.  Hidden fungi, emergent properties: endophytes and microbiomes. , 2011, Annual review of phytopathology.

[112]  R. P. Vries,et al.  Fungal enzyme sets for plant polysaccharide degradation , 2011 .

[113]  J. van den Brink,et al.  Fungal enzyme sets for plant polysaccharide degradation , 2011, Applied Microbiology and Biotechnology.

[114]  Justin Powlowski,et al.  Curation of characterized glycoside hydrolases of Fungal origin , 2011, Database J. Biol. Databases Curation.

[115]  W. H. Zyl,et al.  The Lignicolous Fungus Coniochaeta pulveracea and Its Interactions with Syntrophic Yeasts from the Woody Phylloplane , 2011, Microbial Ecology.

[116]  K. Newsham.  A meta-analysis of plant responses to dark septate root endophytes. , 2011, The New phytologist.

[117]  M. Zain.  Impact of mycotoxins on humans and animals , 2011 .

[118]  Wentian Li,et al.  Volcano Plots in Analyzing differential Expressions with mRNA microarrays , 2011, J. Bioinform. Comput. Biol..

[119]  G. Bergstrom,et al.  Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi , 2011, Biotechnology for biofuels.

[120]  M. Busman,et al.  Fusarium verticillioides chitin synthases CHS5 and CHS7 are required for normal growth and pathogenicity , 2011, Current Genetics.

[121]  Kendra J. Lipinski,et al.  Diversity and distribution of soil fungal communities in a semiarid grassland , 2011, Mycologia.

[122]  N. Gow,et al.  Chitin synthesis and fungal pathogenesis , 2010, Current opinion in microbiology.

[123]  M. Schuster,et al.  The Myosin Motor Domain of Fungal Chitin Synthase V Is Dispensable for Vesicle Motility but Required for Virulence of the Maize Pathogen Ustilago maydis[W] , 2010, Plant Cell.

[124]  P. Crous,et al.  Coniochaeta (Lecythophora), Collophora gen. nov. and Phaeomoniella species associated with wood necroses of Prunus trees , 2010, Persoonia.

[125]  S. Kotchoni,et al.  Melanization of appressoria is critical for the pathogenicity of Diplocarpon rosae , 2010, Molecular Biology Reports.

[126]  Y. Liao,et al.  Disruption of the chitin synthase gene CHS1 from Fusarium asiaticum results in an altered structure of cell walls and reduced virulence. , 2010, Fungal genetics and biology : FG & B.

[127]  Joshua E. Elias,et al.  Target-Decoy Search Strategy for Mass Spectrometry-Based Proteomics , 2010, Proteome Bioinformatics.

[128]  D. Natvig,et al.  A general suite of fungal endophytes dominate the roots of two dominant grasses in a semiarid grassland , 2010 .

[129]  Sean R Eddy,et al.  A new generation of homology search tools based on probabilistic inference. , 2009, Genome informatics. International Conference on Genome Informatics.

[130]  P. D. de Wit,et al.  Fungal effector proteins. , 2009, Annual review of phytopathology.

[131]  Hyo Jin Lee,et al.  Gibberella zeae chitin synthase genes, GzCHS5 and GzCHS7, are required for hyphal growth, perithecia formation, and pathogenicity , 2009, Current Genetics.

[132]  A. Ohta,et al.  Class III Chitin Synthase ChsB of Aspergillus nidulans Localizes at the Sites of Polarized Cell Wall Synthesis and Is Required for Conidial Development , 2009, Eukaryotic Cell.

[133]  M. Mann,et al.  Universal sample preparation method for proteome analysis , 2009, Nature Methods.

[134]  J. Ketelaars,et al.  Colonization of torrefied grass fibers by plant beneficial microorganisms , 2009 .

[135]  P. Mcgee,et al.  Do plant endophytic and free-living Chaetomium species differ? , 2009 .

[136]  Y. Zhang,et al.  A class-wide phylogenetic assessment of Dothideomycetes , 2009, Studies in mycology.

[137]  S. Georgeault,et al.  Melanin is an essential component for the integrity of the cell wall of Aspergillus fumigatus conidia , 2009, BMC Microbiology.

