Evolution of oil droplets in a chemorobotic platform

Evolution, once the preserve of biology, has been widely emulated in software, while physically embodied systems that can evolve have been limited to electronic and robotic devices and have never been artificially implemented in populations of physically interacting chemical entities. Herein we present a liquid-handling robot built with the aim of investigating the properties of oil droplets as a function of composition via an automated evolutionary process. The robot makes the droplets by mixing four different compounds in different ratios and placing them in a Petri dish after which they are recorded using a camera and the behaviour of the droplets analysed using image recognition software to give a fitness value. In separate experiments, the fitness function discriminates based on movement, division and vibration over 21 cycles, giving successive fitness increases. Analysis and theoretical modelling of the data yields fitness landscapes analogous to the genotype–phenotype correlations found in biological evolution.

[1]  L. Scriven,et al.  The Marangoni Effects , 1960, Nature.

[2]  S. Gould,et al.  Darwinism and the expansion of evolutionary theory. , 1982, Science.

[3]  Jordan B. Pollack,et al.  Automatic design and manufacture of robotic lifeforms , 2000, Nature.

[4]  D. Lancet,et al.  Compositional genomes: prebiotic information transfer in mutually catalytic noncovalent assemblies. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[5]  Yutaka Sumino,et al.  Mode selection in the spontaneous motion of an alcohol droplet. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.

[6]  Harold J. Morowitz,et al.  The chemical logic of a minimum protocell , 2005, Origins of life and evolution of the biosphere.

[7]  R. Pfeifer,et al.  Self-Organization, Embodiment, and Biologically Inspired Robotics , 2007, Science.

[8]  Julian Francis Miller,et al.  Evolution in Materio: Exploiting the Physics of Materials for Computation , 2008, Int. J. Unconv. Comput..

[9]  K. Yoshikawa,et al.  Spontaneous deformation of an oil droplet induced by the cooperative transport of cationic and anionic surfactants through the interface. , 2009, The journal of physical chemistry. B.

[10]  Jeffrey E. Barrick,et al.  Genome evolution and adaptation in a long-term experiment with Escherichia coli , 2009, Nature.

[11]  Takashi Ikegami,et al.  Self-propelled oil droplets consuming "fuel" surfactant. , 2009, Journal of the American Chemical Society.

[12]  J. Szostak,et al.  Coupled Growth and Division of Model Protocell Membranes , 2009, Journal of the American Chemical Society.

[13]  Wenguo Liu,et al.  Modeling and Optimization of Adaptive Foraging in Swarm Robotic Systems , 2010, Int. J. Robotics Res..

[14]  Jason E. Kreutz,et al.  Evolution of catalysts directed by genetic algorithms in a plug-based microfluidic device tested with oxidation of methane by oxygen. , 2010, Journal of the American Chemical Society.

[15]  Jack W. Szostak,et al.  An optimal degree of physical and chemical heterogeneity for the origin of life? , 2011, Philosophical Transactions of the Royal Society B: Biological Sciences.

[16]  Jason D. Lohn,et al.  Computer-Automated Evolution of an X-Band Antenna for NASA's Space Technology 5 Mission , 2011, Evolutionary Computation.

[17]  Kensuke Kurihara,et al.  Self-reproduction of supramolecular giant vesicles combined with the amplification of encapsulated DNA. , 2011, Nature chemistry.

[18]  Filip Ilievski,et al.  Soft robotics for chemists. , 2011, Angewandte Chemie.

[19]  Rhys Jones,et al.  RepRap – the replicating rapid prototyper , 2011, Robotica.

[20]  Harold Fellermann,et al.  Specific and reversible DNA-directed self-assembly of oil-in-water emulsion droplets , 2012, Proceedings of the National Academy of Sciences.

[21]  S. Agatonovic-Kustrin,et al.  Hybrid neural networks as tools for predicting the phase behavior of colloidal systems , 2012 .

[22]  A. Eiben,et al.  Embodied artificial evolution Artificial evolutionary systems in the 21 st Century , 2012 .

[23]  S. P. Fletcher,et al.  Mechanisms of autocatalysis. , 2013, Angewandte Chemie.

[24]  G. Murtas Early self-reproduction, the emergence of division mechanisms in protocells. , 2013, Molecular bioSystems.

[25]  Leroy Cronin,et al.  Hardware and Software manual for Evolution of Oil Droplets in a Chemo-Robotic Platform , 2014, ArXiv.