Structure and function of histone methylation binding proteins.
暂无分享,去创建一个
[1] Lili Wan,et al. SMN Deficiency Causes Tissue-Specific Perturbations in the Repertoire of snRNAs and Widespread Defects in Splicing , 2008, Cell.
[2] T. Bestor,et al. Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L , 2004, Nature.
[3] John D Aitchison,et al. Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs. , 2006, Molecular cell.
[4] Junying Yuan,et al. The PHD Finger of the Chromatin-Associated Protein ING2 Functions as a Nuclear Phosphoinositide Receptor , 2003, Cell.
[5] Alexey G. Murzin,et al. Structure of the HP1 chromodomain bound to histone H3 methylated at lysine 9 , 2002, Nature.
[6] Qiang Zhao,et al. Structure of Human Spindlin1 , 2007, Journal of Biological Chemistry.
[7] N. Walworth,et al. The Plant Homeodomain Fingers of Fission Yeast Msc1 Exhibit E3 Ubiquitin Ligase Activity* , 2007, Journal of Biological Chemistry.
[8] S. Mohammed,et al. Nuclear PtdIns5P as a transducer of stress signaling: an in vivo role for PIP4Kbeta. , 2006, Molecular cell.
[9] I. Vetter,et al. ACF1 improves the effectiveness of nucleosome mobilization by ISWI through PHD–histone contacts , 2004, The EMBO journal.
[10] Stuart L. Schreiber,et al. Active genes are tri-methylated at K4 of histone H3 , 2002, Nature.
[11] C P Ponting,et al. Tudor domains in proteins that interact with RNA. , 1997, Trends in biochemical sciences.
[12] S. Frye,et al. Accessing protein methyltransferase and demethylase enzymology using microfluidic capillary electrophoresis. , 2010, Chemistry & biology.
[13] A. Mahowald,et al. tudor, a gene required for assembly of the germ plasm in Drosophila melanogaster , 1985, Cell.
[14] Matthias Mann,et al. Selective Anchoring of TFIID to Nucleosomes by Trimethylation of Histone H3 Lysine 4 , 2007, Cell.
[15] Sandipan Chatterjee,et al. Wnt/wingless Signaling Requires Bcl9/legless-mediated Recruitment of Pygopus to the Nuclear Beta-catenin-tcf Complex , 2022 .
[16] J. Wong,et al. JMJD2A Is a Novel N-CoR-Interacting Protein and Is Involved in Repression of the Human Transcription Factor Achaete Scute-Like Homologue 2 (ASCL2/Hash2) , 2005, Molecular and Cellular Biology.
[17] Ian M. Fingerman,et al. Proteome-wide Analysis in Saccharomyces cerevisiae Identifies Several PHD Fingers as Novel Direct and Selective Binding Modules of Histone H3 Methylated at Either Lysine 4 or Lysine 36* , 2007, Journal of Biological Chemistry.
[18] C. Allis,et al. DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA , 2007, Nature.
[19] Youngchang Kim,et al. Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains. , 2003, Genes & development.
[20] R. Schneider,et al. Chatting histone modifications in mammals. , 2010, Briefings in functional genomics.
[21] Andrew J. Bannister,et al. Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain , 2001, Nature.
[22] Mariann Bienz,et al. A new nuclear component of the Wnt signalling pathway , 2002, Nature Cell Biology.
[23] H. Erdjument-Bromage,et al. Histone demethylation by a family of JmjC domain-containing proteins , 2006, Nature.
[24] K. Riabowol,et al. Different HATS of the ING1 gene family. , 2002, Trends in cell biology.
[25] T. Bestor,et al. Dnmt3L and the Establishment of Maternal Genomic Imprints , 2001, Science.
[26] David S. Parker,et al. Pygopus, a nuclear PHD-finger protein required for Wingless signaling in Drosophila. , 2002, Development.
[27] A. Shilatifard,et al. Covalent modifications of histones during development and disease pathogenesis , 2007, Nature Structural &Molecular Biology.
[28] T. Kumanishi,et al. Cloning of a novel murine gene Sfmbt, Scm-related gene containing four mbt domains, structurally belonging to the Polycomb group of genes. , 2000, Gene.
[29] N. Zeleznik-Le,et al. MLL repression domain interacts with histone deacetylases, the polycomb group proteins HPC2 and BMI-1, and the corepressor C-terminal-binding protein , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[30] Thomas A. Milne,et al. WDR5 Associates with Histone H3 Methylated at K4 and Is Essential for H3 K4 Methylation and Vertebrate Development , 2005, Cell.
