Proposed lipocalin fold for apolipoprotein M based on bioinformatics and site‐directed mutagenesis

[1]  T. Blundell,et al.  Comparative protein modelling by satisfaction of spatial restraints. , 1993, Journal of molecular biology.

[2]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[3]  W. Kabsch,et al.  Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features , 1983, Biopolymers.

[4]  A. Sali.  100,000 protein structures for the biologist , 1998, Nature Structural Biology.

[5]  D. Brutlag,et al.  Highly specific protein sequence motifs for genome analysis. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[6]  B. Honig,et al.  Calculation of electrostatic potentials in an enzyme active site , 1987, Nature.

[7]  P. Venge,et al.  Lipocalins as biochemical markers of disease. , 2000, Biochimica et biophysica acta.

[8]  J. Thornton,et al.  PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .

[9]  David C. Jones,et al.  CATH--a hierarchic classification of protein domain structures. , 1997, Structure.

[10]  K. Sharp,et al.  Electrostatic interactions in macromolecules: theory and applications. , 1990, Annual review of biophysics and biophysical chemistry.

[11]  G J Williams,et al.  The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1977, Journal of molecular biology.

[12]  A G Murzin,et al.  SCOP: a structural classification of proteins database for the investigation of sequences and structures. , 1995, Journal of molecular biology.

[13]  P. Alaupovic,et al.  Significance of apolipoproteins for structure, function, and classification of plasma lipoproteins. , 1996, Methods in enzymology.

[14]  R. Norel,et al.  Electrostatic aspects of protein-protein interactions. , 2000, Current opinion in structural biology.

[15]  José A Fernández,et al.  Cardiolipin is a normal component of human plasma lipoproteins. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[16]  U. K. Laemmli,et al.  Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 , 1970, Nature.

[17]  D R Flower,et al.  The lipocalin protein family: structure and function. , 1996, The Biochemical journal.

[18]  D. Flower.  The lipocalin protein family: A role in cell regulation , 1994, FEBS letters.

[19]  K. Sharp,et al.  Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons , 1991, Proteins.

[20]  A. Skerra.  Lipocalins as a scaffold. , 2000, Biochimica et biophysica acta.

[21]  R. Bishop,et al.  The bacterial lipocalins. , 2000, Biochimica et biophysica acta.

[22]  H. Nakamura,et al.  Roles of electrostatic interaction in proteins , 1996, Quarterly Reviews of Biophysics.

[23]  Michael Levitt,et al.  A brighter future for protein structure prediction , 1999, Nature Structural Biology.

[24]  Terri K. Attwood,et al.  FingerPRINTScan: intelligent searching of the PRINTS motif database , 1999, Bioinform..

[25]  D R Flower,et al.  The lipocalin protein family: structural and sequence overview. , 2000, Biochimica et biophysica acta.

[26]  B. Dahlbäck,et al.  A Novel Human Apolipoprotein (apoM)* , 1999, The Journal of Biological Chemistry.

[27]  D. Lipman,et al.  Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[28]  D R Flower,et al.  Lipocalins: unity in diversity. , 2000, Biochimica et biophysica acta.

[29]  Alexander D. MacKerell,et al.  All-atom empirical potential for molecular modeling and dynamics studies of proteins. , 1998, The journal of physical chemistry. B.

[30]  S. Henikoff,et al.  Protein family classification based on searching a database of blocks. , 1994, Genomics.

[31]  T. Bratt,et al.  Lipocalins and cancer. , 2000, Biochimica et biophysica acta.

[32]  J Moult,et al.  From fold to function. , 2000, Current opinion in structural biology.

[33]  L. Lögdberg,et al.  Immunocalins: a lipocalin subfamily that modulates immune and inflammatory responses. , 2000, Biochimica et biophysica acta.

[34]  M. Karplus,et al.  CHARMM: A program for macromolecular energy, minimization, and dynamics calculations , 1983 .

[35]  H. Kessler,et al.  The solution structure and dynamics of human neutrophil gelatinase-associated lipocalin. , 1999, Journal of molecular biology.

[36]  R. Mäntyjärvi,et al.  Lipocalins as allergens. , 2000, Biochimica et biophysica acta.

[37]  A. Gotto,et al.  Apolipoproteins: pathophysiology and clinical implications. , 1996, Methods in enzymology.

[38]  C. Fielding,et al.  Distribution and functions of lecithin:cholesterol acyltransferase and cholesteryl ester transfer protein in plasma lipoproteins. Evidence for a functional unit containing these activities together with apolipoproteins A-I and D that catalyzes the esterification and transfer of cell-derived choleste , 1989, The Journal of biological chemistry.

[39]  T A Jones,et al.  Crystallographic refinement of human serum retinol binding protein at 2Å resolution , 1990, Proteins.

[40]  W. Pearson.  Rapid and sensitive sequence comparison with FASTP and FASTA. , 1990, Methods in enzymology.

[41]  A. North,et al.  Pheromone binding to two rodent urinary proteins revealed by X-ray crystallography , 1992, Nature.