Metabolically engineered Saccharomyces cerevisiae for branched-chain ester productions.

Medium branched-chain esters can be used not only as a biofuel but are also useful chemicals with various industrial applications. The development of economically feasible and environment friendly bio-based fuels requires efficient cell factories capable of producing desired products in high yield. Herein, we sought to use a number of strategies to engineer Saccharomyces cerevisiae for high-level production of branched-chain esters. Mitochondrion-based expression of ATF1 gene in a base strain with an overexpressed valine biosynthetic pathway together with expression of mitochondrion-relocalized α-ketoacid decarboxylase (encoded by ARO10) and alcohol dehydrogenase (encoded by ADH7) not only produced isobutyl acetate, but also 3-methyl-1-butyl acetate and 2-methyl-1-butyl acetate. Further segmentation of the downstream esterification step into the cytosol to utilize the cytosolic acetyl-CoA pool for acetyltransferase (ATF)-mediated condensation enabled an additional fold improvement of ester productions. The best titre attained in the present study is 260.2mg/L isobutyl acetate, 296.1mg/L 3-methyl-1-butyl acetate and 289.6mg/L 2-methyl-1-butyl acetate.

[1]  J. Veuthey,et al.  Identification and Functional Expression of the Mitochondrial Pyruvate Carrier , 2012, Science.

[2]  C. Herbert,et al.  A ‘natural’ mutation in Saccharomyces cerevisiae strains derived from S288c affects the complex regulatory gene HAP1 (CYP1) , 1999, Current Genetics.

[3]  L. Grivell,et al.  Subunit IV of yeast cytochrome c oxidase: cloning and nucleotide sequencing of the gene and partial amino acid sequencing of the mature protein. , 1984, The EMBO journal.

[4]  Jian Chen,et al.  Compartmentalizing metabolic pathway in Candida glabrata for acetoin production. , 2015, Metabolic engineering.

[5]  S. Polasky,et al.  Environmental, economic, and energetic costs and benefits of biodiesel and ethanol biofuels. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[6]  J. Dickinson Pathways of leucine and valine catabolism in yeast. , 2000, Methods in enzymology.

[7]  R. Müller,et al.  Regulatable promoters of Saccharomyces cerevisiae: comparison of transcriptional activity and their use for heterologous expression. , 1994, Nucleic acids research.

[8]  K. Benjamin,et al.  Engineering Acetyl Coenzyme A Supply: Functional Expression of a Bacterial Pyruvate Dehydrogenase Complex in the Cytosol of Saccharomyces cerevisiae , 2014, mBio.

[9]  Jay D Keasling,et al.  Engineering of the pyruvate dehydrogenase bypass in Saccharomyces cerevisiae for high-level production of isoprenoids. , 2007, Metabolic engineering.

[10]  Roberto A Chica,et al.  Semi-rational approaches to engineering enzyme activity: combining the benefits of directed evolution and rational design. , 2005, Current opinion in biotechnology.

[11]  M. Chang,et al.  Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid short- and branched-chain alkyl esters biodiesel , 2015, Biotechnology for Biofuels.

[12]  Kevin V. Solomon,et al.  A dynamic metabolite valve for the control of central carbon metabolism. , 2012, Metabolic engineering.

[13]  M. Proft,et al.  Differential Regulation of Mitochondrial Pyruvate Carrier Genes Modulates Respiratory Capacity and Stress Tolerance in Yeast , 2013, PloS one.

[14]  Tomohisa Hasunuma,et al.  Implementation of a transhydrogenase-like shunt to counter redox imbalance during xylose fermentation in Saccharomyces cerevisiae , 2012, Applied Microbiology and Biotechnology.

[15]  C. Ching,et al.  Mitochondrial acetyl-CoA utilization pathway for terpenoid productions. , 2016, Metabolic engineering.

[16]  Chi Bun Ching,et al.  Combinatorial assembly of large biochemical pathways into yeast chromosomes for improved production of value-added compounds. , 2015, ACS synthetic biology.

[17]  G. Giannuzzi,et al.  α-Isopropylmalate, a Leucine Biosynthesis Intermediate in Yeast, Is Transported by the Mitochondrial Oxalacetate Carrier* , 2008, Journal of Biological Chemistry.