[31] P. Peterson,et al. The autoimmune regulator PHD finger binds to non-methylated histone H3K4 to activate gene expression , 2008, EMBO Reports.
[32] Xiaodong Cheng,et al. Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation , 2007, Nature.
[33] M. Höckner,et al. Coping with cadmium exposure in various ways: the two helicid snails Helix pomatia and Cantareus aspersus share the metal transcription factor-2, but differ in promoter organization and transcription of their Cd-metallothionein genes. , 2009, Journal of experimental zoology. Part A, Ecological genetics and physiology.
[34] T. Gibson,et al. Nucleosome binding by the bromodomain and PHD finger of the transcriptional cofactor p300. , 2004, Journal of molecular biology.
[35] Y. Adachi,et al. Phosphorylation and Rapid Relocalization of 53BP1 to Nuclear Foci upon DNA Damage , 2001, Molecular and Cellular Biology.
[36] Anjanabha Saha,et al. ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression , 2006, Nature.
[37] Junjie Chen,et al. Tumor Suppressor P53 Binding Protein 1 (53bp1) Is Involved in DNA Damage–Signaling Pathways , 2001, The Journal of cell biology.
[38] T. Hung,et al. Histone H3K4me3 binding is required for the DNA repair and apoptotic activities of ING1 tumor suppressor. , 2008, Journal of molecular biology.
[39] J. Mornon,et al. The human EBNA-2 coactivator p100: multidomain organization and relationship to the staphylococcal nuclease fold and to the tudor protein involved in Drosophila melanogaster development. , 1997, The Biochemical journal.
[40] Ming-Ming Zhou,et al. Structural insights into human KAP1 PHD finger–bromodomain and its role in gene silencing , 2008, Nature Structural &Molecular Biology.
[41] J. Min,et al. Structural basis for specific binding of Polycomb chromodomain to histone H3 methylated at Lys 27. , 2003, Genes & development.
[42] Chadwick M. Hales,et al. Direct Interaction of the Spinal Muscular Atrophy Disease Protein SMN with the Small Nucleolar RNA-associated Protein Fibrillarin* , 2001, The Journal of Biological Chemistry.
[43] Chao Xu,et al. Binding of different histone marks differentially regulates the activity and specificity of polycomb repressive complex 2 (PRC2) , 2010, Proceedings of the National Academy of Sciences.
[44] C. Tsang,et al. Nutrient regulates Tor1 nuclear localization and association with rDNA promoter , 2006, Nature.
[45] S. Jacobs,et al. Structure of HP1 Chromodomain Bound to a Lysine 9-Methylated Histone H3 Tail , 2002, Science.
[46] Sean D. Taverna,et al. How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers , 2007, Nature Structural &Molecular Biology.
[47] Danny Reinberg,et al. Histone lysine methylation: a signature for chromatin function. , 2003, Trends in genetics : TIG.
[48] S. Fields,et al. Two cellular proteins that bind to wild-type but not mutant p53. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[49] Irene Luque,et al. Molecular Basis of Histone H3K4me3 Recognition by ING4* , 2008, Journal of Biological Chemistry.
[50] K. Riabowol,et al. After a decade of study-ING, a PHD for a versatile family of proteins. , 2007, Trends in biochemical sciences.
[51] Sebastian Maurer-Stroh,et al. The Tudor domain 'Royal Family': Tudor, plant Agenet, Chromo, PWWP and MBT domains. , 2003, Trends in biochemical sciences.
[52] R. Guérois,et al. The Tudor tandem of 53BP1: a new structural motif involved in DNA and RG-rich peptide binding. , 2004, Structure.
[53] Abdellah Allali-Hassani,et al. L3MBTL1 recognition of mono- and dimethylated histones , 2007, Nature Structural &Molecular Biology.
[54] Wei Yang,et al. The plant homeodomain finger of RAG2 recognizes histone H3 methylated at both lysine-4 and arginine-2 , 2007, Proceedings of the National Academy of Sciences.
[55] Xinhua Lin,et al. pygopus Encodes a nuclear protein essential for wingless/Wnt signaling. , 2002, Development.
[56] T. Jenuwein,et al. PHF8 activates transcription of rRNA genes through H3K4me3 binding and H3K9me1/2 demethylation , 2010, Nature Structural &Molecular Biology.
