The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome.
暂无分享,去创建一个
A. Goesmann | H. Neuweger | J. Blom | T. Bekel | A. Pühler | Burkhard Linke | D. Wibberg | A. Schlüter | S. Weidner | Susanne Schneiker-Bekel | Frank-Jörg Vorhölter | M. Stiens | Michael Stiens
[1] Alexander Goesmann,et al. EDGAR: A software framework for the comparative analysis of prokaryotic genomes , 2009, BMC Bioinformatics.
[2] P. Reeves,et al. Membrane topology of the Salmonella enterica serovar Typhimurium Group B O-antigen translocase Wzx. , 2008, FEMS microbiology letters.
[3] M. F. Del Papa,et al. Conjugal properties of the Sinorhizobium meliloti plasmid mobilome. , 2008, FEMS microbiology ecology.
[4] A. Goesmann,et al. Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11. , 2008, Journal of biotechnology.
[5] L. Delbaere,et al. Structural, Functional and Calorimetric Investigation of MosA, a Dihydrodipicolinate Synthase from Sinorhizobium meliloti L5–30, does not Support Involvement in Rhizopine Biosynthesis , 2008, Chembiochem : a European journal of chemical biology.
[6] J. Schmid,et al. The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. , 2008, Journal of biotechnology.
[7] A. Pühler,et al. Prevalence of pSmeSM11a-like plasmids in indigenous Sinorhizobium meliloti strains isolated in the course of a field release experiment with genetically modified S. meliloti strains. , 2008, FEMS microbiology ecology.
[8] Kathryn M. Jones,et al. How rhizobial symbionts invade plants: the Sinorhizobium–Medicago model , 2007, Nature Reviews Microbiology.
[9] A. Pühler,et al. Sequence analysis of the 181-kb accessory plasmid pSmeSM11b, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experiment. , 2007, FEMS microbiology letters.
[10] C. Whitfield,et al. The 3D structure of a periplasm-spanning platform required for assembly of group 1 capsular polysaccharides in Escherichia coli , 2007, Proceedings of the National Academy of Sciences.
[11] F. Martínez-Abarca,et al. Dispersion of the RmInt1 group II intron in the Sinorhizobium meliloti genome upon acquisition by conjugative transfer , 2006, Nucleic acids research.
[12] Long-Term Field Release of Bioluminescent Sinorhizobium meliloti Strains to Assess the Influence of a recA Mutation on the Strains' Survival , 2006, Microbial Ecology.
[13] C. Whitfield. Biosynthesis and assembly of capsular polysaccharides in Escherichia coli. , 2006, Annual review of biochemistry.
[14] A. Pühler,et al. Sequence Analysis of the 144-Kilobase Accessory Plasmid pSmeSM11a, Isolated from a Dominant Sinorhizobium meliloti Strain Identified during a Long-Term Field Release Experiment , 2006, Applied and Environmental Microbiology.
[15] Julio Collado-Vides,et al. The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[16] C. Landry,et al. Large-scale genetic variation of the symbiosis-required megaplasmid pSymA revealed by comparative genomic analysis of Sinorhizobium meliloti natural strains , 2005, BMC Genomics.
[17] Jianping Xu,et al. Novel DNA Sequences from Natural Strains of the Nitrogen-Fixing Symbiotic Bacterium Sinorhizobium meliloti , 2005, Applied and Environmental Microbiology.
[18] James R. Knight,et al. Genome sequencing in microfabricated high-density picolitre reactors , 2005, Nature.
[19] E. Cascales,et al. Biogenesis, architecture, and function of bacterial type IV secretion systems. , 2005, Annual review of microbiology.
[20] Matthew Berriman,et al. ACT: the Artemis comparison tool , 2005, Bioinform..
[21] Daniela Bartels,et al. BACCardI-a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison , 2005, Bioinform..
[22] E. Cascales,et al. Structural and dynamic properties of bacterial Type IV secretion systems (Review) , 2005, Molecular membrane biology.
[23] Trevor C. Charles,et al. Expression of an Exogenous 1-Aminocyclopropane-1-Carboxylate Deaminase Gene in Sinorhizobium meliloti Increases Its Ability To Nodulate Alfalfa , 2004, Applied and Environmental Microbiology.
