An Evaluation of Atlas Selection Methods for Atlas-Based Automatic Segmentation in Radiotherapy Treatment Planning

Atlas-based automatic segmentation is used in radiotherapy planning to accelerate the delineation of organs at risk (OARs). Atlas selection has been proposed as a way to improve the accuracy and execution time of segmentation, assuming that, the more similar the atlas is to the patient, the better the results will be. This paper presents an analysis of atlas selection methods in the context of radiotherapy treatment planning. For a range of commonly contoured OARs, a thorough comparison of a large class of typical atlas selection methods has been performed. For this evaluation, clinically contoured CT images of the head and neck ( ${N}={316}$ ) and thorax ( ${N}={280}$ ) were used. The state-of-the-art intensity and deformation similarity-based atlas selection methods were found to compare poorly to perfect atlas selection. Counter-intuitively, atlas selection methods based on a fixed set of representative atlases outperformed atlas selection methods based on the patient image. This study suggests that atlas-based segmentation with currently available selection methods compares poorly to the potential best performance, hampering the clinical utility of atlas-based segmentation. Effective atlas selection remains an open challenge in atlas-based segmentation for radiotherapy planning.

[1]  Lei Dong,et al.  Automatic Segmentation of Parotids from CT Scans Using Multiple Atlases , 2010 .

[2]  Jim Piper,et al.  Optimal atlas selection using image similarities in a trained regression model to predict performance , 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

[3]  Josien P. W. Pluim,et al.  Fast Automatic Multi-atlas Segmentation of the Prostate from 3D MR Images , 2011, Prostate Cancer Imaging.

[4]  Mert R. Sabuncu,et al.  Image-driven population analysis through mixture modeling , 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[5]  Yuankai Huo,et al.  Multi-atlas learner fusion: An efficient segmentation approach for large-scale data , 2015, Medical Image Anal..

[6]  Mert R. Sabuncu,et al.  Multi-atlas segmentation of biomedical images: A survey , 2014, Medical Image Anal..

[7]  Yaozong Gao,et al.  Learning to Rank Atlases for Multiple-Atlas Segmentation , 2014, IEEE Transactions on Medical Imaging.

[8]  Daniel Rueckert,et al.  LEAP: Learning embeddings for atlas propagation , 2010, NeuroImage.

[9]  Jiri Matas,et al.  On Combining Classifiers , 1998, IEEE Trans. Pattern Anal. Mach. Intell..

[10]  Chengwen Chu,et al.  Multi‐atlas pancreas segmentation: Atlas selection based on vessel structure , 2017, Medical Image Anal..

[11]  Grégoire Malandain,et al.  Assessing selection methods in the context of multi-atlas based segmentation , 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[12]  Jinzhong Yang,et al.  Atlas ranking and selection for automatic segmentation of the esophagus from CT scans , 2017, Physics in medicine and biology.

[13]  Daniel Rueckert,et al.  Automated Abdominal Multi-Organ Segmentation With Subject-Specific Atlas Generation , 2013, IEEE Transactions on Medical Imaging.

[14]  G. Sharp,et al.  Vision 20/20: perspectives on automated image segmentation for radiotherapy. , 2014, Medical physics.

[15]  Josien P. W. Pluim,et al.  Improving label fusion in multi-atlas based segmentation by locally combining atlas selection and performance estimation , 2015, Comput. Vis. Image Underst..

[16]  T Kadir,et al.  TU-AB-202-10: How Effective Are Current Atlas Selection Methods for Atlas-Based Auto-Contouring in Radiotherapy Planning? , 2016, Medical physics.

[17]  C. Garibaldi,et al.  Recent advances in radiation oncology , 2017, Ecancermedicalscience.

[18]  Torsten Rohlfing,et al.  Quo Vadis, Atlas-Based Segmentation? , 2005 .

[19]  Djamal Boukerroui,et al.  Can Atlas-Based Auto-Segmentation Ever Be Perfect? Insights From Extreme Value Theory , 2019, IEEE Transactions on Medical Imaging.

[20]  Tingting Zhao,et al.  Learning image based surrogate relevance criterion for atlas selection in segmentation , 2016, Physics in medicine and biology.

[21]  Márcio Sarroglia Pinho,et al.  Atlas selection for hippocampus segmentation: Relevance evaluation of three meta-information parameters , 2018, Comput. Biol. Medicine.

[22]  Bennett A Landman,et al.  Efficient multi-atlas abdominal segmentation on clinically acquired CT with SIMPLE context learning , 2015, Medical Image Anal..

[23]  Iddo Wernick,et al.  Atlas-based segmentation improves consistency and decreases time required for contouring postoperative endometrial cancer nodal volumes. , 2011, International journal of radiation oncology, biology, physics.

[24]  Mert R. Sabuncu,et al.  A Generative Model for Image Segmentation Based on Label Fusion , 2010, IEEE Transactions on Medical Imaging.

[25]  Xuelong Li,et al.  Putting images on a manifold for atlas-based image segmentation , 2011, 2011 18th IEEE International Conference on Image Processing.

[26]  Max A. Viergever,et al.  Multi-Atlas-Based Segmentation With Local Decision Fusion—Application to Cardiac and Aortic Segmentation in CT Scans , 2009, IEEE Transactions on Medical Imaging.

[27]  Michaël Sdika,et al.  Combining atlas based segmentation and intensity classification with nearest neighbor transform and accuracy weighted vote , 2010, Medical Image Anal..

[28]  Carlos Ortiz-de-Solorzano,et al.  Combination Strategies in Multi-Atlas Image Segmentation: Application to Brain MR Data , 2009, IEEE Transactions on Medical Imaging.