[138]  O. Kniemeyer,et al.  Production of Pyomelanin, a Second Type of Melanin, via the Tyrosine Degradation Pathway in Aspergillus fumigatus , 2008, Applied and Environmental Microbiology.

[139]  Laura E. Green,et al.  Translocation of nitrogen and carbon integrates biotic crust and grass production in desert grassland , 2008 .

[140]  R. Sikora,et al.  Endophytes: An emerging tool for biological control , 2008 .

[141]  E. Birney,et al.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.

[142]  Navdeep Jaitly,et al.  DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra , 2008, Bioinform..

[143]  D. Natvig,et al.  Novel Root Fungal Consortium Associated with a Dominant Desert Grass , 2008, Applied and Environmental Microbiology.

[144]  D. Broadbent.  Antibiotics produced by fungi , 1966, The Botanical Review.

[145]  C. Lauber,et al.  Fungal control of nitrous oxide production in semiarid grassland , 2008 .

[146]  A. Jumpponen,et al.  Diversity, Function and Potential Applications of the Root-Associated Endophytes , 2008 .

[147]  Mark L. Blaxter,et al.  annot8r: GO, EC and KEGG annotation of EST datasets , 2008, BMC Bioinformatics.

[148]  M. Roncero,et al.  ChsVb, a Class VII Chitin Synthase Involved in Septation, Is Critical for Pathogenicity in Fusarium oxysporum , 2007, Eukaryotic Cell.

[149]  S. Werner,et al.  A chitin synthase with a myosin-like motor domain is essential for hyphal growth, appressorium differentiation, and pathogenicity of the maize anthracnose fungus Colletotrichum graminicola. , 2007, Molecular plant-microbe interactions : MPMI.

[150]  J. Latgé.  The cell wall: a carbohydrate armour for the fungal cell , 2007, Molecular microbiology.

[151]  Z. Nan,et al.  A new species, Embellisia astragali sp. nov., causing standing milk-vetch disease in China , 2007 .

[152]  Z. Nan,et al.  A new species, Embellisia astragali sp. nov., causing standing milk-vetch disease in China. , 2007, Mycologia.

[153]  R. Beaver,et al.  Chaetomium elatum (Kunze: Chaetomiaceae) as a root-colonizing fungus in avocado: is it a mutualist, cheater, commensalistic associate, or pathogen? , 2007, American journal of botany.

[154]  B. Dien,et al.  Lignocellulose-degrading enzymes produced by the ascomycete Coniochaeta ligniaria and related species: Application for a lignocellulosic substrate treatment , 2007 .

[155]  J. D. Graham,et al.  Relationship Between the Endophyte Embellisia spp. and the Toxic Alkaloid Swainsonine in Major Locoweed Species (Astragalus and Oxytropis) , 2007, Journal of Chemical Ecology.

[156]  Burkhard Morgenstern,et al.  AUGUSTUS: ab initio prediction of alternative transcripts , 2006, Nucleic Acids Res..

[157]  Rolf Apweiler,et al.  InterProScan: protein domains identifier , 2005, Nucleic Acids Res..

[158]  T. Doering,et al.  Eukaryotic UDP-Galactopyranose Mutase (GLF Gene) in Microbial and Metazoal Pathogens , 2005, Eukaryotic Cell.

[159]  M. Pedras,et al.  New sesquiterpenic phytotoxins establish unprecedented relationship between different groups of blackleg fungal isolates. , 2005, Bioorganic & medicinal chemistry.

[160]  A. Jumpponen,et al.  Seeking the elusive function of the root-colonising dark septate endophytic fungi , 2005 .

[161]  C. J. Rodrigues,et al.  Appressorium turgor pressure of Colletotrichum kahawae might have a role in coffee cuticle penetration , 2004, Mycologia.

[162]  S. Brunak,et al.  Improved prediction of signal peptides: SignalP 3.0. , 2004, Journal of molecular biology.

[163]  G. Salmond,et al.  The Nep1-like proteins-a growing family of microbial elicitors of plant necrosis. , 2004, Molecular plant pathology.