[24] I. Kuntz,et al. Inhibition of Mycobacterium tuberculosis AhpD, an Element of the Peroxiredoxin Defense against Oxidative Stress , 2004, Antimicrobial Agents and Chemotherapy.
[25] D. R. Palmer,et al. MosA, a protein implicated in rhizopine biosynthesis in Sinorhizobium meliloti L5-30, is a dihydrodipicolinate synthase. , 2004, Journal of molecular biology.
[26] E. Kondorosi,et al. Cell cycle regulation in the course of nodule organogenesis in Medicago , 2000, Plant Molecular Biology.
[27] P. Papp,et al. The bacterial attachment site of the temperate Rhizobium phage 16-3 overlaps the 3′ end of a putative proline tRNA gene , 1993, Molecular and General Genetics MGG.
[28] B Marshall,et al. Gene Ontology Consortium: The Gene Ontology (GO) database and informatics resource , 2004, Nucleic Acids Res..
[29] Woojun Park,et al. Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment. , 2004, International journal of systematic and evolutionary microbiology.
[30] B. Glick,et al. Prevalence of 1-aminocyclopropane-1-carboxylate deaminase in Rhizobium spp. , 2004, Antonie van Leeuwenhoek.
[31] L. Orosz,et al. The detailed physical map of the temperate phage 16-3 of Rhizobium meliloti 41 , 2004, Molecular and General Genetics MGG.
[32] C. Claudel-Renard,et al. Enzyme-specific profiles for genome annotation: PRIAM. , 2003, Nucleic acids research.
[33] E. Cascales,et al. The versatile bacterial type IV secretion systems , 2003, Nature Reviews Microbiology.
[34] Darren A. Natale,et al. The COG database: an updated version includes eukaryotes , 2003, BMC Bioinformatics.
[35] Bernard R. Glick,et al. Rhizobium leguminosarum Biovar viciae 1-Aminocyclopropane-1-Carboxylate Deaminase Promotes Nodulation of Pea Plants , 2003, Applied and Environmental Microbiology.
[36] L. Major,et al. A structural perspective on the enzymes that convert dTDP-d-glucose into dTDP-l-rhamnose. , 2003, Biochemical Society transactions.
[37] R. Giegerich,et al. GenDB--an open source genome annotation system for prokaryote genomes. , 2003, Nucleic acids research.
[38] M. Minnick,et al. Differential expression of the invasion-associated locus B (ialB) gene of Bartonella bacilliformis in response to environmental cues. , 2003, Microbial pathogenesis.
[39] Alfred Pühler,et al. Genomics insights into symbiotic nitrogen fixation. , 2003, Current opinion in biotechnology.
[40] E. Biondi,et al. Genetic relationship of Sinorhizobium meliloti and Sinorhizobium medicae strains isolated from Caucasian region. , 2003, FEMS microbiology letters.
[41] R. Webby,et al. Comparative Sequence Analysis of the Symbiosis Island of Mesorhizobium loti Strain R7A , 2002, Journal of bacteriology.
[42] Adam C Resnick,et al. UDP-glucuronate Decarboxylase, a Key Enzyme in Proteoglycan Synthesis , 2002, The Journal of Biological Chemistry.
[43] T. Shiba,et al. Genes from Pseudomonas sp. Strain BS Involved in the Conversion of l-2-Amino-Δ2-Thiazolin-4-Carbonic Acid to l-Cysteine , 2002, Applied and Environmental Microbiology.
[44] T. Ohmachi,et al. Identification, Cloning, and Sequencing of the Genes Involved in the Conversion of D,L-2-Amino-Δ2-Thiazoline-4-Carboxylic Acid to … , 2002 .
[45] Steven Salzberg,et al. A probabilistic method for identifying start codons in bacterial genomes , 2001, Bioinform..
[46] R. W. Davis,et al. Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[47] A. Goffeau,et al. Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021 , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[48] Kim Wong,et al. The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[49] Ronald W. Davis,et al. The Composite Genome of the Legume Symbiont Sinorhizobium meliloti , 2001, Science.
