Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems
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Benjamin M. Good | David Osumi-Sutherland | Seth Carbon | Huaiyu Mi | Suzanna E Lewis | Paul D Thomas | Pascale Gaudet | David P Hill | Laurent-Philippe Albou | James P Balhoff | Benjamin Good | Kimberly Van Auken | Christopher J Mungall | D. Hill | S. Lewis | C. Mungall | P. Thomas | S. Carbon | H. Mi | D. Osumi-Sutherland | Laurent-Philippe Albou | J. Balhoff | P. Gaudet | K. Van Auken | K. V. Van Auken | S. Lewis | David Osumi-Sutherland
[1] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[2] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[3] Raymond Y. N. Lee,et al. Building a Cell and Anatomy Ontology of Caenorhabditis Elegans , 2003, Comparative and functional genomics.
[4] A. Rector,et al. Relations in biomedical ontologies , 2005, Genome Biology.
[5] J. Svejstrup,et al. Damage-induced ubiquitylation of human RNA polymerase II by the ubiquitin ligase Nedd4, but not Cockayne syndrome proteins or BRCA1. , 2007, Molecular cell.
[6] Sarala M. Wimalaratne,et al. The Systems Biology Graphical Notation , 2009, Nature Biotechnology.
[7] Jing Chen,et al. ToppGene Suite for gene list enrichment analysis and candidate gene prioritization , 2009, Nucleic Acids Res..
[8] S. Lewis,et al. Uberon, an integrative multi-species anatomy ontology , 2012, Genome Biology.
[9] Jianmin Wu,et al. PINA v2.0: mining interactome modules , 2011, Nucleic Acids Res..
[10] Andreas Zell,et al. Path2Models: large-scale generation of computational models from biochemical pathway maps , 2013, BMC Systems Biology.
[11] Christoph Steinbeck,et al. Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology , 2013, BMC Genomics.
[12] Zhenjun Hu,et al. Using VisANT to Analyze Networks , 2014, Current protocols in bioinformatics.
[13] Chris Mungall,et al. Use of OWL within the Gene Ontology , 2014, bioRxiv.
[14] Robert E. W. Hancock,et al. NetworkAnalyst - integrative approaches for protein–protein interaction network analysis and visual exploration , 2014, Nucleic Acids Res..
[15] Alex J. Cornish,et al. SANTA: Quantifying the Functional Content of Molecular Networks , 2014, PLoS Comput. Biol..
[16] Aurélien Naldi,et al. Cooperative development of logical modelling standards and tools with CoLoMoTo , 2014, bioRxiv.
[17] Ernest Fraenkel,et al. SAMNetWeb: identifying condition-specific networks linking signaling and transcription , 2015, Bioinform..
[18] Terry F. Hayamizu,et al. Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data , 2015, Mammalian Genome.
[19] Gary D. Bader,et al. Cytoscape.js: a graph theory library for visualisation and analysis , 2015, Bioinform..
[20] Alan Ruttenberg,et al. The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability , 2016, J. Biomed. Semant..
[21] Christoph Steinbeck,et al. ChEBI in 2016: Improved services and an expanding collection of metabolites , 2015, Nucleic Acids Res..
[22] Marcus C Chibucos,et al. The Evidence and Conclusion Ontology (ECO): Supporting GO Annotations. , 2017, Methods in molecular biology.
[23] Paul D Thomas,et al. The Gene Ontology and the Meaning of Biological Function. , 2017, Methods in molecular biology.
[24] James C. Hu,et al. The Gene Ontology Resource: 20 years and still GOing strong , 2019 .