[164]  B. Barrell,et al.  Insight into the genome of Aspergillus fumigatus: analysis of a 922 kb region encompassing the nitrate assimilation gene cluster. , 2004, Fungal genetics and biology : FG & B.

[165]  John E. Linz,et al.  Clustered Pathway Genes in Aflatoxin Biosynthesis , 2004, Applied and Environmental Microbiology.

[166]  C. Specht,et al.  Loss of virulence in Ustilago maydis by Umchs6 gene disruption. , 2004, Research in microbiology.

[167]  M. Choquer,et al.  Disruption of Botrytis cinerea class I chitin synthase gene Bcchs1 results in cell wall weakening and reduced virulence. , 2003, Fungal genetics and biology : FG & B.

[168]  J. Bennett,et al.  Mycotoxins , 2003, Clinical Microbiology Reviews.

[169]  B. Thomma.  Alternaria spp.: from general saprophyte to specific parasite. , 2003, Molecular plant pathology.

[170]  R. A. Cramer,et al.  Cloning of a Gene Encoding an Alt a 1 Isoallergen Differentially Expressed by the Necrotrophic Fungus Alternaria brassicicola during Arabidopsis Infection , 2003, Applied and Environmental Microbiology.

[171]  A. Elbein,et al.  New insights on trehalose: a multifunctional molecule. , 2003, Glycobiology.

[172]  J. Barrow.  Atypical morphology of dark septate fungal root endophytes of Bouteloua in arid southwestern USA rangelands , 2003, Mycorrhiza.

[173]  A. Jumpponen.  Dark septate endophytes – are they mycorrhizal? , 2001, Mycorrhiza.

[174]  A. Krogh,et al.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. , 2001, Journal of molecular biology.

[175]  K. Kwon-Chung,et al.  A Developmentally Regulated Gene Cluster Involved in Conidial Pigment Biosynthesis in Aspergillus fumigatus , 1999, Journal of bacteriology.

[176]  J. Trappe,et al.  Dark septate endophytes: a review of facultative biotrophic root-colonizing fungi. , 1998, The New phytologist.

[177]  P. D. de Wit,et al.  Fungal avirulence genes: structure and possible functions. , 1998, Fungal genetics and biology : FG & B.

[178]  W. Knogge.  Fungal Infection of Plants. , 1996, The Plant cell.

[179]  R. Howard,et al.  Breaking and entering: host penetration by the fungal rice blast pathogen Magnaporthe grisea. , 1996, Annual review of microbiology.

[180]  G. Gooday.  The dynamics of hyphal growth , 1995 .

[181]  S. Kamoun,et al.  Potential Role of Elicitins in the Interaction between Phytophthora Species and Tobacco , 1994, Applied and environmental microbiology.

[182]  K. Wakamatsu,et al.  Eumelanin biosynthesis is regulated by coordinate expression of tyrosinase and tyrosinase-related protein-1 genes. , 1993, Experimental cell research.

[183]  W. Schäfer,et al.  The role of cutinase in fungal pathogenicity. , 1993, Trends in microbiology.

[184]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[185]  K. Clay.  Fungal Endophytes of Grasses: A Defensive Mutualism between Plants and Fungi , 1988 .

[186]  K. Kadam,et al.  Study of lignin biotransformation by Aspergillus fumigatus and white‐rot fungi using 14C‐labeled and unlabeled kraft lignins , 1986, Biotechnology and Bioengineering.

[187]  M. Wheeler,et al.  Biosynthesis and Functions of Fungal Melanins , 1986 .

[188]  J. Gressel,et al.  Lignin degrading ability of selected aspergillus Spp. , 1984 .

[189]  D. Mahoney,et al.  CONIOCHAETA EXTRAMUNDANA, WITH A SYNOPSIS OF OTHER CONIOCHAETA SPECIES , 1981 .

[190]  T. Highley.  Influence of carbon source on cellulase activity of white-rot and brown-rot fungi , 2007 .

[191]  A. H. Cook,et al.  Production of antibiotics by fungi. , 1945, British journal of experimental pathology.