[50] S. Salzberg,et al. Evidence for symmetric chromosomal inversions around the replication origin in bacteria , 2000, Genome Biology.
[51] S. Negoro. Biodegradation of nylon oligomers , 2000, Applied Microbiology and Biotechnology.
[52] E. Willery,et al. Novel Topological Features of FhaC, the Outer Membrane Transporter Involved in the Secretion of the Bordetella pertussis Filamentous Hemagglutinin* , 2000, The Journal of Biological Chemistry.
[53] I. Oresnik,et al. Megaplasmid pRme2011a of Sinorhizobium meliloti Is Not Required for Viability , 2000, Journal of bacteriology.
[54] J. Cirillo,et al. Identification of novel loci involved in entry by Legionella pneumophila. , 2000, Microbiology.
[55] E. Willery,et al. Molecular characterization of Bordetella bronchiseptica filamentous haemagglutinin and its secretion machinery. , 2000, Microbiology.
[56] Cloning and Identification of Conjugative Transfer Origins in the Rhizobium meliloti Genome , 1998, Journal of bacteriology.
[57] R. Morona,et al. Overexpression and topology of the Shigella flexneri O‐antigen polymerase (Rfc/Wzy) , 1998, Molecular microbiology.
[58] C. Vernotte,et al. Resistance to nitrophenolic herbicides and metronidazole in the cyanobacterium Synechocystis sp. PCC 6803 as a result of the inactivation of a nitroreductase‐like protein encoded by drgA gene , 1998, FEBS letters.
[59] P. Green,et al. Consed: a graphical tool for sequence finishing. , 1998, Genome research.
[60] K. Niehaus,et al. The role of microbial surface polysaccharides in the Rhizobium-legume interaction. , 1998, Sub-cellular biochemistry.
[61] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[62] S. Eddy,et al. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.
[63] A. Pühler,et al. The 32-kilobase exp gene cluster of Rhizobium meliloti directing the biosynthesis of galactoglucan: genetic organization and properties of the encoded gene products , 1997, Journal of bacteriology.
[64] D. Maskell,et al. Bacterial polysaccharide synthesis and gene nomenclature. , 1996, Trends in microbiology.
[65] J. Borneman,et al. A newly discovered gene, tfuA, involved in the production of the ribosomally synthesized peptide antibiotic trifolitoxin , 1996, Journal of bacteriology.
[66] M. McNeil,et al. Galactofuranose biosynthesis in Escherichia coli K-12: identification and cloning of UDP-galactopyranose mutase , 1996, Journal of bacteriology.
[67] Peter M. Gresshoff,et al. Biology of plant-microbe interactions , 1996 .
[68] T. Yomo,et al. A plasmid encoding enzymes for nylon oligomer degradation: nucleotide sequence and analysis of pOAD2. , 1995, Microbiology.
[69] J. Mercado-Blanco,et al. Melanin production by Rhizobium meliloti GR4 is linked to nonsymbiotic plasmid pRmeGR4b: cloning, sequencing, and expression of the tyrosinase gene mepA , 1993, Journal of bacteriology.
[70] P. Murphy,et al. The Rhizobium meliloti rhizopine mos locus is a mosaic structure facilitating its symbiotic regulation , 1993, Journal of bacteriology.
[71] T. L. Reuber,et al. Biosynthesis of succinoglycan, a symbiotically important exopolysaccharide of Rhizobium meliloti , 1993, Cell.
[72] T. Yomo,et al. No stop codons in the antisense strands of the genes for nylon oligomer degradation. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[73] Trevor C. Charles,et al. Analysis of a 1600-kilobase Rhizobium meliloti megaplasmid using defined deletions generated in vivo. , 1991, Genetics.
[74] H. Okada,et al. High homology between 6-aminohexanoate-cyclic-dimer hydrolases of Flavobacterium and Pseudomonas strains , 1989, Journal of bacteriology.
[75] E. Jacobson,et al. UDP Glucuronate Decarboxylase and Synthesis of Capsular Polysaccharide in Cryptococcus neoformans , 1982, Journal of bacteriology.