[29]  Jean-Philippe Thirion,et al.  Image matching as a diffusion process: an analogy with Maxwell's demons , 1998, Medical Image Anal..

[30]  Daniel Rueckert,et al.  Multi-atlas based segmentation of brain images: Atlas selection and its effect on accuracy , 2009, NeuroImage.

[31]  Sébastien Ourselin,et al.  GAS: A genetic atlas selection strategy in multi‐atlas segmentation framework , 2019, Medical Image Anal..

[32]  M. Leech,et al.  Use of auto-segmentation in the delineation of target volumes and organs at risk in head and neck , 2016, Acta oncologica.

[33]  Martin Styner,et al.  Comparison and Evaluation of Methods for Liver Segmentation From CT Datasets , 2009, IEEE Transactions on Medical Imaging.

[34]  Paul A. Yushkevich,et al.  Multi-Atlas Segmentation with Joint Label Fusion , 2013, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[35]  Michael Lock,et al.  Technology assessment of automated atlas based segmentation in prostate bed contouring , 2011, Radiation oncology.

[36]  Takeo Kanade,et al.  An Iterative Image Registration Technique with an Application to Stereo Vision , 1981, IJCAI.

[37]  Martin Styner,et al.  Multi-atlas segmentation of subcortical brain structures via the AutoSeg software pipeline , 2014, Front. Neuroinform..

[38]  Xiao Han,et al.  Clinical validation of atlas-based auto-segmentation of multiple target volumes and normal tissue (swallowing/mastication) structures in the head and neck. , 2011, International journal of radiation oncology, biology, physics.

[39]  Stéphane Supiot,et al.  Comparison of Automated Atlas-Based Segmentation Software for Postoperative Prostate Cancer Radiotherapy , 2016, Front. Oncol..

[40]  Nikos Paragios,et al.  Deformable Medical Image Registration: A Survey , 2013, IEEE Transactions on Medical Imaging.

[41]  Max A. Viergever,et al.  Label Fusion in Atlas-Based Segmentation Using a Selective and Iterative Method for Performance Level Estimation (SIMPLE) , 2010, IEEE Transactions on Medical Imaging.

[42]  Daniel Rueckert,et al.  Nonrigid registration using free-form deformations: application to breast MR images , 1999, IEEE Transactions on Medical Imaging.

[43]  Torsten Rohlfing,et al.  Performance-based classifier combination in atlas-based image segmentation using expectation-maximization parameter estimation , 2004, IEEE Transactions on Medical Imaging.

[44]  Sébastien Ourselin,et al.  Using Manifold Learning for Atlas Selection in Multi-Atlas Segmentation , 2013, PloS one.

[45]  Paul J. Besl,et al.  A Method for Registration of 3-D Shapes , 1992, IEEE Trans. Pattern Anal. Mach. Intell..

[46]  William M. Wells,et al.  Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation , 2004, IEEE Transactions on Medical Imaging.

[47]  Seth A. Smith,et al.  Groupwise multi-atlas segmentation of the spinal cord's internal structure , 2014, Medical Image Anal..

[48]  Meritxell Bach Cuadra,et al.  Multi-Atlas based Segmentation of Head and Neck CT Images using Active Contour Framework , 2010 .

[49]  Pingkun Yan,et al.  Label Image Constrained Multiatlas Selection , 2015, IEEE Transactions on Cybernetics.

[50]  Grégoire Malandain,et al.  Efficient Selection of the Most Similar Image in a Database for Critical Structures Segmentation , 2007, MICCAI.

[51]  Grégoire Malandain,et al.  Construction of Patient Specific Atlases from Locally Most Similar Anatomical Pieces , 2010, MICCAI.

[52]  Juha Koikkalainen,et al.  Fast and robust multi-atlas segmentation of brain magnetic resonance images , 2010, NeuroImage.

[53]  Cameron S. Carter,et al.  Optimum template selection for atlas-based segmentation , 2007, NeuroImage.

[54]  Francesco Amato,et al.  Multi atlas based segmentation: should we prefer the best atlas group over the group of best atlases? , 2018, Physics in medicine and biology.

[55]  K A Langmack,et al.  The utility of atlas-assisted segmentation in the male pelvis is dependent on the interobserver agreement of the structures segmented. , 2014, The British journal of radiology.

[56]  J. Piper,et al.  Atlas-based Segmentation in Prostate IMRT: Timesavings in the Clinical Workflow , 2008 .

[57]  Josien P W Pluim,et al.  Multiatlas-based segmentation with preregistration atlas selection. , 2013, Medical physics.

[58]  Torsten Rohlfing,et al.  Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains , 2004, NeuroImage.

[59]  Christoffer Granberg Clinical evaluation of atlas based segmentation for radiotherapy of prostate tumours , 2011 .

[60]  Dean F. Sittig,et al.  Prospective randomized double-blind study of atlas-based organ-at-risk autosegmentation-assisted radiation planning in head and neck cancer. , 2014, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

[61]  Vincenzo Valentini,et al.  Clinical validation of atlas-based auto-segmentation of pelvic volumes and normal tissue in rectal tumors using auto-segmentation computed system , 2013, Acta oncologica.

[62]  Max A. Viergever,et al.  Adaptive local multi-atlas segmentation: Application to the heart and the caudate nucleus , 2010, Medical Image Anal..

[63]  Stefan Klein,et al.  Automatic segmentation of the prostate in 3D MR images by atlas matching using localized mutual information. , 2008, Medical physics.