[57] M. Horikoshi,et al. Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain. , 2008, Journal of molecular biology.
[58] J. Simon,et al. Expression and properties of wild-type and mutant forms of the Drosophila sex comb on midleg (SCM) repressor protein. , 1998, Genetics.
[59] A. Mirsky,et al. ACETYLATION AND METHYLATION OF HISTONES AND THEIR POSSIBLE ROLE IN THE REGULATION OF RNA SYNTHESIS. , 1964, Proceedings of the National Academy of Sciences of the United States of America.
[60] L. Serpell,et al. Crystal structure of human 53BP1 BRCT domains bound to p53 tumour suppressor , 2002, The EMBO journal.
[61] J. Zang,et al. Cloning, purification, crystallization and preliminary crystallographic analysis of the tandem tudor domain of Sgf29 from Saccharomyces cerevisiae. , 2010, Acta crystallographica. Section F, Structural biology and crystallization communications.
[62] D. Moazed,et al. Heterochromatin and Epigenetic Control of Gene Expression , 2003, Science.
[63] T. Pawson,et al. Structural basis for recognition of arginine methylated Piwi proteins by the extended Tudor domain , 2010, Proceedings of the National Academy of Sciences.
[64] Yang Shi,et al. Recognition of unmethylated histone H3 lysine 4 links BHC80 to LSD1-mediated gene repression , 2007, Nature.
[65] S. Desiderio,et al. A plant homeodomain in RAG-2 that binds Hypermethylated lysine 4 of histone H3 is necessary for efficient antigen-receptor-gene rearrangement. , 2007, Immunity.
[66] Yi Zhang,et al. Recognition of Histone H3 Lysine-4 Methylation by the Double Tudor Domain of JMJD2A , 2006, Science.
[67] A. Murzin,et al. Crystal Structure of the Malignant Brain Tumor (MBT) Repeats in Sex Comb on Midleg-like 2 (SCML2)* , 2003, Journal of Biological Chemistry.
[68] S. Khorasanizadeh,et al. Double chromodomains cooperate to recognize the methylated histone H3 tail , 2005, Nature.
[69] L. L. Searles,et al. Distinct domains mediate the early and late functions of the Drosophila ovarian tumor proteins , 2001, Mechanisms of Development.
[70] Karl Mechtler,et al. Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins , 2001, Nature.
[71] Michael Sattler,et al. High-resolution X-ray and NMR structures of the SMN Tudor domain: conformational variation in the binding site for symmetrically dimethylated arginine residues. , 2003, Journal of molecular biology.
[72] A. Imbalzano,et al. Accessibility of nucleosomal DNA to V(D)J cleavage is modulated by RSS positioning and HMG1. , 1998, Molecular cell.
[73] T. Kouzarides. Chromatin Modifications and Their Function , 2007, Cell.
[74] G. Blobel,et al. Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin. , 2005, Molecular cell.
[75] Malgorzata Schelder,et al. A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities. , 2006, Genes & development.
[76] D. Livingston,et al. Structure of the 53BP1 BRCT region bound to p53 and its comparison to the Brca1 BRCT structure. , 2002, Genes & development.
[77] I. Grummt,et al. The PHD Finger/Bromodomain of NoRC Interacts with Acetylated Histone H4K16 and Is Sufficient for rDNA Silencing , 2005, Current Biology.
[78] M. Lieber,et al. The DNA methyltransferase-like protein DNMT3L stimulates de novo methylation by Dnmt3a , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[79] A. Ehrenhofer-Murray,et al. Chromatin dynamics at DNA replication, transcription and repair. , 2004, European journal of biochemistry.
[80] Sonja J. Prohaska,et al. Innovation in gene regulation: the case of chromatin computation. , 2010, Journal of theoretical biology.
[81] R. King,et al. Cell biology: Nondisjunction, aneuploidy and tetraploidy (Reply) , 2006, Nature.
[82] S. Frye,et al. Epigenetics: tools and technologies. , 2010, Drug discovery today. Technologies.
[83] Yi Zhang,et al. Tudor, MBT and chromo domains gauge the degree of lysine methylation , 2006, EMBO reports.
[84] C. Allis,et al. The language of covalent histone modifications , 2000, Nature.
[85] T. Kouzarides. Histone methylation in transcriptional control. , 2002, Current opinion in genetics & development.
[86] D. Reinberg,et al. L3MBTL1, a Histone-Methylation-Dependent Chromatin Lock , 2007, Cell.