[18]  J. Dufour,et al.  Alcohol acetyltransferases and the significance of ester synthesis in yeast , 2000, Yeast.

[19]  J. Liao,et al.  Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels , 2008, Nature.

[20]  Y. Kaneko,et al.  Characterization of the ATF1 and Lg-ATF1 genes encoding alcohol acetyltransferases in the bottom fermenting yeast Saccharomyces pastorianus , 1998 .

[21]  A. Iwamatsu,et al.  Molecular cloning, sequence analysis, and expression of the yeast alcohol acetyltransferase gene , 1994, Applied and environmental microbiology.

[22]  G. Stephanopoulos,et al.  Compartmentalization of metabolic pathways in yeast mitochondria improves production of branched chain alcohols , 2013, Nature Biotechnology.

[23]  A. Aharoni,et al.  Functional Characterization of Enzymes Forming Volatile Esters from Strawberry and Banana[w] , 2004, Plant Physiology.

[24]  Jean-Paul Lange,et al.  Valeric biofuels: a platform of cellulosic transportation fuels. , 2010, Angewandte Chemie.

[25]  Jun Ishii,et al.  Genetic engineering to enhance the Ehrlich pathway and alter carbon flux for increased isobutanol production from glucose by Saccharomyces cerevisiae. , 2012, Journal of biotechnology.

[26]  Jens Nielsen,et al.  Combined metabolic engineering of precursor and co-factor supply to increase α-santalene production by Saccharomyces cerevisiae , 2012, Microbial Cell Factories.

[27]  G. Bennett,et al.  Applicability of CoA/acetyl-CoA manipulation system to enhance isoamyl acetate production in Escherichia coli. , 2004, Metabolic engineering.

[28]  Donovan S. Layton,et al.  Engineering modular ester fermentative pathways in Escherichia coli. , 2014, Metabolic engineering.

[29]  Claire Redin,et al.  A Mitochondrial Pyruvate Carrier Required for Pyruvate Uptake in Yeast, Drosophila, and Humans , 2012, Science.

[30]  C. Ching,et al.  Dynamic control of ERG9 expression for improved amorpha-4,11-diene production in Saccharomyces cerevisiae , 2015, Microbial Cell Factories.

[31]  C. Akoh,et al.  Lipase-catalyzed synthesis of terpene esters by transesterification in n-hexane , 1994, Biotechnology Letters.

[32]  J. Hegemann,et al.  A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast. , 2002, Nucleic acids research.

[33]  S. Atsumi,et al.  Expanding ester biosynthesis in Escherichia coli. , 2014, Nature chemical biology.

[34]  G. Bennett,et al.  Production of isoamyl acetate in ackA-pta and/or ldh mutants of Escherichia coli with overexpression of yeast ATF2 , 2004, Applied Microbiology and Biotechnology.

[35]  K. Autio,et al.  Mitochondrial fatty acid synthesis and respiration. , 2010, Biochimica et biophysica acta.

[36]  Jun Ishii,et al.  Increased isobutanol production in Saccharomyces cerevisiae by eliminating competing pathways and resolving cofactor imbalance , 2013, Microbial Cell Factories.

[37]  S. Harashima,et al.  Molecular mechanism of the multiple regulation of the Saccharomyces cerevisiae ATF1 gene encoding alcohol acetyltransferase , 1999, Yeast.

[38]  J. Keasling,et al.  Microbial engineering for the production of advanced biofuels , 2012, Nature.

[39]  J. Keasling,et al.  Microbial production of fatty-acid-derived fuels and chemicals from plant biomass , 2010, Nature.

[40]  Kechun Zhang,et al.  Engineered biosynthesis of medium-chain esters in Escherichia coli. , 2015, Metabolic engineering.

[41]  Chunaram Choudhary,et al.  Acetylation dynamics and stoichiometry in Saccharomyces cerevisiae , 2014, Molecular systems biology.

[42]  Shuchi H. Desai,et al.  Two-dimensional isobutyl acetate production pathways to improve carbon yield , 2015, Nature Communications.

[43]  J. Martinou,et al.  Regulation of mitochondrial pyruvate uptake by alternative pyruvate carrier complexes , 2015, The EMBO journal.

[44]  S. Kohlwein,et al.  Fatty acid synthesis and elongation in yeast. , 2007, Biochimica et biophysica acta.