[87] Functional Characterization of JMJD2A, a Histone Deacetylase- and Retinoblastoma-binding Protein* , 2005, Journal of Biological Chemistry.
[88] M. Schapira,et al. Finding Inspiration in the Protein Data Bank to Chemically Antagonize Readers of the Histone Code , 2010, Molecular informatics.
[89] V. Rybin,et al. Decoding of Methylated Histone H3 Tail by the Pygo-BCL9 Wnt Signaling Complex , 2008, Molecular cell.
[90] D. Reinberg,et al. Histone H3 Lys 4 methylation: caught in a bind? , 2006, Genes & development.
[91] Ming-Ming Zhou,et al. Keeping it in the family: diverse histone recognition by conserved structural folds , 2010, Critical reviews in biochemistry and molecular biology.
[92] Wolfgang Fischle,et al. Structural basis for lower lysine methylation state-specific readout by MBT repeats of L3MBTL1 and an engineered PHD finger. , 2007, Molecular cell.
[93] H. Leonhardt,et al. The multi-domain protein Np95 connects DNA methylation and histone modification , 2009, Nucleic acids research.
[94] Ming-Ming Zhou,et al. PHD domain-mediated E3 ligase activity directs intramolecular sumoylation of an adjacent bromodomain required for gene silencing. , 2007, Molecular cell.
[95] Or Gozani,et al. The Yng1p Plant Homeodomain Finger Is a Methyl-Histone Binding Module That Recognizes Lysine 4-Methylated Histone H3 , 2006, Molecular and Cellular Biology.
[96] T. Umehara,et al. Structural insight into the zinc finger CW domain as a histone modification reader. , 2010, Structure.
[97] M. Gallardo,et al. RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination , 2007, Nature.
[98] Georges Mer,et al. Distinct binding modes specify the recognition of methylated histones H3K4 and H4K20 by JMJD2A-tudor , 2008, Nature Structural &Molecular Biology.
[99] V. Rybin,et al. Structural and functional analyses of methyl‐lysine binding by the malignant brain tumour repeat protein Sex comb on midleg , 2007, EMBO reports.
[100] P. Boccuni,et al. Histone H4 lysine 20 monomethylation promotes transcriptional repression by L3MBTL1 , 2008, Oncogene.
[101] Christoph H Borchers,et al. Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast. , 2003, Genes & development.
[102] T. Halazonetis,et al. P53 Binding Protein 1 (53bp1) Is an Early Participant in the Cellular Response to DNA Double-Strand Breaks , 2000, The Journal of cell biology.
[103] S. Fugmann,et al. The PHD domain of the sea urchin RAG2 homolog, SpRAG2L, recognizes dimethylated lysine 4 in histone H3 tails. , 2008, Developmental and comparative immunology.
[104] V. Verkhusha,et al. Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2 , 2006, Nature.
[105] T. Pawson,et al. Mouse Piwi interactome identifies binding mechanism of Tdrkh Tudor domain to arginine methylated Miwi , 2009, Proceedings of the National Academy of Sciences.
[106] Georges Mer,et al. Structural Basis for the Methylation State-Specific Recognition of Histone H4-K20 by 53BP1 and Crb2 in DNA Repair , 2006, Cell.
[107] M. Sattler,et al. Tudor hooks up with DNA repair , 2007, Nature Structural &Molecular Biology.
[108] Thomas A. Milne,et al. A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling , 2006, Nature.
[109] G. Stier,et al. SMN Tudor domain structure and its interaction with the Sm proteins , 2001, Nature Structural Biology.
[110] John J. Wyrick,et al. Ctk Complex-Mediated Regulation of Histone Methylation by COMPASS , 2006, Molecular and Cellular Biology.
[111] Ali Shilatifard,et al. Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression. , 2006, Annual review of biochemistry.
[112] Monika Zwerger,et al. Lamin B receptor , 2010, Nucleus.
[113] D. Patel,et al. Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF , 2006, Nature.
[114] A. Shilatifard,et al. Molecular regulation of histone H3 trimethylation by COMPASS and the regulation of gene expression. , 2005, Molecular cell.
[115] Matthieu Schapira,et al. Structural genomics of histone tail recognition , 2010, Bioinform..
[116] H. Sass,et al. The Drosophila melanogaster tumor suppressor gene lethal(3)malignant brain tumor encodes a proline-rich protein with a novel zinc finger , 1995, Mechanisms of Development.